Wall clock time and date at job start Fri Apr 10 2020 18:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.88982 * 2 1 4 4 C 1.54904 * 111.00853 * 123.92418 * 2 1 3 5 5 N 1.47422 * 104.83599 * 155.08100 * 4 2 1 6 6 C 1.34778 * 125.64825 * 155.90661 * 5 4 2 7 7 O 1.21611 * 120.00403 * 0.02562 * 6 5 4 8 8 C 1.47385 * 119.99988 * 180.02562 * 6 5 4 9 9 C 1.47024 * 127.18994 * 0.02562 * 8 6 5 10 10 C 1.34176 * 105.95438 * 179.97438 * 9 8 6 11 11 O 1.34215 * 109.12289 * 359.97438 * 10 9 8 12 12 C 1.33652 * 110.90984 * 359.72892 * 11 10 9 13 13 C 1.50700 * 125.80323 * 180.28580 * 12 11 10 14 14 C 1.50697 * 109.47072 * 270.18265 * 13 12 11 15 15 N 1.34782 * 119.99871 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00153 * 0.02562 * 14 13 12 17 17 C 1.47026 * 108.70245 * 335.87493 * 5 4 2 18 18 C 1.54320 * 107.27121 * 1.05331 * 17 5 4 19 19 H 1.08995 * 110.87464 * 263.76261 * 18 17 5 20 20 N 1.46499 * 110.71836 * 140.55726 * 18 17 5 21 21 C 1.36931 * 120.00122 * 91.48076 * 20 18 17 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71949 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72145 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72253 * 25 23 21 29 29 H 1.09006 * 109.46778 * 183.88427 * 1 2 3 30 30 H 1.09000 * 109.46875 * 303.87826 * 1 2 3 31 31 H 1.08993 * 109.47442 * 63.88045 * 1 2 3 32 32 H 1.09002 * 110.36876 * 273.92270 * 4 2 1 33 33 H 1.09004 * 110.36839 * 36.13606 * 4 2 1 34 34 H 1.07999 * 127.02329 * 0.02562 * 9 8 6 35 35 H 1.08000 * 125.44040 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47224 * 30.18773 * 13 12 11 37 37 H 1.09001 * 109.47108 * 150.18459 * 13 12 11 38 38 H 0.96993 * 120.00167 * 0.02562 * 15 14 13 39 39 H 0.96999 * 119.99800 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.87987 * 241.63973 * 17 5 4 41 41 H 1.08998 * 109.88499 * 120.47813 * 17 5 4 42 42 H 0.97001 * 119.99790 * 271.47593 * 20 18 17 43 43 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8070 1.1999 5 7 3.4271 -1.2433 0.7728 6 6 4.4477 -1.5622 1.5933 7 8 4.3004 -1.5016 2.7989 8 6 5.7424 -1.9843 1.0295 9 6 6.0931 -2.1120 -0.3926 10 6 7.3703 -2.5223 -0.4220 11 8 7.8194 -2.6524 0.8360 12 6 6.8679 -2.3309 1.7179 13 6 7.0124 -2.3523 3.2178 14 6 6.6292 -3.7129 3.7400 15 7 6.6810 -3.9661 5.0628 16 8 6.2742 -4.5801 2.9701 17 6 3.4674 -1.2738 -0.6966 18 6 2.0861 -0.8075 -1.2026 19 1 1.4451 -1.6609 -1.4236 20 7 2.2285 0.0504 -2.3815 21 6 2.1998 -0.4989 -3.6355 22 1 2.0717 -1.5645 -3.7555 23 6 2.3353 0.3139 -4.7526 24 7 2.4909 1.6127 -4.6064 25 14 2.2883 -0.4344 -6.4635 26 1 3.6650 -0.8038 -6.8801 27 1 1.4329 -1.6482 -6.4496 28 1 1.7298 0.5538 -7.4209 29 1 -0.3633 -1.0254 0.0696 30 1 -0.3633 0.5729 0.8532 31 1 -0.3634 0.4524 -0.9226 32 1 2.1561 -0.1728 2.0836 33 1 1.4509 -1.6699 1.4030 34 1 5.4537 -1.9151 -1.2403 35 1 7.9454 -2.7160 -1.3154 36 1 8.0469 -2.1381 3.4862 37 1 6.3596 -1.5976 3.6565 38 1 6.9646 -3.2725 5.6787 39 1 6.4347 -4.8420 5.3990 40 1 3.6650 -2.2890 -1.0410 41 1 4.2426 -0.5994 -1.0603 42 1 2.3431 1.0076 -2.2738 43 1 2.5852 2.1808 -5.3871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055015306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:52 Heat of formation + Delta-G solvation = -66.762633 kcal Electronic energy + Delta-G solvation = -27467.661470 eV Core-core repulsion = 23513.850310 eV Total energy + Delta-G solvation = -3953.811160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.63864 -41.00349 -40.42761 -38.88905 -35.87430 -34.77584 -34.48581 -33.63495 -32.92081 -32.40320 -29.30839 -28.73752 -27.44708 -25.94764 -24.31389 -22.72356 -22.56739 -21.84797 -21.32935 -19.95706 -19.09817 -18.67613 -18.28838 -18.00468 -17.32161 -17.20886 -16.85082 -16.57810 -16.29081 -16.09904 -15.55667 -15.36640 -15.06303 -14.77880 -14.60421 -14.41811 -14.17169 -13.92646 -13.79452 -13.68557 -13.23747 -12.93612 -12.86891 -12.84478 -12.75021 -12.16492 -12.09499 -12.03620 -11.69272 -11.46970 -11.28347 -11.12602 -10.89560 -10.83944 -10.70604 -9.84687 -9.50857 -9.04961 -7.93067 -5.22878 0.21345 1.08770 1.51188 1.51682 1.55749 1.59845 1.70242 1.99547 2.20042 2.57851 2.67568 3.36011 3.39468 3.40740 3.77094 3.80968 3.87990 3.88603 4.01089 4.16079 4.21633 4.31526 4.34910 4.45930 4.59373 4.60116 4.62650 4.74167 4.87663 4.88149 4.96474 5.09539 5.11544 5.22700 5.32216 5.32778 5.48771 5.56218 5.85282 5.97083 6.27106 6.39355 6.43764 7.03457 7.29151 7.35367 8.05738 8.31004 9.29628 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.003516 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.380481 B = 7961.656037 C = 9240.912560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.606 5.606 6 C 0.597 3.403 7 O -0.574 6.574 8 C -0.250 4.250 9 C -0.217 4.217 10 C -0.022 4.022 11 O -0.172 6.172 12 C 0.080 3.920 13 C -0.067 4.067 14 C 0.524 3.476 15 N -0.829 5.829 16 O -0.592 6.592 17 C 0.086 3.914 18 C 0.170 3.830 19 H 0.070 0.930 20 N -0.719 5.719 21 C -0.241 4.241 22 H 0.079 0.921 23 C -0.067 4.067 24 N -0.966 5.966 25 Si 0.967 3.033 26 H -0.287 1.287 27 H -0.270 1.270 28 H -0.299 1.299 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.165 0.835 35 H 0.249 0.751 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.422 0.578 39 H 0.410 0.590 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.376 0.624 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 -7.195 18.472 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 H 0.092 0.908 4 C -0.004 4.004 5 N -0.338 5.338 6 C 0.389 3.611 7 O -0.457 6.457 8 C -0.254 4.254 9 C -0.236 4.236 10 C -0.087 4.087 11 O -0.067 6.067 12 C 0.026 3.974 13 C -0.106 4.106 14 C 0.309 3.691 15 N -0.394 5.394 16 O -0.472 6.472 17 C -0.040 4.040 18 C 0.060 3.940 19 H 0.088 0.912 20 N -0.357 5.357 21 C -0.373 4.373 22 H 0.097 0.903 23 C -0.260 4.260 24 N -0.616 5.616 25 Si 0.797 3.203 26 H -0.215 1.215 27 H -0.195 1.195 28 H -0.226 1.226 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.182 0.818 35 H 0.265 0.735 36 H 0.174 0.826 37 H 0.161 0.839 38 H 0.254 0.746 39 H 0.242 0.758 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.208 0.792 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.016 -7.812 18.435 21.958 hybrid contribution -0.145 0.233 -1.112 1.145 sum 8.871 -7.579 17.323 20.886 Atomic orbital electron populations 1.21556 0.92182 1.02592 1.02096 1.22562 0.97631 0.98805 0.93402 0.90840 1.22339 0.81904 0.98566 0.97601 1.48261 1.12422 1.65474 1.07629 1.17100 0.82606 0.76367 0.85048 1.90635 1.83652 1.56996 1.14435 1.21179 0.95259 1.14241 0.94716 1.23579 0.97828 1.06353 0.95792 1.24623 0.95538 1.03174 0.85381 1.83717 1.39476 1.67341 1.16202 1.22120 0.86046 0.96878 0.92362 1.20446 1.08413 0.97117 0.84630 1.20445 0.76045 0.89073 0.83507 1.43521 1.70067 1.19343 1.06431 1.90770 1.49129 1.49214 1.58105 1.23257 1.01765 1.00735 0.78230 1.21448 0.92281 0.93753 0.86561 0.91188 1.42437 1.86479 1.06099 1.00716 1.19604 1.40536 0.92863 0.84263 0.90336 1.25471 1.03384 0.95829 1.01296 1.69811 1.58228 1.04022 1.29511 0.85234 0.77578 0.77238 0.80256 1.21453 1.19496 1.22619 0.91633 0.90779 0.93301 0.90145 0.90317 0.81775 0.73528 0.82574 0.83855 0.74638 0.75830 0.91844 0.91840 0.79155 0.94047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 9.31 71.98 0.67 -2.74 16 2 C -0.10 -3.25 3.27 -9.40 -0.03 -3.28 16 3 H 0.07 2.46 8.01 -2.39 -0.02 2.44 16 4 C 0.12 3.51 6.38 86.85 0.55 4.07 16 5 N -0.61 -20.71 3.33 -815.71 -2.71 -23.42 16 6 C 0.60 21.35 7.84 86.65 0.68 22.03 16 7 O -0.57 -21.16 15.10 -4.07 -0.06 -21.22 16 8 C -0.25 -8.27 6.25 -18.99 -0.12 -8.39 16 9 C -0.22 -6.59 9.42 23.65 0.22 -6.37 16 10 C -0.02 -0.54 12.03 66.89 0.80 0.27 16 11 O -0.17 -4.55 10.52 4.47 0.05 -4.50 16 12 C 0.08 2.27 5.87 25.26 0.15 2.42 16 13 C -0.07 -1.35 5.70 29.10 0.17 -1.18 16 14 C 0.52 12.20 8.09 87.66 0.71 12.91 16 15 N -0.83 -10.41 8.87 -173.53 -1.54 -11.95 16 16 O -0.59 -20.46 16.87 -3.03 -0.05 -20.51 16 17 C 0.09 3.06 4.75 86.73 0.41 3.47 16 18 C 0.17 6.34 3.09 46.18 0.14 6.48 16 19 H 0.07 2.61 7.98 -2.39 -0.02 2.59 16 20 N -0.72 -33.67 5.15 -317.33 -1.63 -35.30 16 21 C -0.24 -12.50 9.96 84.03 0.84 -11.67 16 22 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 23 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 24 N -0.97 -56.64 13.06 21.65 0.28 -56.35 16 25 Si 0.97 44.30 29.55 68.60 2.03 46.33 16 26 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 29 H 0.06 1.60 8.07 -2.38 -0.02 1.58 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 2.30 8.04 -2.39 -0.02 2.29 16 33 H 0.08 2.16 7.98 -2.39 -0.02 2.14 16 34 H 0.16 5.16 4.87 -2.91 -0.01 5.15 16 35 H 0.25 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.16 1.66 8.14 -2.39 -0.02 1.65 16 37 H 0.14 2.89 6.49 -2.39 -0.02 2.87 16 38 H 0.42 1.98 8.83 -92.71 -0.82 1.16 16 39 H 0.41 4.51 8.93 -92.71 -0.83 3.68 16 40 H 0.06 2.23 7.03 -2.39 -0.02 2.22 16 41 H 0.06 2.46 6.74 -2.39 -0.02 2.44 16 42 H 0.38 19.18 7.76 -92.71 -0.72 18.46 16 43 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -76.41 360.57 0.74 -75.67 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -1.28 Total: 36.44 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 5.66 Total: 14.82 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -5.60 Total: -127.03 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -0.07 Total: -46.24 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -76.41 0.74 -75.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055015306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.909 kcal (2) G-P(sol) polarization free energy of solvation -76.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds