Wall clock time and date at job start Fri Apr 10 2020 18:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41262 * 126.70693 * 2 1 4 4 C 1.36827 * 103.84513 * 180.02562 * 3 2 1 5 5 C 1.47514 * 126.94268 * 179.97438 * 4 3 2 6 6 O 1.21582 * 119.99825 * 3.43779 * 5 4 3 7 7 N 1.34767 * 120.00151 * 183.44263 * 5 4 3 8 8 C 1.46985 * 120.72317 * 354.75174 * 7 5 4 9 9 C 1.53153 * 108.44840 * 125.43998 * 8 7 5 10 10 C 1.52505 * 109.79680 * 54.51988 * 9 8 7 11 11 H 1.09001 * 108.93339 * 180.34317 * 10 9 8 12 12 O 1.42690 * 110.62895 * 61.30124 * 10 9 8 13 13 C 1.43070 * 113.87108 * 174.63763 * 12 10 9 14 14 C 1.52816 * 109.51608 * 61.51719 * 13 12 10 15 15 N 1.47168 * 108.92281 * 308.65448 * 14 13 12 16 16 C 1.36935 * 121.22117 * 230.90424 * 15 14 13 17 17 H 1.08011 * 119.99891 * 153.67323 * 16 15 14 18 18 C 1.38815 * 120.00569 * 333.67187 * 16 15 14 19 19 N 1.31614 * 119.99493 * 334.49379 * 18 16 15 20 20 Si 1.86794 * 120.00041 * 154.48709 * 18 16 15 21 21 H 1.48500 * 109.47209 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47457 * 300.00364 * 20 18 16 23 23 H 1.48498 * 109.47361 * 60.00348 * 20 18 16 24 24 C 1.47592 * 117.55258 * 50.64023 * 15 14 13 25 25 H 1.09000 * 110.31229 * 186.93288 * 24 15 14 26 26 C 1.46797 * 120.72584 * 174.73301 * 7 5 4 27 27 O 1.34634 * 106.11403 * 0.24224 * 4 3 2 28 28 N 1.20890 * 111.46771 * 359.56461 * 27 4 3 29 29 H 1.09002 * 109.47073 * 90.00390 * 1 2 3 30 30 H 1.09001 * 109.47705 * 210.00357 * 1 2 3 31 31 H 1.09005 * 109.46983 * 330.00531 * 1 2 3 32 32 H 1.07998 * 128.07570 * 0.02973 * 3 2 1 33 33 H 1.08998 * 109.64221 * 245.13134 * 8 7 5 34 34 H 1.09003 * 109.63457 * 5.75335 * 8 7 5 35 35 H 1.09002 * 109.41385 * 174.62115 * 9 8 7 36 36 H 1.09001 * 109.41686 * 294.42034 * 9 8 7 37 37 H 1.08999 * 109.47947 * 181.63999 * 13 12 10 38 38 H 1.09001 * 109.48077 * 301.65685 * 13 12 10 39 39 H 1.09004 * 109.53246 * 188.79546 * 14 13 12 40 40 H 1.09003 * 109.43974 * 68.46672 * 14 13 12 41 41 H 0.97002 * 120.00188 * 354.26653 * 19 18 16 42 42 H 1.08996 * 109.52533 * 114.41093 * 26 7 5 43 43 H 1.09008 * 109.57134 * 354.25215 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6009 -0.0006 5 6 4.8871 1.3428 -0.0014 6 8 4.8839 2.5570 0.0616 7 7 6.0554 0.6748 -0.0720 8 6 6.0840 -0.7942 -0.0333 9 6 6.8431 -1.2968 -1.2648 10 6 8.2204 -0.6447 -1.3243 11 1 8.7455 -1.0071 -2.2081 12 8 8.9891 -0.9873 -0.1720 13 6 10.3377 -0.5114 -0.2131 14 6 10.3385 1.0152 -0.2817 15 7 9.4533 1.4442 -1.3764 16 6 9.8804 2.3309 -2.3285 17 1 9.4360 2.3219 -3.3129 18 6 10.8844 3.2414 -2.0286 19 7 11.0818 3.6166 -0.7826 20 14 11.9555 3.9338 -3.3934 21 1 12.9455 4.8775 -2.8152 22 1 12.6693 2.8237 -4.0740 23 1 11.1034 4.6503 -4.3761 24 6 8.0904 0.8791 -1.4136 25 1 7.5821 1.1771 -2.3307 26 6 7.3272 1.3985 -0.1897 27 8 3.4539 -0.7361 -0.0064 28 7 2.2847 -1.0433 -0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 2.0678 2.1746 0.0004 33 1 6.5924 -1.1271 0.8716 34 1 5.0650 -1.1809 -0.0479 35 1 6.9570 -2.3792 -1.2034 36 1 6.2827 -1.0428 -2.1645 37 1 10.8654 -0.8364 0.6835 38 1 10.8379 -0.9124 -1.0947 39 1 11.3515 1.3711 -0.4698 40 1 9.9754 1.4210 0.6626 41 1 10.4746 3.3226 -0.0856 42 1 7.9237 1.2351 0.7078 43 1 7.1313 2.4643 -0.3079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074163601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:56 Heat of formation + Delta-G solvation = 28.167403 kcal Electronic energy + Delta-G solvation = -28449.832541 eV Core-core repulsion = 24500.137856 eV Total energy + Delta-G solvation = -3949.694685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.18702 -40.26346 -38.76686 -36.17400 -35.02809 -34.98106 -32.54074 -31.75249 -31.45151 -29.68448 -28.97414 -27.50447 -25.62502 -23.94329 -23.49751 -22.97536 -22.56757 -21.38210 -19.96414 -18.69947 -17.96463 -17.74490 -17.39789 -16.54945 -16.02158 -15.72816 -15.34634 -15.08095 -14.52538 -14.23687 -14.17113 -13.94682 -13.74364 -13.68448 -13.59341 -13.42760 -13.06967 -12.72927 -12.53162 -12.39141 -12.11465 -11.63352 -11.49186 -11.38344 -10.91227 -10.69661 -10.56110 -10.45013 -10.32931 -10.15072 -10.10141 -9.95239 -9.85965 -9.56765 -9.20862 -8.60518 -8.39606 -7.02534 -6.18522 -3.36160 0.69207 1.85219 2.45038 2.98475 3.10495 3.45268 3.47340 3.65853 3.81503 4.12365 4.20328 4.45867 4.62014 4.77638 4.92090 5.04442 5.07062 5.14679 5.19010 5.24426 5.30959 5.42636 5.45301 5.52069 5.60418 5.74775 5.79503 5.82339 5.91114 5.93676 6.04322 6.09951 6.14417 6.26055 6.40068 6.50930 6.67058 6.75158 6.94121 7.35747 7.68858 7.81925 7.86149 8.07443 8.42246 8.91529 9.68571 10.09676 11.09495 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020892 B = 0.003593 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.904164 B = 7791.073688 C = 8564.594017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.012 3.988 3 C -0.158 4.158 4 C -0.069 4.069 5 C 0.594 3.406 6 O -0.515 6.515 7 N -0.588 5.588 8 C 0.098 3.902 9 C -0.121 4.121 10 C 0.080 3.920 11 H 0.055 0.945 12 O -0.385 6.385 13 C 0.046 3.954 14 C 0.114 3.886 15 N -0.590 5.590 16 C -0.354 4.354 17 H 0.060 0.940 18 C -0.019 4.019 19 N -0.909 5.909 20 Si 1.066 2.934 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.292 1.292 24 C 0.136 3.864 25 H 0.079 0.921 26 C 0.103 3.897 27 O 0.112 5.888 28 N -0.354 5.354 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.182 0.818 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.088 0.912 40 H 0.027 0.973 41 H 0.270 0.730 42 H 0.073 0.927 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 -10.392 1.797 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.180 4.180 4 C -0.135 4.135 5 C 0.379 3.621 6 O -0.391 6.391 7 N -0.320 5.320 8 C -0.025 4.025 9 C -0.160 4.160 10 C 0.021 3.979 11 H 0.073 0.927 12 O -0.304 6.304 13 C -0.032 4.032 14 C -0.011 4.011 15 N -0.313 5.313 16 C -0.483 4.483 17 H 0.078 0.922 18 C -0.222 4.222 19 N -0.548 5.548 20 Si 0.895 3.105 21 H -0.210 1.210 22 H -0.220 1.220 23 H -0.219 1.219 24 C 0.027 3.973 25 H 0.097 0.903 26 C -0.020 4.020 27 O 0.044 5.956 28 N -0.060 5.060 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.200 0.800 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.919 -10.115 1.640 17.284 hybrid contribution -1.252 -0.014 0.106 1.256 sum -15.171 -10.129 1.746 18.324 Atomic orbital electron populations 1.20200 0.85388 1.04032 1.03644 1.23611 0.99246 0.88364 1.03357 1.22863 0.89975 1.01729 1.03441 1.24441 0.97541 0.83688 1.07799 1.16743 0.80945 0.86152 0.78304 1.90879 1.85563 1.11937 1.50702 1.48231 1.06320 1.07673 1.69810 1.22189 1.01844 0.78727 0.99697 1.21788 0.94725 1.01002 0.98449 1.22240 0.91317 0.95502 0.88861 0.92651 1.87735 1.23695 1.77248 1.41764 1.23089 0.82551 0.96752 1.00805 1.21575 0.97334 0.91249 0.90973 1.44360 1.05848 1.50653 1.30429 1.19963 1.23338 1.13460 0.91512 0.92184 1.25902 1.00529 0.94454 1.01345 1.70796 1.41026 1.41433 1.01586 0.83506 0.76449 0.76052 0.74455 1.20997 1.21974 1.21851 1.21635 0.87446 0.91784 0.96418 0.90310 1.22528 0.81051 0.97668 1.00745 1.85072 1.20645 1.22308 1.67551 1.73701 0.89970 1.24781 1.17550 0.89919 0.90330 0.89746 0.80025 0.89813 0.88386 0.89891 0.90278 0.89755 0.93640 0.89338 0.95464 0.91914 0.90899 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.47 36.00 0.38 -0.13 16 2 C 0.01 0.13 7.31 -82.17 -0.60 -0.47 16 3 C -0.16 -1.85 10.92 -38.94 -0.43 -2.28 16 4 C -0.07 -0.95 7.00 -36.31 -0.25 -1.20 16 5 C 0.59 9.86 7.69 -12.48 -0.10 9.76 16 6 O -0.51 -10.18 16.35 5.29 0.09 -10.10 16 7 N -0.59 -9.58 2.96 -174.02 -0.52 -10.09 16 8 C 0.10 1.32 6.18 -3.70 -0.02 1.29 16 9 C -0.12 -1.61 5.82 -26.91 -0.16 -1.76 16 10 C 0.08 1.37 2.73 -26.89 -0.07 1.29 16 11 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 12 O -0.39 -6.83 9.59 -35.23 -0.34 -7.17 16 13 C 0.05 0.83 6.96 37.06 0.26 1.09 16 14 C 0.11 2.53 4.33 -3.77 -0.02 2.51 16 15 N -0.59 -13.99 2.58 -164.12 -0.42 -14.41 16 16 C -0.35 -9.48 9.58 -15.06 -0.14 -9.63 16 17 H 0.06 1.62 7.95 -52.48 -0.42 1.21 16 18 C -0.02 -0.53 4.71 -17.43 -0.08 -0.61 16 19 N -0.91 -26.31 12.44 55.49 0.69 -25.62 16 20 Si 1.07 24.52 29.99 -169.99 -5.10 19.42 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.14 2.73 3.03 -67.08 -0.20 2.52 16 25 H 0.08 1.65 7.99 -51.93 -0.42 1.24 16 26 C 0.10 2.01 5.61 -3.72 -0.02 1.99 16 27 O 0.11 1.44 7.74 15.57 0.12 1.56 16 28 N -0.35 -4.46 12.04 33.52 0.40 -4.05 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.18 1.82 8.06 -52.49 -0.42 1.39 16 33 H 0.08 1.13 7.95 -51.93 -0.41 0.71 16 34 H 0.10 1.18 3.80 -54.78 -0.21 0.98 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 39 H 0.09 2.17 6.43 -51.93 -0.33 1.84 16 40 H 0.03 0.62 6.84 -51.93 -0.36 0.27 16 41 H 0.27 7.87 6.66 -40.82 -0.27 7.60 16 42 H 0.07 1.48 6.58 -51.93 -0.34 1.14 16 43 H 0.09 2.05 7.03 -51.92 -0.37 1.69 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -31.13 341.74 -7.10 -38.24 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.72 Total: 2.68 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.46 Total: 4.39 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.16 Total: -54.18 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.13 Total: -15.70 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.10 Total: 19.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.13 -7.10 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.406 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds