Wall clock time and date at job start Fri Apr 10 2020 18:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35315 * 128.04207 * 2 1 4 4 O 1.34012 * 106.67228 * 180.02562 * 3 2 1 5 5 N 1.20913 * 111.84364 * 359.70568 * 4 3 2 6 6 C 1.30990 * 111.43599 * 0.48892 * 5 4 3 7 7 C 1.48332 * 126.93559 * 179.79638 * 6 5 4 8 8 O 1.21487 * 119.99906 * 173.33960 * 7 6 5 9 9 N 1.34774 * 119.99747 * 353.33960 * 7 6 5 10 10 C 1.46984 * 120.72207 * 173.78025 * 9 7 6 11 11 C 1.51056 * 108.67887 * 125.98940 * 10 9 7 12 12 C 1.52506 * 110.93195 * 53.63280 * 11 10 9 13 13 H 1.08996 * 108.40873 * 181.75615 * 12 11 10 14 14 O 1.42691 * 110.62694 * 62.38586 * 12 11 10 15 15 C 1.43073 * 113.87526 * 174.65561 * 14 12 11 16 16 C 1.53224 * 109.45036 * 61.65098 * 15 14 12 17 17 N 1.47180 * 108.69271 * 308.40973 * 16 15 14 18 18 C 1.36930 * 121.22380 * 230.92579 * 17 16 15 19 19 H 1.08001 * 119.99824 * 150.69316 * 18 17 16 20 20 C 1.38812 * 120.00568 * 330.69127 * 18 17 16 21 21 N 1.31621 * 119.99569 * 341.33748 * 20 18 17 22 22 Si 1.86795 * 120.00324 * 161.33227 * 20 18 17 23 23 H 1.48497 * 109.47112 * 60.00403 * 22 20 18 24 24 H 1.48498 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47354 * 300.00214 * 22 20 18 26 26 C 1.47590 * 117.55011 * 50.95130 * 17 16 15 27 27 H 1.08996 * 110.31389 * 187.70577 * 26 17 16 28 28 C 1.46799 * 120.72620 * 353.75805 * 9 7 6 29 29 H 1.09003 * 109.47448 * 270.00086 * 1 2 3 30 30 H 1.09007 * 109.47011 * 29.99977 * 1 2 3 31 31 H 1.09001 * 109.47368 * 149.99917 * 1 2 3 32 32 H 1.08000 * 126.65924 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.63926 * 245.12468 * 10 9 7 34 34 H 1.08999 * 109.63992 * 5.74544 * 10 9 7 35 35 H 1.09000 * 107.97817 * 293.74969 * 11 10 9 36 36 H 1.08997 * 109.71632 * 174.63672 * 11 10 9 37 37 H 1.08998 * 109.47724 * 181.64314 * 15 14 12 38 38 H 1.09006 * 109.47506 * 301.65416 * 15 14 12 39 39 H 1.09000 * 109.60736 * 188.65247 * 16 15 14 40 40 H 1.08996 * 109.60354 * 68.16846 * 16 15 14 41 41 H 0.97005 * 119.99721 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.51945 * 114.41301 * 28 9 7 43 43 H 1.08999 * 109.51647 * 354.22781 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5774 -0.0006 5 7 3.5988 -0.6317 0.0049 6 6 2.3836 -1.1205 -0.0006 7 6 1.9991 -2.5532 -0.0009 8 8 0.8317 -2.8688 0.1156 9 7 2.9448 -3.5046 -0.1305 10 6 2.6015 -4.9276 0.0028 11 6 3.0800 -5.6582 -1.2297 12 6 4.5607 -5.3926 -1.4800 13 1 4.8541 -5.9117 -2.3925 14 8 5.3494 -5.8811 -0.3958 15 6 6.7598 -5.7769 -0.6127 16 6 7.1426 -4.3028 -0.7809 17 7 6.2718 -3.7032 -1.8047 18 6 6.7935 -2.9952 -2.8542 19 1 6.2718 -2.9678 -3.7995 20 6 7.9928 -2.3128 -2.7034 21 7 8.4426 -2.0311 -1.4990 22 14 8.9684 -1.7945 -4.2097 23 1 8.1425 -0.8874 -5.0464 24 1 10.2019 -1.0872 -3.7813 25 1 9.3369 -2.9972 -4.9988 26 6 4.8154 -3.8924 -1.6581 27 1 4.2950 -3.5229 -2.5416 28 6 4.3400 -3.1425 -0.4083 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 2.0559 2.1074 -0.0004 33 1 3.0986 -5.3438 0.8790 34 1 1.5217 -5.0360 0.1044 35 1 2.4990 -5.3004 -2.0797 36 1 2.9197 -6.7294 -1.1077 37 1 7.2908 -6.1949 0.2425 38 1 7.0306 -6.3279 -1.5134 39 1 8.1831 -4.2290 -1.0972 40 1 7.0078 -3.7797 0.1658 41 1 9.2810 -1.5545 -1.3935 42 1 4.9641 -3.4185 0.4416 43 1 4.4102 -2.0683 -0.5794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074374084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:07 Heat of formation + Delta-G solvation = 29.659724 kcal Electronic energy + Delta-G solvation = -28985.230021 eV Core-core repulsion = 25035.600049 eV Total energy + Delta-G solvation = -3949.629973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.94722 -40.11067 -38.58984 -35.80564 -34.72447 -34.52674 -32.81460 -31.51472 -31.40841 -29.58741 -28.16037 -27.37523 -25.67923 -23.99759 -23.46796 -22.80323 -21.67597 -21.23833 -19.83997 -18.68129 -17.64095 -17.36648 -16.90714 -16.61526 -15.73889 -15.42626 -15.24381 -15.03736 -14.56102 -14.29866 -14.08014 -13.71229 -13.61150 -13.32899 -13.23982 -13.10268 -12.70229 -12.65876 -12.33038 -12.05281 -12.00904 -11.39061 -11.30558 -11.04902 -10.86170 -10.72742 -10.58214 -10.31842 -10.23843 -10.13247 -9.99836 -9.78848 -9.59558 -9.36760 -8.98984 -8.60240 -8.31123 -6.75271 -5.89309 -3.34623 1.32181 1.74130 2.99524 3.28326 3.32770 3.33925 3.38821 3.40020 4.08012 4.32253 4.38674 4.58500 4.85290 5.05442 5.13814 5.21823 5.26591 5.32578 5.38873 5.56604 5.58946 5.64382 5.67719 5.78781 5.80356 5.89887 5.96075 6.06101 6.10624 6.19536 6.20710 6.29073 6.32495 6.42046 6.61107 6.79622 6.90862 7.03693 7.40825 7.59176 7.69984 7.87170 8.11454 8.29031 8.35286 9.05321 9.67094 10.27229 11.18054 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.005629 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.324694 B = 4972.750069 C = 6760.288999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.156 4.156 3 C -0.072 4.072 4 O 0.124 5.876 5 N -0.304 5.304 6 C -0.032 4.032 7 C 0.597 3.403 8 O -0.541 6.541 9 N -0.589 5.589 10 C 0.118 3.882 11 C -0.123 4.123 12 C 0.081 3.919 13 H 0.053 0.947 14 O -0.386 6.386 15 C 0.039 3.961 16 C 0.140 3.860 17 N -0.579 5.579 18 C -0.262 4.262 19 H 0.066 0.934 20 C 0.013 3.987 21 N -0.893 5.893 22 Si 0.903 3.097 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.135 3.865 27 H 0.071 0.929 28 C 0.077 3.923 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.219 0.781 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.030 0.970 41 H 0.257 0.743 42 H 0.071 0.929 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 1.011 3.439 12.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.161 4.161 3 C -0.153 4.153 4 O 0.050 5.950 5 N -0.005 5.005 6 C -0.190 4.190 7 C 0.383 3.617 8 O -0.418 6.418 9 N -0.321 5.321 10 C -0.004 4.004 11 C -0.161 4.161 12 C 0.021 3.979 13 H 0.071 0.929 14 O -0.306 6.306 15 C -0.039 4.039 16 C 0.015 3.985 17 N -0.301 5.301 18 C -0.391 4.391 19 H 0.083 0.917 20 C -0.188 4.188 21 N -0.535 5.535 22 Si 0.732 3.268 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.027 3.973 27 H 0.089 0.911 28 C -0.047 4.047 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.236 0.764 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.070 0.245 3.708 11.677 hybrid contribution 0.199 0.732 -0.957 1.221 sum -10.871 0.977 2.751 11.256 Atomic orbital electron populations 1.20150 0.86843 1.03464 1.02902 1.21295 0.98858 0.90212 1.05699 1.25750 0.82842 1.01127 1.05575 1.84893 1.29250 1.15859 1.65029 1.74363 1.20733 0.91017 1.14348 1.23469 0.89500 0.97057 1.09014 1.16970 0.85083 0.82499 0.77183 1.90701 1.17581 1.81625 1.51922 1.48206 1.09938 1.06078 1.67887 1.21178 1.01368 0.79177 0.98633 1.21426 0.94904 1.00933 0.98883 1.22232 0.89997 0.95762 0.89885 0.92918 1.87727 1.17536 1.83502 1.41804 1.23315 0.80807 0.99792 0.99943 1.21384 0.96758 0.88187 0.92199 1.44219 0.97745 1.60420 1.27757 1.19046 1.05467 1.25175 0.89446 0.91664 1.25099 1.00404 0.96979 0.96308 1.70049 1.21680 1.41341 1.20414 0.86377 0.79553 0.78327 0.82540 1.20763 1.21499 1.20909 1.21573 0.87707 0.92425 0.95626 0.91072 1.23144 0.78146 1.03533 0.99835 0.90791 0.91290 0.89770 0.76411 0.90759 0.89156 0.90641 0.90138 0.90104 0.94035 0.89433 0.95151 0.93355 0.91115 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.97 36.01 0.36 -0.46 16 2 C -0.16 -2.09 6.34 -104.12 -0.66 -2.76 16 3 C -0.07 -0.82 12.24 29.69 0.36 -0.45 16 4 O 0.12 1.92 11.18 17.25 0.19 2.11 16 5 N -0.30 -5.58 8.64 33.30 0.29 -5.29 16 6 C -0.03 -0.55 6.89 -82.53 -0.57 -1.12 16 7 C 0.60 10.89 7.71 -12.11 -0.09 10.80 16 8 O -0.54 -10.14 14.86 5.38 0.08 -10.06 16 9 N -0.59 -10.67 2.96 -174.97 -0.52 -11.19 16 10 C 0.12 1.85 6.23 -4.76 -0.03 1.83 16 11 C -0.12 -1.84 5.67 -27.96 -0.16 -2.00 16 12 C 0.08 1.48 2.72 -26.88 -0.07 1.41 16 13 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 14 O -0.39 -7.38 9.72 -35.23 -0.34 -7.72 16 15 C 0.04 0.75 6.98 37.27 0.26 1.01 16 16 C 0.14 3.24 4.96 -3.56 -0.02 3.23 16 17 N -0.58 -14.07 2.72 -163.87 -0.45 -14.52 16 18 C -0.26 -6.99 9.64 -15.06 -0.15 -7.13 16 19 H 0.07 1.73 7.90 -52.49 -0.41 1.31 16 20 C 0.01 0.34 4.88 -17.43 -0.09 0.25 16 21 N -0.89 -25.04 11.50 55.49 0.64 -24.40 16 22 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.14 2.86 2.97 -67.07 -0.20 2.66 16 27 H 0.07 1.55 7.99 -51.93 -0.42 1.13 16 28 C 0.08 1.59 5.40 -3.72 -0.02 1.57 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.05 7.02 -51.93 -0.36 0.69 16 32 H 0.22 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.07 1.17 7.99 -51.93 -0.42 0.75 16 34 H 0.09 1.34 7.01 -51.93 -0.36 0.97 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.21 6.44 -51.93 -0.33 1.88 16 40 H 0.03 0.75 7.26 -51.93 -0.38 0.38 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.07 1.57 6.72 -51.93 -0.35 1.23 16 43 H 0.12 2.62 4.13 -58.69 -0.24 2.37 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -31.05 340.91 -6.86 -37.91 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.79 Total: 3.06 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.07 Total: 8.84 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.04 Total: -55.39 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.07 Total: -15.66 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.05 -6.86 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074374084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.571 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds