Wall clock time and date at job start Fri Apr 10 2020 18:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35313 * 128.03742 * 2 1 4 4 O 1.34012 * 106.66668 * 180.02562 * 3 2 1 5 5 N 1.20906 * 111.84793 * 0.02562 * 4 3 2 6 6 C 1.30989 * 111.43856 * 359.70546 * 5 4 3 7 7 C 1.48334 * 126.93984 * 180.29206 * 6 5 4 8 8 O 1.21493 * 119.99710 * 174.32005 * 7 6 5 9 9 N 1.34774 * 119.99882 * 354.31531 * 7 6 5 10 10 C 1.46988 * 120.74191 * 4.81813 * 9 7 6 11 11 C 1.52716 * 108.68975 * 234.57654 * 10 9 7 12 12 C 1.52486 * 109.90336 * 305.73144 * 11 10 9 13 13 H 1.08992 * 108.33214 * 179.00422 * 12 11 10 14 14 O 1.42674 * 110.67462 * 298.31625 * 12 11 10 15 15 C 1.43093 * 113.86761 * 185.42406 * 14 12 11 16 16 C 1.53225 * 109.41308 * 298.30721 * 15 14 12 17 17 N 1.47173 * 108.70264 * 51.63844 * 16 15 14 18 18 C 1.36939 * 121.20614 * 129.07089 * 17 16 15 19 19 H 1.07995 * 119.99954 * 214.96062 * 18 17 16 20 20 C 1.38810 * 120.00215 * 34.96146 * 18 17 16 21 21 N 1.31624 * 120.00072 * 355.69102 * 20 18 17 22 22 Si 1.86804 * 120.00084 * 175.69132 * 20 18 17 23 23 H 1.48495 * 109.46797 * 60.00221 * 22 20 18 24 24 H 1.48497 * 109.46963 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46980 * 299.99859 * 22 20 18 26 26 C 1.47578 * 117.58459 * 309.08960 * 17 16 15 27 27 H 1.09005 * 110.28242 * 173.10310 * 26 17 16 28 28 C 1.46801 * 120.73928 * 185.09807 * 9 7 6 29 29 H 1.09000 * 109.47512 * 90.01919 * 1 2 3 30 30 H 1.09005 * 109.46838 * 330.01855 * 1 2 3 31 31 H 1.09003 * 109.47602 * 210.02443 * 1 2 3 32 32 H 1.08001 * 126.66707 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.64191 * 354.31206 * 10 9 7 34 34 H 1.09000 * 109.63735 * 114.93311 * 10 9 7 35 35 H 1.09000 * 109.48084 * 185.53062 * 11 10 9 36 36 H 1.09009 * 109.27006 * 65.79744 * 11 10 9 37 37 H 1.09000 * 109.48035 * 178.33158 * 15 14 12 38 38 H 1.09000 * 109.48979 * 58.29834 * 15 14 12 39 39 H 1.09000 * 109.60618 * 291.87193 * 16 15 14 40 40 H 1.08998 * 109.59906 * 171.39795 * 16 15 14 41 41 H 0.96994 * 120.00038 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.52486 * 245.52652 * 28 9 7 43 43 H 1.08999 * 109.52759 * 5.71795 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0006 5 7 3.5988 -0.6316 -0.0014 6 6 2.3836 -1.1205 0.0047 7 6 1.9991 -2.5532 0.0119 8 8 0.8308 -2.8680 0.1213 9 7 2.9458 -3.5055 -0.1031 10 6 4.3714 -3.1484 -0.1306 11 6 5.0010 -3.7446 -1.3877 12 6 4.7293 -5.2440 -1.4433 13 1 5.1733 -5.6392 -2.3569 14 8 5.3148 -5.9040 -0.3221 15 6 5.2070 -7.3301 -0.3685 16 6 3.7276 -7.7293 -0.3661 17 7 3.0352 -6.9811 -1.4275 18 6 2.2462 -7.6197 -2.3467 19 1 2.2055 -7.2619 -3.3648 20 6 1.4985 -8.7268 -1.9697 21 7 1.6124 -9.2144 -0.7525 22 14 0.3309 -9.5249 -3.1901 23 1 1.0962 -9.9945 -4.3728 24 1 -0.3435 -10.6809 -2.5466 25 1 -0.6877 -8.5340 -3.6210 26 6 3.2225 -5.5177 -1.4657 27 1 2.7616 -5.1010 -2.3613 28 6 2.5760 -4.9222 -0.2097 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3633 0.8902 0.5136 31 1 -0.3634 -0.8898 0.5142 32 1 2.0559 2.1075 0.0004 33 1 4.4771 -2.0637 -0.1488 34 1 4.8675 -3.5531 0.7515 35 1 6.0771 -3.5718 -1.3723 36 1 4.5709 -3.2656 -2.2674 37 1 5.7009 -7.7605 0.5027 38 1 5.6823 -7.7014 -1.2764 39 1 3.2850 -7.4872 0.6002 40 1 3.6373 -8.7991 -0.5544 41 1 1.0897 -9.9878 -0.4890 42 1 2.9295 -5.4583 0.6711 43 1 1.4920 -5.0114 -0.2808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074374085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:10 Heat of formation + Delta-G solvation = 31.293241 kcal Electronic energy + Delta-G solvation = -28606.479301 eV Core-core repulsion = 24656.920163 eV Total energy + Delta-G solvation = -3949.559138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.21280 -40.07501 -38.55306 -35.86180 -34.82606 -34.59400 -32.77793 -31.58868 -31.45198 -29.45529 -28.35818 -27.46579 -25.68007 -24.00339 -23.49497 -22.69446 -21.81045 -21.38598 -20.06855 -18.49146 -17.89695 -17.56024 -16.98670 -16.76039 -15.63359 -15.44979 -15.25125 -15.00271 -14.58599 -14.32610 -14.10784 -13.74760 -13.58514 -13.41262 -13.34151 -13.17517 -12.83402 -12.57190 -12.33927 -12.18597 -11.93220 -11.40401 -11.29825 -11.02896 -10.87160 -10.73694 -10.44793 -10.34311 -10.25799 -10.12898 -10.11400 -9.81499 -9.61876 -9.56395 -8.94045 -8.59119 -8.29523 -6.65803 -5.88649 -3.43116 1.04601 1.56542 2.84334 3.10829 3.28242 3.34417 3.39649 3.40950 3.86396 4.33106 4.39949 4.44886 4.65690 4.89354 5.03061 5.16310 5.26484 5.32029 5.42278 5.49246 5.51436 5.59232 5.67338 5.70529 5.80387 5.98522 6.02472 6.11512 6.14459 6.16475 6.26200 6.34225 6.38870 6.47710 6.64636 6.71956 6.93347 7.15002 7.57483 7.60727 7.69387 7.90747 7.93594 8.27881 8.37687 9.09899 9.66584 10.28392 11.16952 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.004110 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.389612 B = 6811.792511 C = 7978.710804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.151 4.151 3 C -0.067 4.067 4 O 0.109 5.891 5 N -0.328 5.328 6 C -0.013 4.013 7 C 0.587 3.413 8 O -0.525 6.525 9 N -0.586 5.586 10 C 0.082 3.918 11 C -0.120 4.120 12 C 0.081 3.919 13 H 0.051 0.949 14 O -0.387 6.387 15 C 0.037 3.963 16 C 0.136 3.864 17 N -0.585 5.585 18 C -0.261 4.261 19 H 0.066 0.934 20 C 0.016 3.984 21 N -0.900 5.900 22 Si 0.906 3.094 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.135 3.865 27 H 0.075 0.925 28 C 0.106 3.894 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.221 0.779 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.026 0.974 40 H 0.105 0.895 41 H 0.258 0.742 42 H 0.072 0.928 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 18.559 1.675 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.156 4.156 3 C -0.148 4.148 4 O 0.040 5.960 5 N -0.034 5.034 6 C -0.172 4.172 7 C 0.372 3.628 8 O -0.401 6.401 9 N -0.319 5.319 10 C -0.041 4.041 11 C -0.159 4.159 12 C 0.022 3.978 13 H 0.069 0.931 14 O -0.307 6.307 15 C -0.041 4.041 16 C 0.010 3.990 17 N -0.307 5.307 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.184 4.184 21 N -0.543 5.543 22 Si 0.734 3.266 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.207 1.207 26 C 0.026 3.974 27 H 0.093 0.907 28 C -0.017 4.017 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.238 0.762 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.123 0.877 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.146 17.661 1.948 18.498 hybrid contribution -1.456 -0.501 -0.761 1.718 sum 3.690 17.160 1.187 17.592 Atomic orbital electron populations 1.20244 0.86620 1.03977 1.03257 1.21379 0.99152 0.90137 1.04927 1.25727 0.82512 1.01133 1.05462 1.84787 1.29561 1.15848 1.65789 1.73880 1.21151 0.91179 1.17155 1.23665 0.89269 0.97412 1.06847 1.17015 0.85537 0.82155 0.78078 1.90771 1.17645 1.81221 1.50419 1.48190 1.06478 1.07583 1.69618 1.22398 0.79843 1.03078 0.98777 1.21693 1.01299 0.94479 0.98384 1.22180 0.94758 0.91566 0.89344 0.93142 1.87723 1.78916 1.19704 1.44322 1.23400 1.00375 0.80205 1.00149 1.21612 0.86662 0.99639 0.91055 1.44177 1.54532 0.98438 1.33575 1.19069 1.18997 1.10817 0.90107 0.91653 1.25346 0.97382 0.99665 0.95979 1.69874 1.41802 1.24761 1.17869 0.86335 0.81333 0.78552 0.80335 1.20827 1.21436 1.20655 1.21621 0.92743 0.86989 0.96047 0.90728 1.22442 1.02012 0.76619 1.00627 0.90561 0.91133 0.89159 0.76240 0.86223 0.90731 0.90339 0.90802 0.90226 0.94205 0.95556 0.87696 0.93199 0.90943 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.07 36.01 0.36 -0.48 16 2 C -0.15 -1.72 6.34 -104.12 -0.66 -2.38 16 3 C -0.07 -0.54 12.24 29.69 0.36 -0.18 16 4 O 0.11 1.13 11.18 17.25 0.19 1.32 16 5 N -0.33 -4.31 8.51 33.30 0.28 -4.02 16 6 C -0.01 -0.19 6.95 -82.52 -0.57 -0.76 16 7 C 0.59 10.64 7.72 -12.11 -0.09 10.55 16 8 O -0.53 -10.86 14.74 5.37 0.08 -10.78 16 9 N -0.59 -10.65 2.97 -173.97 -0.52 -11.16 16 10 C 0.08 1.27 6.15 -3.92 -0.02 1.25 16 11 C -0.12 -1.81 5.80 -27.14 -0.16 -1.97 16 12 C 0.08 1.51 2.71 -26.91 -0.07 1.43 16 13 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 14 O -0.39 -7.54 9.63 -35.23 -0.34 -7.88 16 15 C 0.04 0.72 6.98 37.27 0.26 0.98 16 16 C 0.14 3.20 4.88 -3.56 -0.02 3.19 16 17 N -0.58 -14.48 2.71 -163.91 -0.44 -14.93 16 18 C -0.26 -7.05 9.64 -15.06 -0.15 -7.19 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C 0.02 0.44 5.33 -17.43 -0.09 0.34 16 21 N -0.90 -25.39 10.68 55.49 0.59 -24.79 16 22 Si 0.91 21.47 29.56 -169.99 -5.02 16.45 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.13 2.88 3.02 -67.10 -0.20 2.68 16 27 H 0.07 1.64 7.99 -51.93 -0.41 1.22 16 28 C 0.11 2.24 5.62 -3.72 -0.02 2.22 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.14 6.79 -51.93 -0.35 0.79 16 32 H 0.22 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.12 1.72 3.76 -73.81 -0.28 1.44 16 34 H 0.07 1.20 7.96 -51.93 -0.41 0.78 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.66 7.18 -51.93 -0.37 0.29 16 40 H 0.11 2.73 6.11 -51.93 -0.32 2.42 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.07 1.63 6.59 -51.93 -0.34 1.29 16 43 H 0.09 2.15 7.03 -51.93 -0.37 1.78 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -31.23 339.34 -6.92 -38.15 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.78 Total: 2.85 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -1.07 Total: 9.69 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.08 Total: -54.91 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.07 Total: -17.34 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.23 -6.92 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074374085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.440 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds