Wall clock time and date at job start Fri Apr 10 2020 18:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41262 * 126.70693 * 2 1 4 4 C 1.36827 * 103.84513 * 180.02562 * 3 2 1 5 5 C 1.47514 * 126.94268 * 179.97438 * 4 3 2 6 6 O 1.21582 * 119.99825 * 3.43779 * 5 4 3 7 7 N 1.34767 * 120.00151 * 183.44263 * 5 4 3 8 8 C 1.46985 * 120.72317 * 354.75174 * 7 5 4 9 9 C 1.53153 * 108.44840 * 125.43998 * 8 7 5 10 10 C 1.52505 * 109.79680 * 54.51988 * 9 8 7 11 11 H 1.09001 * 108.93339 * 180.34317 * 10 9 8 12 12 O 1.42690 * 110.62895 * 61.30124 * 10 9 8 13 13 C 1.43070 * 113.87108 * 174.63763 * 12 10 9 14 14 C 1.52816 * 109.51608 * 61.51719 * 13 12 10 15 15 N 1.47168 * 108.92281 * 308.65448 * 14 13 12 16 16 C 1.36935 * 121.22117 * 230.90424 * 15 14 13 17 17 H 1.08011 * 119.99891 * 153.67323 * 16 15 14 18 18 C 1.38815 * 120.00569 * 333.67187 * 16 15 14 19 19 N 1.31614 * 119.99493 * 334.49379 * 18 16 15 20 20 Si 1.86794 * 120.00041 * 154.48709 * 18 16 15 21 21 H 1.48500 * 109.47209 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47457 * 300.00364 * 20 18 16 23 23 H 1.48498 * 109.47361 * 60.00348 * 20 18 16 24 24 C 1.47592 * 117.55258 * 50.64023 * 15 14 13 25 25 H 1.09000 * 110.31229 * 186.93288 * 24 15 14 26 26 C 1.46797 * 120.72584 * 174.73301 * 7 5 4 27 27 O 1.34634 * 106.11403 * 0.24224 * 4 3 2 28 28 N 1.20890 * 111.46771 * 359.56461 * 27 4 3 29 29 H 1.09002 * 109.47073 * 90.00390 * 1 2 3 30 30 H 1.09001 * 109.47705 * 210.00357 * 1 2 3 31 31 H 1.09005 * 109.46983 * 330.00531 * 1 2 3 32 32 H 1.07998 * 128.07570 * 0.02973 * 3 2 1 33 33 H 1.08998 * 109.64221 * 245.13134 * 8 7 5 34 34 H 1.09003 * 109.63457 * 5.75335 * 8 7 5 35 35 H 1.09002 * 109.41385 * 174.62115 * 9 8 7 36 36 H 1.09001 * 109.41686 * 294.42034 * 9 8 7 37 37 H 1.08999 * 109.47947 * 181.63999 * 13 12 10 38 38 H 1.09001 * 109.48077 * 301.65685 * 13 12 10 39 39 H 1.09004 * 109.53246 * 188.79546 * 14 13 12 40 40 H 1.09003 * 109.43974 * 68.46672 * 14 13 12 41 41 H 0.97002 * 120.00188 * 354.26653 * 19 18 16 42 42 H 1.08996 * 109.52533 * 114.41093 * 26 7 5 43 43 H 1.09008 * 109.57134 * 354.25215 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6009 -0.0006 5 6 4.8871 1.3428 -0.0014 6 8 4.8839 2.5570 0.0616 7 7 6.0554 0.6748 -0.0720 8 6 6.0840 -0.7942 -0.0333 9 6 6.8431 -1.2968 -1.2648 10 6 8.2204 -0.6447 -1.3243 11 1 8.7455 -1.0071 -2.2081 12 8 8.9891 -0.9873 -0.1720 13 6 10.3377 -0.5114 -0.2131 14 6 10.3385 1.0152 -0.2817 15 7 9.4533 1.4442 -1.3764 16 6 9.8804 2.3309 -2.3285 17 1 9.4360 2.3219 -3.3129 18 6 10.8844 3.2414 -2.0286 19 7 11.0818 3.6166 -0.7826 20 14 11.9555 3.9338 -3.3934 21 1 12.9455 4.8775 -2.8152 22 1 12.6693 2.8237 -4.0740 23 1 11.1034 4.6503 -4.3761 24 6 8.0904 0.8791 -1.4136 25 1 7.5821 1.1771 -2.3307 26 6 7.3272 1.3985 -0.1897 27 8 3.4539 -0.7361 -0.0064 28 7 2.2847 -1.0433 -0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 2.0678 2.1746 0.0004 33 1 6.5924 -1.1271 0.8716 34 1 5.0650 -1.1809 -0.0479 35 1 6.9570 -2.3792 -1.2034 36 1 6.2827 -1.0428 -2.1645 37 1 10.8654 -0.8364 0.6835 38 1 10.8379 -0.9124 -1.0947 39 1 11.3515 1.3711 -0.4698 40 1 9.9754 1.4210 0.6626 41 1 10.4746 3.3226 -0.0856 42 1 7.9237 1.2351 0.7078 43 1 7.1313 2.4643 -0.3079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074163601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:55 Heat of formation + Delta-G solvation = 7.572520 kcal Electronic energy + Delta-G solvation = -28450.725602 eV Core-core repulsion = 24500.137856 eV Total energy + Delta-G solvation = -3950.587746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.13162 -41.69145 -40.24171 -37.55549 -36.75291 -35.93183 -33.88578 -33.23846 -32.91369 -31.18220 -29.68730 -29.24362 -27.00125 -25.59022 -24.94193 -24.21801 -23.74060 -22.86600 -21.16237 -20.17176 -19.56686 -18.93239 -18.71313 -17.78262 -17.31785 -17.21612 -16.79060 -16.69070 -16.02030 -15.70378 -15.58963 -15.42172 -15.19641 -14.96555 -14.40592 -14.31629 -14.21354 -14.00166 -13.96625 -13.63871 -13.59861 -13.13757 -12.90170 -12.49268 -12.44567 -12.42874 -12.16080 -11.94386 -11.87917 -11.74362 -11.46927 -11.23926 -11.16782 -10.91777 -10.88498 -10.44489 -9.96272 -8.97504 -8.30879 -5.47812 -0.38684 0.97034 1.26485 1.57548 1.63736 1.73804 1.83152 1.90969 2.59075 2.76442 3.00325 3.10159 3.15152 3.32516 3.62429 3.74359 3.82005 3.96531 4.00517 4.02881 4.12145 4.25751 4.30975 4.36475 4.43275 4.47935 4.66470 4.69637 4.70691 4.72419 4.76086 4.82475 4.87405 4.89753 5.01869 5.13632 5.16798 5.19671 5.26530 5.73856 6.04455 6.20804 6.30238 6.62360 6.89825 7.00481 7.65083 8.07989 8.93022 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020892 B = 0.003593 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.904164 B = 7791.073688 C = 8564.594017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.022 3.978 3 C -0.146 4.146 4 C -0.087 4.087 5 C 0.595 3.405 6 O -0.556 6.556 7 N -0.588 5.588 8 C 0.099 3.901 9 C -0.113 4.113 10 C 0.087 3.913 11 H 0.054 0.946 12 O -0.380 6.380 13 C 0.057 3.943 14 C 0.120 3.880 15 N -0.608 5.608 16 C -0.359 4.359 17 H 0.053 0.947 18 C -0.069 4.069 19 N -0.936 5.936 20 Si 1.116 2.884 21 H -0.292 1.292 22 H -0.276 1.276 23 H -0.279 1.279 24 C 0.133 3.867 25 H 0.065 0.935 26 C 0.122 3.878 27 O 0.108 5.892 28 N -0.365 5.365 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.197 0.803 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.011 0.989 41 H 0.255 0.745 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.039 -12.686 1.246 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C -0.168 4.168 4 C -0.152 4.152 5 C 0.382 3.618 6 O -0.436 6.436 7 N -0.320 5.320 8 C -0.022 4.022 9 C -0.152 4.152 10 C 0.027 3.973 11 H 0.072 0.928 12 O -0.298 6.298 13 C -0.021 4.021 14 C -0.005 4.005 15 N -0.332 5.332 16 C -0.488 4.488 17 H 0.071 0.929 18 C -0.266 4.266 19 N -0.577 5.577 20 Si 0.940 3.060 21 H -0.218 1.218 22 H -0.202 1.202 23 H -0.205 1.205 24 C 0.025 3.975 25 H 0.083 0.917 26 C -0.003 4.003 27 O 0.042 5.958 28 N -0.073 5.073 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.215 0.785 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.973 -12.475 1.089 20.296 hybrid contribution -0.786 0.691 0.295 1.087 sum -16.759 -11.785 1.384 20.534 Atomic orbital electron populations 1.20433 0.82358 1.05499 1.05074 1.24207 1.00917 0.87148 1.01333 1.23213 0.89374 1.02882 1.01339 1.23889 0.96542 0.84439 1.10343 1.17022 0.81787 0.85843 0.77155 1.90852 1.86372 1.13841 1.52497 1.48200 1.05159 1.08904 1.69691 1.22398 1.03258 0.76494 1.00075 1.21826 0.92001 1.02546 0.98786 1.22241 0.93464 0.92880 0.88699 0.92819 1.87756 1.23406 1.76603 1.42081 1.22982 0.83258 0.93331 1.02485 1.21470 0.95280 0.94125 0.89623 1.44552 1.07798 1.50547 1.30307 1.20180 1.23178 1.13536 0.91914 0.92929 1.27203 1.02002 0.94978 1.02449 1.70912 1.41410 1.43260 1.02147 0.82849 0.75005 0.75841 0.72337 1.21791 1.20172 1.20515 1.21760 0.85701 0.94166 0.95831 0.91683 1.21970 0.82541 0.95874 0.99894 1.85013 1.21120 1.21505 1.68208 1.73698 0.89929 1.25390 1.18242 0.88360 0.89521 0.87672 0.78542 0.89397 0.86380 0.86577 0.89165 0.86747 0.93286 0.92230 0.97121 0.93553 0.92093 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.47 71.23 0.75 0.01 16 2 C 0.02 0.41 7.31 43.55 0.32 0.73 16 3 C -0.15 -3.13 10.92 22.68 0.25 -2.88 16 4 C -0.09 -2.28 7.00 24.39 0.17 -2.11 16 5 C 0.60 19.96 7.69 86.69 0.67 20.63 16 6 O -0.56 -22.87 16.35 -3.97 -0.06 -22.94 16 7 N -0.59 -19.25 2.96 -822.73 -2.44 -21.68 16 8 C 0.10 2.47 6.18 86.34 0.53 3.00 16 9 C -0.11 -2.70 5.82 30.48 0.18 -2.53 16 10 C 0.09 2.84 2.73 30.49 0.08 2.92 16 11 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 12 O -0.38 -12.82 9.59 -148.98 -1.43 -14.24 16 13 C 0.06 2.03 6.96 71.92 0.50 2.53 16 14 C 0.12 5.50 4.33 86.19 0.37 5.88 16 15 N -0.61 -29.87 2.58 -673.15 -1.74 -31.60 16 16 C -0.36 -19.85 9.58 84.03 0.81 -19.04 16 17 H 0.05 2.93 7.95 -2.90 -0.02 2.90 16 18 C -0.07 -3.89 4.71 84.86 0.40 -3.49 16 19 N -0.94 -56.49 12.44 21.65 0.27 -56.22 16 20 Si 1.12 50.39 29.99 68.60 2.06 52.45 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 C 0.13 5.48 3.03 44.95 0.14 5.61 16 25 H 0.06 2.82 7.99 -2.39 -0.02 2.80 16 26 C 0.12 4.96 5.61 86.43 0.48 5.44 16 27 O 0.11 2.54 7.74 65.90 0.51 3.05 16 28 N -0.37 -8.23 12.04 -48.86 -0.59 -8.82 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.09 2.17 7.95 -2.39 -0.02 2.15 16 34 H 0.12 2.56 3.80 -47.63 -0.18 2.38 16 35 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 39 H 0.06 3.05 6.43 -2.39 -0.02 3.04 16 40 H 0.01 0.52 6.84 -2.39 -0.02 0.50 16 41 H 0.25 15.72 6.66 -92.71 -0.62 15.10 16 42 H 0.06 2.60 6.58 -2.39 -0.02 2.59 16 43 H 0.05 2.58 7.03 -2.38 -0.02 2.56 16 Total: -1.00 -70.91 341.74 3.24 -67.67 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 1.02 Total: 15.63 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 5.64 Total: 16.71 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -4.49 Total: -118.32 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.98 Total: -34.13 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.06 Total: 52.45 kcal Total: -70.91 3.24 -67.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074163601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.243 kcal (2) G-P(sol) polarization free energy of solvation -70.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds