Wall clock time and date at job start Fri Apr 10 2020 18:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36013 * 117.00279 * 2 1 4 4 C 1.35852 * 120.31184 * 0.02595 * 3 2 1 5 5 N 1.35450 * 120.77454 * 179.72056 * 4 3 2 6 6 H 0.96996 * 119.29366 * 180.27096 * 5 4 3 7 7 C 1.36429 * 121.40704 * 0.52180 * 5 4 3 8 8 C 1.48073 * 119.71345 * 179.75624 * 7 5 4 9 9 O 1.21516 * 119.99297 * 200.59717 * 8 7 5 10 10 N 1.34776 * 120.00086 * 20.59838 * 8 7 5 11 11 C 1.47423 * 125.64951 * 357.22042 * 10 8 7 12 12 C 1.54914 * 104.83297 * 155.91838 * 11 10 8 13 13 H 1.08995 * 111.00077 * 278.93641 * 12 11 10 14 14 N 1.46494 * 111.00318 * 155.08292 * 12 11 10 15 15 C 1.36936 * 120.00207 * 92.80631 * 14 12 11 16 16 H 1.07994 * 119.99791 * 359.97438 * 15 14 12 17 17 C 1.38812 * 119.99961 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00388 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99587 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46932 * 60.00846 * 19 17 15 21 21 H 1.48500 * 109.46748 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47300 * 300.00177 * 19 17 15 23 23 C 1.55158 * 101.57773 * 37.00822 * 12 11 10 24 24 H 1.08998 * 110.72072 * 82.86732 * 23 12 11 25 25 C 1.53005 * 110.71949 * 206.13405 * 23 12 11 26 26 C 1.47022 * 125.64731 * 177.27489 * 10 8 7 27 27 C 1.36178 * 120.56510 * 359.46991 * 7 5 4 28 28 C 1.41572 * 120.31252 * 179.97438 * 3 2 1 29 29 O 1.22265 * 120.65990 * 0.02562 * 28 3 2 30 30 H 1.09005 * 109.47248 * 300.00340 * 1 2 3 31 31 H 1.08998 * 109.47032 * 60.00035 * 1 2 3 32 32 H 1.09000 * 109.47756 * 179.97438 * 1 2 3 33 33 H 1.07999 * 119.61116 * 359.97162 * 4 3 2 34 34 H 1.08998 * 110.36525 * 37.07810 * 11 10 8 35 35 H 1.09003 * 110.45892 * 274.80416 * 11 10 8 36 36 H 0.97008 * 119.99872 * 272.79903 * 14 12 11 37 37 H 0.96999 * 120.00651 * 179.97438 * 18 17 15 38 38 H 1.09006 * 109.46542 * 59.99854 * 25 23 12 39 39 H 1.08991 * 109.47432 * 180.02562 * 25 23 12 40 40 H 1.08998 * 109.47093 * 300.00493 * 25 23 12 41 41 H 1.09000 * 109.88418 * 61.59046 * 26 10 8 42 42 H 1.09004 * 109.87926 * 300.43036 * 26 10 8 43 43 H 1.07993 * 120.40486 * 180.23389 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3552 0.0005 5 7 1.9180 3.5670 0.0062 6 1 1.3733 4.3695 0.0105 7 6 3.2774 3.6828 0.0010 8 6 3.8996 5.0265 0.0020 9 8 5.0472 5.1648 -0.3726 10 7 3.1930 6.0960 0.4184 11 6 1.7810 6.0809 0.8420 12 6 1.6321 7.3128 1.7695 13 1 1.9911 7.0908 2.7744 14 7 0.2445 7.7813 1.8014 15 6 -0.6100 7.3258 2.7696 16 1 -0.2610 6.6208 3.5095 17 6 -1.9247 7.7702 2.8001 18 7 -2.3502 8.6291 1.8981 19 14 -3.0905 7.1482 4.1206 20 1 -2.5590 7.5083 5.4596 21 1 -4.4262 7.7696 3.9343 22 1 -3.2131 5.6719 4.0172 23 6 2.5518 8.3454 1.0658 24 1 2.0244 8.8380 0.2490 25 6 3.0790 9.3730 2.0694 26 6 3.7023 7.4711 0.5243 27 6 4.0669 2.5732 0.0006 28 6 3.4598 1.2936 0.0005 29 8 4.1430 0.2796 0.0006 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2344 2.2973 0.0005 34 1 1.5589 5.1649 1.3894 35 1 1.1230 6.1748 -0.0219 36 1 -0.0691 8.4144 1.1366 37 1 -3.2690 8.9394 1.9191 38 1 3.6507 8.8632 2.8449 39 1 3.7212 10.0874 1.5544 40 1 2.2404 9.9005 2.5237 41 1 4.0094 7.8293 -0.4583 42 1 4.5468 7.5015 1.2128 43 1 5.1427 2.6679 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054909944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:42 Heat of formation + Delta-G solvation = -56.368111 kcal Electronic energy + Delta-G solvation = -27422.953337 eV Core-core repulsion = 23469.592917 eV Total energy + Delta-G solvation = -3953.360420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.72250 -41.16392 -39.37879 -38.96965 -38.82896 -35.95951 -34.16183 -32.80280 -32.62565 -31.72356 -29.36319 -28.60415 -27.70676 -26.12469 -25.11915 -24.22121 -23.02534 -22.03557 -21.28109 -19.89248 -19.21111 -19.14688 -18.35842 -17.67418 -17.31895 -17.24983 -17.02105 -16.37209 -16.23430 -15.78009 -15.50896 -15.38076 -15.24053 -14.98815 -14.68041 -14.58617 -14.41084 -14.26084 -14.06327 -13.82430 -13.27657 -13.08287 -12.90412 -12.81675 -12.43493 -12.31671 -12.24779 -12.18002 -12.01776 -11.71991 -11.64698 -11.41338 -10.93759 -10.76763 -10.58931 -9.92226 -9.05568 -8.82020 -7.93582 -5.23230 -0.53357 0.07563 1.33862 1.41178 1.52465 1.55768 1.59800 1.74731 2.26308 2.50576 2.56859 2.89424 3.35455 3.46117 3.55034 3.63898 3.69740 3.81897 3.84088 4.15644 4.21581 4.29933 4.37161 4.40160 4.43099 4.44063 4.54339 4.68153 4.76772 4.78461 4.81975 4.91794 4.97399 5.05909 5.13404 5.33586 5.43194 5.47634 5.57881 5.65721 6.08868 6.20520 6.26817 6.63063 6.85674 7.36725 8.05959 8.30173 9.28095 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.004313 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.069685 B = 6489.827465 C = 8884.509003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.319 6.319 3 C -0.056 4.056 4 C 0.062 3.938 5 N -0.547 5.547 6 H 0.438 0.562 7 C 0.145 3.855 8 C 0.572 3.428 9 O -0.540 6.540 10 N -0.599 5.599 11 C 0.048 3.952 12 C 0.176 3.824 13 H 0.070 0.930 14 N -0.715 5.715 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.058 4.058 18 N -0.961 5.961 19 Si 0.959 3.041 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.275 1.275 23 C -0.104 4.104 24 H 0.087 0.913 25 C -0.132 4.132 26 C 0.117 3.883 27 C -0.230 4.230 28 C 0.384 3.616 29 O -0.564 6.564 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.214 0.786 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.380 0.620 37 H 0.251 0.749 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 -4.997 -3.877 7.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.232 6.232 3 C -0.106 4.106 4 C -0.067 4.067 5 N -0.166 5.166 6 H 0.286 0.714 7 C 0.030 3.970 8 C 0.359 3.641 9 O -0.417 6.417 10 N -0.331 5.331 11 C -0.077 4.077 12 C 0.064 3.936 13 H 0.088 0.912 14 N -0.353 5.353 15 C -0.375 4.375 16 H 0.098 0.902 17 C -0.251 4.251 18 N -0.610 5.610 19 Si 0.789 3.211 20 H -0.211 1.211 21 H -0.229 1.229 22 H -0.200 1.200 23 C -0.124 4.124 24 H 0.105 0.895 25 C -0.189 4.189 26 C -0.005 4.005 27 C -0.258 4.258 28 C 0.279 3.721 29 O -0.454 6.454 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.134 0.866 33 H 0.231 0.769 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.213 0.787 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.238 -5.746 -3.936 8.715 hybrid contribution -1.414 0.369 0.429 1.523 sum 3.825 -5.377 -3.508 7.473 Atomic orbital electron populations 1.23505 0.76405 1.06138 1.02844 1.86219 1.23190 1.24399 1.89405 1.20214 0.93907 0.85981 1.10491 1.22280 1.00601 0.82824 1.01011 1.41993 1.04779 1.10292 1.59521 0.71363 1.20090 0.83849 0.94467 0.98636 1.17586 0.85334 0.82543 0.78671 1.90836 1.17676 1.84688 1.48489 1.48457 1.13310 1.08429 1.62934 1.23787 0.80099 1.03384 1.00448 1.21454 0.84929 0.90797 0.96404 0.91230 1.42364 1.06157 1.52388 1.34419 1.19517 0.91280 1.20388 1.06316 0.90236 1.25354 0.99032 1.00195 1.00554 1.69759 1.16718 1.36587 1.37958 0.85443 0.78154 0.78071 0.79407 1.21117 1.22945 1.20049 1.22468 0.94931 0.95915 0.99069 0.89451 1.21633 1.00831 0.98225 0.98235 1.22198 0.97116 0.78844 1.02343 1.22240 1.01964 0.90418 1.11128 1.17173 0.87546 0.89515 0.77849 1.90801 1.66977 1.38964 1.48659 0.90956 0.90672 0.86576 0.76934 0.89383 0.89091 0.78728 0.94017 0.92096 0.90872 0.93310 0.90029 0.90102 0.82445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -8.28 10.33 -78.56 -0.81 -9.09 16 3 C -0.06 -1.45 6.71 22.54 0.15 -1.30 16 4 C 0.06 1.09 10.22 83.58 0.85 1.95 16 5 N -0.55 -10.20 4.36 -184.20 -0.80 -11.01 16 6 H 0.44 6.97 4.47 -92.71 -0.41 6.55 16 7 C 0.14 3.50 6.55 40.56 0.27 3.76 16 8 C 0.57 14.88 7.75 86.85 0.67 15.55 16 9 O -0.54 -17.20 16.79 -3.76 -0.06 -17.26 16 10 N -0.60 -13.63 3.33 -814.95 -2.71 -16.34 16 11 C 0.05 1.09 4.76 86.86 0.41 1.51 16 12 C 0.18 4.91 3.16 46.39 0.15 5.06 16 13 H 0.07 2.05 8.00 -2.39 -0.02 2.03 16 14 N -0.71 -27.25 5.24 -316.39 -1.66 -28.91 16 15 C -0.24 -10.84 9.96 84.03 0.84 -10.00 16 16 H 0.08 3.38 7.83 -2.91 -0.02 3.36 16 17 C -0.06 -2.80 5.50 84.86 0.47 -2.34 16 18 N -0.96 -50.68 13.06 21.65 0.28 -50.40 16 19 Si 0.96 39.91 29.55 68.60 2.03 41.94 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 C -0.10 -2.38 3.19 -9.61 -0.03 -2.41 16 24 H 0.09 2.06 8.00 -2.39 -0.02 2.04 16 25 C -0.13 -2.84 9.16 71.98 0.66 -2.18 16 26 C 0.12 2.47 6.47 86.73 0.56 3.03 16 27 C -0.23 -6.65 9.52 22.63 0.22 -6.43 16 28 C 0.38 12.69 6.78 23.93 0.16 12.86 16 29 O -0.56 -23.57 17.71 8.94 0.16 -23.41 16 30 H 0.07 0.75 7.66 -2.38 -0.02 0.73 16 31 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 32 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.21 1.99 6.21 -2.91 -0.02 1.97 16 34 H 0.09 1.85 6.19 -2.39 -0.01 1.83 16 35 H 0.09 1.94 7.59 -2.39 -0.02 1.92 16 36 H 0.38 15.97 7.76 -92.70 -0.72 15.25 16 37 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 38 H 0.06 1.23 8.06 -2.38 -0.02 1.21 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.66 7.77 -2.39 -0.02 1.64 16 43 H 0.16 4.70 7.72 -2.91 -0.02 4.68 16 Total: -1.00 -69.05 357.04 2.84 -66.22 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.07 Total: 28.02 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.49 Total: 20.24 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -4.89 Total: -106.65 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.72 Total: -49.76 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -69.05 2.84 -66.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054909944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.847 kcal (2) G-P(sol) polarization free energy of solvation -69.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds