Wall clock time and date at job start Fri Apr 10 2020 18:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64700 * 204.07770 * 5 4 2 7 7 O 1.21608 * 120.00287 * 0.03643 * 6 5 4 8 8 C 1.47389 * 120.00108 * 180.02562 * 6 5 4 9 9 C 1.47019 * 127.18860 * 0.03385 * 8 6 5 10 10 C 1.34177 * 105.95137 * 179.97438 * 9 8 6 11 11 O 1.34216 * 109.12631 * 359.97438 * 10 9 8 12 12 C 1.33648 * 110.90470 * 359.76557 * 11 10 9 13 13 C 1.50701 * 125.79863 * 180.26673 * 12 11 10 14 14 C 1.50707 * 109.47105 * 270.13799 * 13 12 11 15 15 N 1.34778 * 120.00130 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99857 * 0.02562 * 14 13 12 17 17 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 18 18 C 1.54327 * 107.26790 * 358.93814 * 17 5 4 19 19 H 1.08998 * 110.86741 * 219.36876 * 18 17 5 20 20 N 1.46503 * 110.71839 * 96.17284 * 18 17 5 21 21 C 1.36931 * 120.00202 * 91.47458 * 20 18 17 22 22 H 1.08004 * 119.99589 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00349 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00230 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99927 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47289 * 89.99484 * 25 23 21 27 27 H 1.48497 * 109.47146 * 209.99797 * 25 23 21 28 28 H 1.48507 * 109.46917 * 329.99639 * 25 23 21 29 29 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 30 30 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 31 31 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 32 32 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 33 33 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 34 34 H 1.07998 * 127.02696 * 359.93197 * 9 8 6 35 35 H 1.08004 * 125.43772 * 180.02562 * 10 9 8 36 36 H 1.08999 * 109.47545 * 30.14072 * 13 12 11 37 37 H 1.09003 * 109.47294 * 150.14436 * 13 12 11 38 38 H 0.97002 * 119.99650 * 0.02562 * 15 14 13 39 39 H 0.96994 * 120.00022 * 180.02562 * 15 14 13 40 40 H 1.08993 * 109.88066 * 239.51797 * 17 5 4 41 41 H 1.08996 * 110.00664 * 118.42784 * 17 5 4 42 42 H 0.96996 * 119.99702 * 271.47318 * 20 18 17 43 43 H 0.97006 * 120.00160 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4488 -1.5606 -1.5928 7 8 4.3020 -1.4991 -2.7985 8 6 5.7432 -1.9832 -1.0287 9 6 6.0930 -2.1130 0.3933 10 6 7.3699 -2.5240 0.4230 11 8 7.8194 -2.6538 -0.8350 12 6 6.8650 -2.3419 -1.7170 13 6 7.0054 -2.3771 -3.2171 14 6 7.4894 -1.0369 -3.7079 15 7 7.6891 -0.8337 -5.0252 16 8 7.7001 -0.1416 -2.9174 17 6 3.4678 -1.2731 0.6969 18 6 2.0861 -0.8075 1.2025 19 1 2.1886 -0.1701 2.0808 20 7 1.2272 -1.9574 1.4964 21 6 1.2060 -2.4917 2.7570 22 1 1.8222 -2.0651 3.5347 23 6 0.3919 -3.5809 3.0356 24 7 0.3719 -4.0948 4.2471 25 14 -0.6744 -4.3183 1.6906 26 1 0.0845 -5.3815 0.9843 27 1 -1.8992 -4.9020 2.2941 28 1 -1.0561 -3.2573 0.7241 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 0.5248 -0.8836 31 1 -0.3633 -1.0275 -0.0125 32 1 1.4531 -1.6706 -1.4022 33 1 2.1567 -0.1721 -2.0834 34 1 5.4531 -1.9169 1.2410 35 1 7.9441 -2.7200 1.3165 36 1 7.7239 -3.1476 -3.4968 37 1 6.0384 -2.6013 -3.6674 38 1 7.5210 -1.5499 -5.6574 39 1 8.0010 0.0287 -5.3411 40 1 4.2425 -0.5984 1.0609 41 1 3.6669 -2.2872 1.0433 42 1 0.6736 -2.3402 0.7980 43 1 -0.1968 -4.8562 4.4417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055015304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:47 Heat of formation + Delta-G solvation = -60.258640 kcal Electronic energy + Delta-G solvation = -27760.099617 eV Core-core repulsion = 23806.570492 eV Total energy + Delta-G solvation = -3953.529126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.63122 -41.07772 -40.43220 -39.02773 -35.83970 -34.77850 -34.46821 -33.69138 -32.96805 -32.49219 -29.79746 -28.79204 -27.47103 -25.64147 -24.45371 -22.93547 -22.62747 -21.79737 -20.91543 -19.92914 -19.79452 -18.66561 -18.22998 -18.02619 -17.34532 -17.15003 -16.86507 -16.50636 -16.27595 -16.10215 -15.93888 -15.48723 -15.01693 -14.80112 -14.64003 -14.43053 -14.21342 -13.96517 -13.83908 -13.59718 -13.35841 -13.14250 -13.03574 -12.88287 -12.75664 -12.26406 -12.09590 -11.93733 -11.61728 -11.46757 -11.28720 -11.13602 -10.96463 -10.83310 -10.71229 -9.84925 -9.52406 -9.31253 -8.00458 -5.33238 0.21977 1.10525 1.36812 1.39055 1.45543 1.55034 1.71072 2.01572 2.20771 2.48326 2.67044 3.29615 3.37184 3.41344 3.54943 3.76270 3.82406 3.88608 4.00187 4.00535 4.15755 4.31784 4.37716 4.52441 4.56693 4.60325 4.62304 4.71295 4.80589 4.92132 4.95015 4.96841 5.16270 5.20784 5.27591 5.34317 5.48340 5.81093 5.84587 5.98017 6.23432 6.38152 6.45460 7.03559 7.09008 7.28029 7.84056 8.02172 9.20514 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.003718 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.747190 B = 7529.606019 C = 8246.864834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 H 0.108 0.892 4 C 0.113 3.887 5 N -0.604 5.604 6 C 0.596 3.404 7 O -0.577 6.577 8 C -0.249 4.249 9 C -0.215 4.215 10 C -0.022 4.022 11 O -0.173 6.173 12 C 0.078 3.922 13 C -0.068 4.068 14 C 0.525 3.475 15 N -0.829 5.829 16 O -0.590 6.590 17 C 0.080 3.920 18 C 0.167 3.833 19 H 0.087 0.913 20 N -0.737 5.737 21 C -0.222 4.222 22 H 0.069 0.931 23 C -0.056 4.056 24 N -0.980 5.980 25 Si 0.937 3.063 26 H -0.288 1.288 27 H -0.298 1.298 28 H -0.250 1.250 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.251 0.749 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.421 0.579 39 H 0.410 0.590 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.364 0.636 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.862 5.609 -17.762 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 H 0.126 0.874 4 C -0.009 4.009 5 N -0.335 5.335 6 C 0.388 3.612 7 O -0.461 6.461 8 C -0.254 4.254 9 C -0.234 4.234 10 C -0.087 4.087 11 O -0.068 6.068 12 C 0.024 3.976 13 C -0.107 4.107 14 C 0.310 3.690 15 N -0.394 5.394 16 O -0.471 6.471 17 C -0.045 4.045 18 C 0.057 3.943 19 H 0.104 0.896 20 N -0.379 5.379 21 C -0.352 4.352 22 H 0.087 0.913 23 C -0.247 4.247 24 N -0.630 5.630 25 Si 0.766 3.234 26 H -0.215 1.215 27 H -0.224 1.224 28 H -0.174 1.174 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.266 0.734 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.253 0.747 39 H 0.242 0.758 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.199 0.801 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.230 5.947 -17.645 23.435 hybrid contribution -1.000 -0.843 -0.394 1.366 sum 13.230 5.104 -18.039 22.945 Atomic orbital electron populations 1.21552 0.92972 1.01628 1.02587 1.22657 0.97169 0.99469 0.93034 0.87352 1.22330 0.82090 0.98145 0.98355 1.48236 1.12008 1.65428 1.07797 1.17127 0.82581 0.76479 0.85054 1.90636 1.83921 1.56838 1.14657 1.21173 0.95557 1.13669 0.94957 1.23586 0.97779 1.06344 0.95667 1.24674 0.95427 1.03266 0.85356 1.83718 1.38986 1.67848 1.16298 1.22084 0.85592 0.97605 0.92308 1.20435 1.07762 0.97482 0.85048 1.20416 0.75832 0.89246 0.83475 1.43526 1.69644 1.19676 1.06562 1.90762 1.53358 1.46469 1.56471 1.23290 1.00846 1.01715 0.78669 1.21444 0.87915 0.88215 0.96713 0.89559 1.42756 1.50664 1.35687 1.08827 1.19050 1.19491 1.08993 0.87707 0.91291 1.25309 1.01902 0.99565 0.97973 1.69847 1.44617 1.27380 1.21195 0.85688 0.78750 0.79025 0.79952 1.21511 1.22443 1.17430 0.91871 0.90617 0.94054 0.92514 0.90049 0.81208 0.73361 0.82730 0.84107 0.74695 0.75802 0.90019 0.91777 0.80118 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 8.91 71.98 0.64 -2.84 16 2 C -0.10 -2.87 3.51 -9.40 -0.03 -2.90 16 3 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.11 3.43 6.33 86.86 0.55 3.98 16 5 N -0.60 -20.21 3.33 -815.72 -2.71 -22.92 16 6 C 0.60 21.13 7.84 86.65 0.68 21.81 16 7 O -0.58 -21.51 15.10 -4.06 -0.06 -21.57 16 8 C -0.25 -8.03 6.25 -18.99 -0.12 -8.15 16 9 C -0.21 -6.07 9.42 23.65 0.22 -5.85 16 10 C -0.02 -0.50 12.03 66.89 0.80 0.30 16 11 O -0.17 -4.44 10.52 4.49 0.05 -4.39 16 12 C 0.08 2.18 5.87 25.26 0.15 2.33 16 13 C -0.07 -1.38 5.70 29.10 0.17 -1.22 16 14 C 0.53 12.09 8.09 87.66 0.71 12.80 16 15 N -0.83 -10.37 8.87 -173.52 -1.54 -11.91 16 16 O -0.59 -19.96 16.87 -3.04 -0.05 -20.01 16 17 C 0.08 2.62 4.74 86.73 0.41 3.03 16 18 C 0.17 5.68 3.39 46.18 0.16 5.83 16 19 H 0.09 2.90 8.09 -2.39 -0.02 2.88 16 20 N -0.74 -31.50 4.29 -317.33 -1.36 -32.86 16 21 C -0.22 -11.69 10.44 84.03 0.88 -10.81 16 22 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 23 C -0.06 -3.15 5.50 84.86 0.47 -2.68 16 24 N -0.98 -60.74 13.97 21.65 0.30 -60.44 16 25 Si 0.94 44.43 27.74 68.60 1.90 46.33 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 28 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.29 6.40 -2.39 -0.02 1.27 16 32 H 0.06 1.82 8.03 -2.39 -0.02 1.80 16 33 H 0.08 2.34 8.04 -2.39 -0.02 2.32 16 34 H 0.17 4.66 4.87 -2.91 -0.01 4.65 16 35 H 0.25 3.26 8.06 -2.91 -0.02 3.23 16 36 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.14 2.93 6.49 -2.39 -0.02 2.91 16 38 H 0.42 2.07 8.83 -92.71 -0.82 1.25 16 39 H 0.41 4.43 8.93 -92.71 -0.83 3.60 16 40 H 0.08 2.38 6.86 -2.39 -0.02 2.36 16 41 H 0.06 2.37 6.92 -2.39 -0.02 2.35 16 42 H 0.36 15.54 4.13 -92.71 -0.38 15.15 16 43 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -80.31 354.03 1.21 -79.10 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -1.00 Total: 33.04 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 5.68 Total: 15.62 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -5.31 Total: -128.13 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.07 Total: -45.98 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.33 kcal Total: -80.31 1.21 -79.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055015304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.843 kcal (2) G-P(sol) polarization free energy of solvation -80.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds