Wall clock time and date at job start Fri Apr 10 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35315 * 128.04207 * 2 1 4 4 O 1.34012 * 106.67228 * 180.02562 * 3 2 1 5 5 N 1.20913 * 111.84364 * 359.70568 * 4 3 2 6 6 C 1.30990 * 111.43599 * 0.48892 * 5 4 3 7 7 C 1.48332 * 126.93559 * 179.79638 * 6 5 4 8 8 O 1.21487 * 119.99906 * 173.33960 * 7 6 5 9 9 N 1.34774 * 119.99747 * 353.33960 * 7 6 5 10 10 C 1.46984 * 120.72207 * 173.78025 * 9 7 6 11 11 C 1.51056 * 108.67887 * 125.98940 * 10 9 7 12 12 C 1.52506 * 110.93195 * 53.63280 * 11 10 9 13 13 H 1.08996 * 108.40873 * 181.75615 * 12 11 10 14 14 O 1.42691 * 110.62694 * 62.38586 * 12 11 10 15 15 C 1.43073 * 113.87526 * 174.65561 * 14 12 11 16 16 C 1.53224 * 109.45036 * 61.65098 * 15 14 12 17 17 N 1.47180 * 108.69271 * 308.40973 * 16 15 14 18 18 C 1.36930 * 121.22380 * 230.92579 * 17 16 15 19 19 H 1.08001 * 119.99824 * 150.69316 * 18 17 16 20 20 C 1.38812 * 120.00568 * 330.69127 * 18 17 16 21 21 N 1.31621 * 119.99569 * 341.33748 * 20 18 17 22 22 Si 1.86795 * 120.00324 * 161.33227 * 20 18 17 23 23 H 1.48497 * 109.47112 * 60.00403 * 22 20 18 24 24 H 1.48498 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47354 * 300.00214 * 22 20 18 26 26 C 1.47590 * 117.55011 * 50.95130 * 17 16 15 27 27 H 1.08996 * 110.31389 * 187.70577 * 26 17 16 28 28 C 1.46799 * 120.72620 * 353.75805 * 9 7 6 29 29 H 1.09003 * 109.47448 * 270.00086 * 1 2 3 30 30 H 1.09007 * 109.47011 * 29.99977 * 1 2 3 31 31 H 1.09001 * 109.47368 * 149.99917 * 1 2 3 32 32 H 1.08000 * 126.65924 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.63926 * 245.12468 * 10 9 7 34 34 H 1.08999 * 109.63992 * 5.74544 * 10 9 7 35 35 H 1.09000 * 107.97817 * 293.74969 * 11 10 9 36 36 H 1.08997 * 109.71632 * 174.63672 * 11 10 9 37 37 H 1.08998 * 109.47724 * 181.64314 * 15 14 12 38 38 H 1.09006 * 109.47506 * 301.65416 * 15 14 12 39 39 H 1.09000 * 109.60736 * 188.65247 * 16 15 14 40 40 H 1.08996 * 109.60354 * 68.16846 * 16 15 14 41 41 H 0.97005 * 119.99721 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.51945 * 114.41301 * 28 9 7 43 43 H 1.08999 * 109.51647 * 354.22781 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5888 0.5774 -0.0006 5 7 3.5988 -0.6317 0.0049 6 6 2.3836 -1.1205 -0.0006 7 6 1.9991 -2.5532 -0.0009 8 8 0.8317 -2.8688 0.1156 9 7 2.9448 -3.5046 -0.1305 10 6 2.6015 -4.9276 0.0028 11 6 3.0800 -5.6582 -1.2297 12 6 4.5607 -5.3926 -1.4800 13 1 4.8541 -5.9117 -2.3925 14 8 5.3494 -5.8811 -0.3958 15 6 6.7598 -5.7769 -0.6127 16 6 7.1426 -4.3028 -0.7809 17 7 6.2718 -3.7032 -1.8047 18 6 6.7935 -2.9952 -2.8542 19 1 6.2718 -2.9678 -3.7995 20 6 7.9928 -2.3128 -2.7034 21 7 8.4426 -2.0311 -1.4990 22 14 8.9684 -1.7945 -4.2097 23 1 8.1425 -0.8874 -5.0464 24 1 10.2019 -1.0872 -3.7813 25 1 9.3369 -2.9972 -4.9988 26 6 4.8154 -3.8924 -1.6581 27 1 4.2950 -3.5229 -2.5416 28 6 4.3400 -3.1425 -0.4083 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 2.0559 2.1074 -0.0004 33 1 3.0986 -5.3438 0.8790 34 1 1.5217 -5.0360 0.1044 35 1 2.4990 -5.3004 -2.0797 36 1 2.9197 -6.7294 -1.1077 37 1 7.2908 -6.1949 0.2425 38 1 7.0306 -6.3279 -1.5134 39 1 8.1831 -4.2290 -1.0972 40 1 7.0078 -3.7797 0.1658 41 1 9.2810 -1.5545 -1.3935 42 1 4.9641 -3.4185 0.4416 43 1 4.4102 -2.0683 -0.5794 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074374084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:06 Heat of formation + Delta-G solvation = 9.434861 kcal Electronic energy + Delta-G solvation = -28986.107037 eV Core-core repulsion = 25035.600049 eV Total energy + Delta-G solvation = -3950.506989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.15009 -41.59851 -40.11733 -37.27853 -36.48084 -35.71505 -34.06511 -33.42001 -32.77999 -31.19185 -29.25890 -29.07674 -27.06191 -25.77464 -24.91012 -24.45133 -22.94622 -22.54988 -21.30443 -20.14511 -18.93872 -18.88322 -18.56069 -17.96560 -17.20411 -17.05740 -16.89261 -16.61016 -16.23438 -15.73784 -15.56170 -15.23004 -14.89975 -14.80285 -14.44050 -14.27817 -14.12631 -13.97620 -13.79818 -13.47724 -13.32638 -13.07785 -12.81322 -12.65654 -12.50841 -12.37016 -12.26418 -12.09697 -11.80075 -11.65993 -11.40519 -11.31573 -11.11476 -10.76668 -10.52316 -10.36732 -9.84576 -8.69817 -7.93017 -5.42125 0.07990 0.72930 1.44930 1.46421 1.53568 1.67442 1.97410 2.30392 2.45427 2.83335 2.84088 3.21459 3.33363 3.55802 3.72840 3.86282 3.93859 4.07216 4.08779 4.15067 4.23486 4.34461 4.41543 4.46293 4.56686 4.57860 4.78508 4.80210 4.81660 4.83564 4.86664 4.90436 4.96019 5.07509 5.13657 5.23003 5.34784 5.43667 5.50478 5.58834 6.11950 6.25854 6.32027 6.76953 7.03476 7.15593 7.69081 8.27137 9.11766 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.005629 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.324694 B = 4972.750069 C = 6760.288999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.168 4.168 3 C -0.043 4.043 4 O 0.116 5.884 5 N -0.349 5.349 6 C -0.062 4.062 7 C 0.593 3.407 8 O -0.548 6.548 9 N -0.592 5.592 10 C 0.116 3.884 11 C -0.113 4.113 12 C 0.085 3.915 13 H 0.054 0.946 14 O -0.385 6.385 15 C 0.051 3.949 16 C 0.148 3.852 17 N -0.594 5.594 18 C -0.273 4.273 19 H 0.062 0.938 20 C -0.034 4.034 21 N -0.923 5.923 22 Si 0.965 3.035 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.132 3.868 27 H 0.060 0.940 28 C 0.096 3.904 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.277 0.723 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.003 0.997 41 H 0.253 0.747 42 H 0.046 0.954 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.453 1.202 2.974 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.174 4.174 3 C -0.123 4.123 4 O 0.042 5.958 5 N -0.050 5.050 6 C -0.219 4.219 7 C 0.380 3.620 8 O -0.426 6.426 9 N -0.324 5.324 10 C -0.005 4.005 11 C -0.152 4.152 12 C 0.025 3.975 13 H 0.072 0.928 14 O -0.304 6.304 15 C -0.027 4.027 16 C 0.023 3.977 17 N -0.317 5.317 18 C -0.403 4.403 19 H 0.080 0.920 20 C -0.232 4.232 21 N -0.567 5.567 22 Si 0.793 3.207 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.202 1.202 26 C 0.024 3.976 27 H 0.078 0.922 28 C -0.029 4.029 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.293 0.707 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.021 0.979 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.770 0.399 3.243 13.182 hybrid contribution 0.624 0.777 -0.780 1.265 sum -12.146 1.176 2.463 12.449 Atomic orbital electron populations 1.20206 0.84832 1.04125 1.03656 1.21729 1.00213 0.89340 1.06081 1.26776 0.80562 1.02937 1.01995 1.84825 1.31429 1.14946 1.64636 1.74343 1.21840 0.92332 1.16504 1.23699 0.90443 0.97470 1.10267 1.17190 0.84955 0.83130 0.76734 1.90679 1.17584 1.82007 1.52329 1.48206 1.08841 1.07293 1.68062 1.21349 1.02181 0.77846 0.99100 1.21418 0.92127 1.02837 0.98777 1.22245 0.92060 0.93259 0.89907 0.92838 1.87742 1.17319 1.83093 1.42207 1.23190 0.81262 0.96728 1.01541 1.21216 0.95395 0.90619 0.90483 1.44394 0.99287 1.60560 1.27495 1.19301 1.05818 1.25076 0.90112 0.92004 1.25797 1.01274 0.97354 0.98725 1.70193 1.21815 1.42425 1.22236 0.85393 0.77905 0.77993 0.79419 1.20342 1.21725 1.20218 1.21683 0.85857 0.94746 0.95293 0.92223 1.22672 0.79221 1.02621 0.98382 0.89918 0.87725 0.91949 0.70727 0.90719 0.87828 0.89781 0.86928 0.87339 0.93358 0.92001 0.97880 0.93802 0.93561 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 9.97 71.24 0.71 -0.65 16 2 C -0.17 -4.27 6.34 -19.54 -0.12 -4.39 16 3 C -0.04 -0.85 12.24 67.14 0.82 -0.03 16 4 O 0.12 3.55 11.18 71.91 0.80 4.36 16 5 N -0.35 -13.17 8.64 -49.50 -0.43 -13.60 16 6 C -0.06 -2.16 6.89 42.96 0.30 -1.86 16 7 C 0.59 21.84 7.71 86.93 0.67 22.51 16 8 O -0.55 -20.32 14.86 -3.68 -0.05 -20.38 16 9 N -0.59 -21.65 2.96 -825.77 -2.45 -24.09 16 10 C 0.12 3.50 6.23 85.65 0.53 4.04 16 11 C -0.11 -3.16 5.67 29.80 0.17 -2.99 16 12 C 0.08 3.02 2.72 30.50 0.08 3.11 16 13 H 0.05 1.92 8.13 -2.39 -0.02 1.91 16 14 O -0.38 -14.26 9.72 -148.98 -1.45 -15.71 16 15 C 0.05 1.91 6.98 72.06 0.50 2.41 16 16 C 0.15 7.10 4.96 86.32 0.43 7.53 16 17 N -0.59 -29.77 2.72 -672.37 -1.83 -31.60 16 18 C -0.27 -14.95 9.64 84.03 0.81 -14.14 16 19 H 0.06 3.35 7.90 -2.91 -0.02 3.33 16 20 C -0.03 -1.87 4.88 84.86 0.41 -1.46 16 21 N -0.92 -53.60 11.50 21.65 0.25 -53.35 16 22 Si 0.97 44.15 29.59 68.60 2.03 46.18 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 C 0.13 5.69 2.97 44.95 0.13 5.83 16 27 H 0.06 2.67 7.99 -2.39 -0.02 2.65 16 28 C 0.10 4.09 5.40 86.43 0.47 4.55 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.06 1.48 7.02 -2.39 -0.02 1.47 16 32 H 0.28 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.07 2.25 7.99 -2.39 -0.02 2.23 16 34 H 0.10 2.89 7.01 -2.39 -0.02 2.87 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.06 3.25 6.44 -2.39 -0.02 3.23 16 40 H 0.00 0.16 7.26 -2.39 -0.02 0.15 16 41 H 0.25 14.25 8.31 -92.70 -0.77 13.47 16 42 H 0.05 2.17 6.72 -2.39 -0.02 2.15 16 43 H 0.10 4.79 4.13 -15.75 -0.07 4.72 16 Total: -1.00 -70.80 340.91 3.78 -67.02 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.98 Total: 16.71 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 5.92 Total: 24.46 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -4.45 Total: -122.64 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.70 Total: -31.73 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.80 3.78 -67.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074374084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.457 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds