Wall clock time and date at job start Fri Apr 10 2020 18:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64700 * 204.07770 * 5 4 2 7 7 O 1.21608 * 120.00287 * 0.03643 * 6 5 4 8 8 C 1.47389 * 120.00108 * 180.02562 * 6 5 4 9 9 C 1.47019 * 127.18860 * 0.03385 * 8 6 5 10 10 C 1.34177 * 105.95137 * 179.97438 * 9 8 6 11 11 O 1.34216 * 109.12631 * 359.97438 * 10 9 8 12 12 C 1.33648 * 110.90470 * 359.76557 * 11 10 9 13 13 C 1.50701 * 125.79863 * 180.26673 * 12 11 10 14 14 C 1.50707 * 109.47105 * 270.13799 * 13 12 11 15 15 N 1.34778 * 120.00130 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99857 * 0.02562 * 14 13 12 17 17 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 18 18 C 1.54327 * 107.26790 * 358.93814 * 17 5 4 19 19 H 1.08998 * 110.86741 * 219.36876 * 18 17 5 20 20 N 1.46503 * 110.71839 * 96.17284 * 18 17 5 21 21 C 1.36931 * 120.00202 * 91.47458 * 20 18 17 22 22 H 1.08004 * 119.99589 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00349 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00230 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99927 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47289 * 89.99484 * 25 23 21 27 27 H 1.48497 * 109.47146 * 209.99797 * 25 23 21 28 28 H 1.48507 * 109.46917 * 329.99639 * 25 23 21 29 29 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 30 30 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 31 31 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 32 32 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 33 33 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 34 34 H 1.07998 * 127.02696 * 359.93197 * 9 8 6 35 35 H 1.08004 * 125.43772 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47545 * 30.14072 * 13 12 11 37 37 H 1.09003 * 109.47294 * 150.14436 * 13 12 11 38 38 H 0.97002 * 119.99650 * 0.02562 * 15 14 13 39 39 H 0.96994 * 120.00022 * 180.02562 * 15 14 13 40 40 H 1.08993 * 109.88066 * 239.51797 * 17 5 4 41 41 H 1.08996 * 110.00664 * 118.42784 * 17 5 4 42 42 H 0.96996 * 119.99702 * 271.47318 * 20 18 17 43 43 H 0.97006 * 120.00160 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4488 -1.5606 -1.5928 7 8 4.3020 -1.4991 -2.7985 8 6 5.7432 -1.9832 -1.0287 9 6 6.0930 -2.1130 0.3933 10 6 7.3699 -2.5240 0.4230 11 8 7.8194 -2.6538 -0.8350 12 6 6.8650 -2.3419 -1.7170 13 6 7.0054 -2.3771 -3.2171 14 6 7.4894 -1.0369 -3.7079 15 7 7.6891 -0.8337 -5.0252 16 8 7.7001 -0.1416 -2.9174 17 6 3.4678 -1.2731 0.6969 18 6 2.0861 -0.8075 1.2025 19 1 2.1886 -0.1701 2.0808 20 7 1.2272 -1.9574 1.4964 21 6 1.2060 -2.4917 2.7570 22 1 1.8222 -2.0651 3.5347 23 6 0.3919 -3.5809 3.0356 24 7 0.3719 -4.0948 4.2471 25 14 -0.6744 -4.3183 1.6906 26 1 0.0845 -5.3815 0.9843 27 1 -1.8992 -4.9020 2.2941 28 1 -1.0561 -3.2573 0.7241 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5248 -0.8836 31 1 -0.3633 -1.0275 -0.0125 32 1 1.4531 -1.6706 -1.4022 33 1 2.1567 -0.1721 -2.0834 34 1 5.4531 -1.9169 1.2410 35 1 7.9441 -2.7200 1.3165 36 1 7.7239 -3.1476 -3.4968 37 1 6.0384 -2.6013 -3.6674 38 1 7.5210 -1.5499 -5.6574 39 1 8.0010 0.0287 -5.3411 40 1 4.2425 -0.5984 1.0609 41 1 3.6669 -2.2872 1.0433 42 1 0.6736 -2.3402 0.7980 43 1 -0.1968 -4.8562 4.4417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055015304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:48 Heat of formation + Delta-G solvation = -31.977506 kcal Electronic energy + Delta-G solvation = -27758.873255 eV Core-core repulsion = 23806.570492 eV Total energy + Delta-G solvation = -3952.302764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.57693 -39.73891 -39.47499 -37.63263 -34.13139 -33.90935 -33.18422 -32.41936 -31.80489 -30.82779 -28.29870 -27.70313 -26.29671 -23.96142 -22.98754 -21.67805 -21.58341 -20.75853 -19.48224 -18.83444 -17.90996 -17.68846 -17.17861 -17.02628 -16.00328 -15.96140 -15.78032 -15.38248 -15.02017 -14.59029 -14.32225 -14.06495 -13.87053 -13.68094 -13.37814 -12.94536 -12.79927 -12.76756 -12.63511 -12.16060 -12.01829 -11.85032 -11.70712 -11.45971 -11.03093 -10.74998 -10.53500 -10.33902 -10.26854 -10.05993 -9.92569 -9.78588 -9.70285 -9.62248 -9.05338 -8.68020 -8.26300 -7.39408 -5.86046 -3.22847 1.34832 2.17160 2.45764 2.70630 3.26601 3.30848 3.33292 3.34766 3.40652 3.60343 4.35265 4.51142 4.63001 4.73653 4.81073 4.96801 5.03976 5.07678 5.14976 5.25502 5.32761 5.51088 5.57014 5.63187 5.70831 5.81822 5.85599 5.94939 6.00608 6.08622 6.17572 6.26900 6.35461 6.39815 6.52741 6.54789 6.63776 6.71401 7.03475 7.05510 7.79860 7.88769 8.03703 8.32723 8.37885 9.09843 9.82450 10.01274 11.31683 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.003718 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.747190 B = 7529.606019 C = 8246.864834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.599 5.599 6 C 0.603 3.397 7 O -0.560 6.560 8 C -0.212 4.212 9 C -0.190 4.190 10 C -0.036 4.036 11 O -0.173 6.173 12 C 0.079 3.921 13 C -0.068 4.068 14 C 0.529 3.471 15 N -0.854 5.854 16 O -0.533 6.533 17 C 0.067 3.933 18 C 0.177 3.823 19 H 0.083 0.917 20 N -0.736 5.736 21 C -0.250 4.250 22 H 0.093 0.907 23 C 0.011 3.989 24 N -0.929 5.929 25 Si 0.879 3.121 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.276 1.276 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.172 0.828 35 H 0.210 0.790 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.402 0.598 39 H 0.403 0.597 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.363 0.637 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.003 4.997 -15.569 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.139 4.139 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.331 5.331 6 C 0.394 3.606 7 O -0.442 6.442 8 C -0.217 4.217 9 C -0.209 4.209 10 C -0.102 4.102 11 O -0.069 6.069 12 C 0.025 3.975 13 C -0.108 4.108 14 C 0.313 3.687 15 N -0.419 5.419 16 O -0.408 6.408 17 C -0.058 4.058 18 C 0.065 3.935 19 H 0.101 0.899 20 N -0.378 5.378 21 C -0.379 4.379 22 H 0.111 0.889 23 C -0.186 4.186 24 N -0.576 5.576 25 Si 0.710 3.290 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.202 1.202 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.189 0.811 35 H 0.226 0.774 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.230 0.770 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.198 0.802 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.355 5.307 -15.353 21.029 hybrid contribution -0.864 -0.718 -1.030 1.524 sum 12.491 4.589 -16.383 21.107 Atomic orbital electron populations 1.21575 0.93526 1.02661 1.01258 1.22697 0.96828 0.98979 0.95370 0.89787 1.22258 0.82658 0.98200 0.97608 1.48158 1.11656 1.65398 1.07839 1.16807 0.81937 0.76741 0.85091 1.90671 1.83460 1.55971 1.14107 1.21032 0.95411 1.11601 0.93645 1.23504 0.96561 1.04524 0.96305 1.23914 0.95877 1.05613 0.84792 1.83684 1.39186 1.68154 1.15832 1.21526 0.86077 0.99078 0.90798 1.20282 1.06624 0.96768 0.87096 1.20205 0.76329 0.89558 0.82575 1.43716 1.71704 1.18673 1.07763 1.90787 1.50429 1.44853 1.54780 1.23534 1.01186 1.02483 0.78630 1.21209 0.87948 0.89164 0.95190 0.89947 1.42788 1.49874 1.34629 1.10498 1.19059 1.21886 1.10284 0.86689 0.88927 1.24643 0.99602 0.98304 0.96032 1.69690 1.42785 1.26271 1.18887 0.86651 0.80857 0.79445 0.82092 1.21066 1.21620 1.20213 0.91753 0.93379 0.91916 0.91627 0.90929 0.81129 0.77388 0.86933 0.83992 0.76961 0.76638 0.91830 0.89778 0.80227 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.91 37.16 0.33 -1.62 16 2 C -0.12 -1.78 3.51 -88.47 -0.31 -2.09 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.12 1.84 6.33 -2.53 -0.02 1.83 16 5 N -0.60 -10.28 3.33 -171.80 -0.57 -10.85 16 6 C 0.60 10.83 7.84 -12.54 -0.10 10.73 16 7 O -0.56 -10.60 15.10 5.27 0.08 -10.52 16 8 C -0.21 -3.47 6.25 -103.27 -0.64 -4.12 16 9 C -0.19 -2.74 9.42 -37.46 -0.35 -3.09 16 10 C -0.04 -0.45 12.03 29.30 0.35 -0.09 16 11 O -0.17 -2.36 10.52 7.66 0.08 -2.28 16 12 C 0.08 1.14 5.87 -34.97 -0.21 0.94 16 13 C -0.07 -0.75 5.70 -29.03 -0.17 -0.92 16 14 C 0.53 6.47 8.09 -10.98 -0.09 6.38 16 15 N -0.85 -6.28 8.87 31.22 0.28 -6.01 16 16 O -0.53 -9.11 16.87 5.56 0.09 -9.02 16 17 C 0.07 1.12 4.74 -3.06 -0.01 1.11 16 18 C 0.18 3.11 3.39 -66.09 -0.22 2.88 16 19 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 20 N -0.74 -15.98 4.29 -51.65 -0.22 -16.20 16 21 C -0.25 -6.53 10.44 -15.06 -0.16 -6.69 16 22 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -28.05 13.97 55.49 0.78 -27.28 16 25 Si 0.88 21.40 27.74 -169.99 -4.71 16.68 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.05 6.40 -51.93 -0.33 0.72 16 32 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 33 H 0.07 1.11 8.04 -51.93 -0.42 0.70 16 34 H 0.17 2.35 4.87 -52.49 -0.26 2.09 16 35 H 0.21 1.68 8.06 -52.48 -0.42 1.25 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.14 1.58 6.49 -51.93 -0.34 1.25 16 38 H 0.40 1.57 8.83 -40.82 -0.36 1.21 16 39 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 40 H 0.06 0.95 6.86 -51.93 -0.36 0.59 16 41 H 0.08 1.55 6.92 -51.93 -0.36 1.19 16 42 H 0.36 7.97 4.13 -40.82 -0.17 7.81 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -36.05 354.03 -6.05 -42.10 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -5.49 Total: 12.59 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.69 Total: 5.44 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.26 Total: -60.33 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.25 Total: -21.82 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.05 -6.05 -42.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055015304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.125 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds