Wall clock time and date at job start Fri Apr 10 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35313 * 128.03742 * 2 1 4 4 O 1.34012 * 106.66668 * 180.02562 * 3 2 1 5 5 N 1.20906 * 111.84793 * 0.02562 * 4 3 2 6 6 C 1.30989 * 111.43856 * 359.70546 * 5 4 3 7 7 C 1.48334 * 126.93984 * 180.29206 * 6 5 4 8 8 O 1.21493 * 119.99710 * 174.32005 * 7 6 5 9 9 N 1.34774 * 119.99882 * 354.31531 * 7 6 5 10 10 C 1.46988 * 120.74191 * 4.81813 * 9 7 6 11 11 C 1.52716 * 108.68975 * 234.57654 * 10 9 7 12 12 C 1.52486 * 109.90336 * 305.73144 * 11 10 9 13 13 H 1.08992 * 108.33214 * 179.00422 * 12 11 10 14 14 O 1.42674 * 110.67462 * 298.31625 * 12 11 10 15 15 C 1.43093 * 113.86761 * 185.42406 * 14 12 11 16 16 C 1.53225 * 109.41308 * 298.30721 * 15 14 12 17 17 N 1.47173 * 108.70264 * 51.63844 * 16 15 14 18 18 C 1.36939 * 121.20614 * 129.07089 * 17 16 15 19 19 H 1.07995 * 119.99954 * 214.96062 * 18 17 16 20 20 C 1.38810 * 120.00215 * 34.96146 * 18 17 16 21 21 N 1.31624 * 120.00072 * 355.69102 * 20 18 17 22 22 Si 1.86804 * 120.00084 * 175.69132 * 20 18 17 23 23 H 1.48495 * 109.46797 * 60.00221 * 22 20 18 24 24 H 1.48497 * 109.46963 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46980 * 299.99859 * 22 20 18 26 26 C 1.47578 * 117.58459 * 309.08960 * 17 16 15 27 27 H 1.09005 * 110.28242 * 173.10310 * 26 17 16 28 28 C 1.46801 * 120.73928 * 185.09807 * 9 7 6 29 29 H 1.09000 * 109.47512 * 90.01919 * 1 2 3 30 30 H 1.09005 * 109.46838 * 330.01855 * 1 2 3 31 31 H 1.09003 * 109.47602 * 210.02443 * 1 2 3 32 32 H 1.08001 * 126.66707 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.64191 * 354.31206 * 10 9 7 34 34 H 1.09000 * 109.63735 * 114.93311 * 10 9 7 35 35 H 1.09000 * 109.48084 * 185.53062 * 11 10 9 36 36 H 1.09009 * 109.27006 * 65.79744 * 11 10 9 37 37 H 1.09000 * 109.48035 * 178.33158 * 15 14 12 38 38 H 1.09000 * 109.48979 * 58.29834 * 15 14 12 39 39 H 1.09000 * 109.60618 * 291.87193 * 16 15 14 40 40 H 1.08998 * 109.59906 * 171.39795 * 16 15 14 41 41 H 0.96994 * 120.00038 * 179.97438 * 21 20 18 42 42 H 1.09005 * 109.52486 * 245.52652 * 28 9 7 43 43 H 1.08999 * 109.52759 * 5.71795 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0006 5 7 3.5988 -0.6316 -0.0014 6 6 2.3836 -1.1205 0.0047 7 6 1.9991 -2.5532 0.0119 8 8 0.8308 -2.8680 0.1213 9 7 2.9458 -3.5055 -0.1031 10 6 4.3714 -3.1484 -0.1306 11 6 5.0010 -3.7446 -1.3877 12 6 4.7293 -5.2440 -1.4433 13 1 5.1733 -5.6392 -2.3569 14 8 5.3148 -5.9040 -0.3221 15 6 5.2070 -7.3301 -0.3685 16 6 3.7276 -7.7293 -0.3661 17 7 3.0352 -6.9811 -1.4275 18 6 2.2462 -7.6197 -2.3467 19 1 2.2055 -7.2619 -3.3648 20 6 1.4985 -8.7268 -1.9697 21 7 1.6124 -9.2144 -0.7525 22 14 0.3309 -9.5249 -3.1901 23 1 1.0962 -9.9945 -4.3728 24 1 -0.3435 -10.6809 -2.5466 25 1 -0.6877 -8.5340 -3.6210 26 6 3.2225 -5.5177 -1.4657 27 1 2.7616 -5.1010 -2.3613 28 6 2.5760 -4.9222 -0.2097 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3633 0.8902 0.5136 31 1 -0.3634 -0.8898 0.5142 32 1 2.0559 2.1075 0.0004 33 1 4.4771 -2.0637 -0.1488 34 1 4.8675 -3.5531 0.7515 35 1 6.0771 -3.5718 -1.3723 36 1 4.5709 -3.2656 -2.2674 37 1 5.7009 -7.7605 0.5027 38 1 5.6823 -7.7014 -1.2764 39 1 3.2850 -7.4872 0.6002 40 1 3.6373 -8.7991 -0.5544 41 1 1.0897 -9.9878 -0.4890 42 1 2.9295 -5.4583 0.6711 43 1 1.4920 -5.0114 -0.2808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074374085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:09 Heat of formation + Delta-G solvation = 10.424262 kcal Electronic energy + Delta-G solvation = -28607.384248 eV Core-core repulsion = 24656.920163 eV Total energy + Delta-G solvation = -3950.464085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.15281 -41.59623 -40.11135 -37.36660 -36.49286 -35.72342 -33.96503 -33.31468 -32.94619 -31.08938 -29.45105 -29.05424 -27.10823 -25.71604 -24.94978 -24.26791 -23.02078 -22.63769 -21.38409 -20.04515 -19.02693 -18.83801 -18.62531 -18.02165 -17.19152 -17.06184 -16.97770 -16.56550 -16.22471 -15.71388 -15.43638 -15.40640 -14.92609 -14.71509 -14.47600 -14.31331 -14.16205 -13.99852 -13.93355 -13.64842 -13.10640 -13.02188 -12.92824 -12.66527 -12.53925 -12.43300 -12.21849 -12.13027 -11.95078 -11.61093 -11.36496 -11.33210 -11.09133 -10.70930 -10.60278 -10.38358 -9.86452 -8.64695 -7.96300 -5.54659 0.03765 0.74201 1.41146 1.45028 1.50788 1.61927 1.96818 2.25975 2.41519 2.74727 2.86238 3.19696 3.39061 3.48292 3.67672 3.80103 4.02091 4.04956 4.09748 4.11008 4.19207 4.34552 4.42101 4.49597 4.54423 4.57511 4.77716 4.78941 4.81627 4.83296 4.86963 4.92423 4.95305 5.02090 5.13766 5.25715 5.34634 5.39785 5.54508 5.61622 6.19409 6.25846 6.35410 6.78565 7.03706 7.11103 7.64927 8.23837 9.06588 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.004110 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.389612 B = 6811.792511 C = 7978.710804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.175 4.175 3 C -0.023 4.023 4 O 0.131 5.869 5 N -0.339 5.339 6 C -0.047 4.047 7 C 0.582 3.418 8 O -0.564 6.564 9 N -0.591 5.591 10 C 0.084 3.916 11 C -0.112 4.112 12 C 0.086 3.914 13 H 0.052 0.948 14 O -0.385 6.385 15 C 0.049 3.951 16 C 0.143 3.857 17 N -0.602 5.602 18 C -0.275 4.275 19 H 0.065 0.935 20 C -0.034 4.034 21 N -0.927 5.927 22 Si 0.969 3.031 23 H -0.271 1.271 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.134 3.866 27 H 0.064 0.936 28 C 0.125 3.875 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.281 0.719 33 H 0.141 0.859 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.046 0.954 39 H -0.001 1.001 40 H 0.078 0.922 41 H 0.254 0.746 42 H 0.053 0.947 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.156 22.051 0.938 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.181 4.181 3 C -0.103 4.103 4 O 0.057 5.943 5 N -0.041 5.041 6 C -0.204 4.204 7 C 0.369 3.631 8 O -0.442 6.442 9 N -0.323 5.323 10 C -0.038 4.038 11 C -0.150 4.150 12 C 0.027 3.973 13 H 0.070 0.930 14 O -0.304 6.304 15 C -0.029 4.029 16 C 0.018 3.982 17 N -0.326 5.326 18 C -0.405 4.405 19 H 0.083 0.917 20 C -0.231 4.231 21 N -0.571 5.571 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.026 3.974 27 H 0.083 0.917 28 C 0.001 3.999 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.296 0.704 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.017 0.983 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.749 21.148 1.205 22.232 hybrid contribution -1.960 -1.420 -0.502 2.472 sum 4.788 19.728 0.703 20.313 Atomic orbital electron populations 1.20224 0.86167 1.03993 1.03375 1.21642 0.99848 0.90062 1.06519 1.26654 0.80167 1.02431 1.01079 1.84752 1.30799 1.14527 1.64242 1.73728 1.20468 0.92483 1.17436 1.23279 0.91080 0.95819 1.10201 1.17551 0.84905 0.83828 0.76816 1.90741 1.19240 1.82317 1.51907 1.48201 1.07961 1.06205 1.69905 1.22581 0.77909 1.04390 0.98916 1.21715 1.03342 0.91411 0.98515 1.22196 0.91967 0.93963 0.89210 0.92973 1.87739 1.78498 1.19360 1.44803 1.23247 0.97298 0.80615 1.01764 1.21404 0.89259 0.98076 0.89446 1.44374 1.54861 0.99992 1.33331 1.19362 1.19334 1.11100 0.90715 0.91718 1.26060 0.98799 1.00490 0.97709 1.70051 1.42473 1.25097 1.19500 0.85339 0.79192 0.77348 0.78529 1.19594 1.21556 1.20745 1.21718 0.95187 0.85103 0.95397 0.91738 1.21876 0.99404 0.78915 0.99738 0.90437 0.87364 0.92836 0.70372 0.84262 0.91152 0.87129 0.89675 0.87467 0.93581 0.98269 0.90362 0.93669 0.92895 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.07 71.24 0.72 -0.78 16 2 C -0.18 -3.56 6.34 -19.54 -0.12 -3.69 16 3 C -0.02 -0.25 12.24 67.14 0.82 0.57 16 4 O 0.13 2.13 11.18 71.91 0.80 2.93 16 5 N -0.34 -8.03 8.51 -49.51 -0.42 -8.45 16 6 C -0.05 -1.34 6.95 42.96 0.30 -1.04 16 7 C 0.58 21.88 7.72 86.93 0.67 22.55 16 8 O -0.56 -24.98 14.74 -3.69 -0.05 -25.04 16 9 N -0.59 -22.11 2.97 -822.62 -2.44 -24.55 16 10 C 0.08 2.51 6.15 86.19 0.53 3.04 16 11 C -0.11 -3.13 5.80 30.33 0.18 -2.96 16 12 C 0.09 3.13 2.71 30.48 0.08 3.22 16 13 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 14 O -0.38 -14.62 9.63 -148.98 -1.43 -16.05 16 15 C 0.05 1.90 6.98 72.06 0.50 2.40 16 16 C 0.14 7.07 4.88 86.33 0.42 7.49 16 17 N -0.60 -31.11 2.71 -672.48 -1.82 -32.93 16 18 C -0.28 -15.44 9.64 84.03 0.81 -14.63 16 19 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 20 C -0.03 -1.90 5.33 84.86 0.45 -1.45 16 21 N -0.93 -54.61 10.68 21.65 0.23 -54.38 16 22 Si 0.97 45.32 29.56 68.60 2.03 47.35 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 26 C 0.13 5.94 3.02 44.94 0.14 6.07 16 27 H 0.06 2.95 7.99 -2.38 -0.02 2.93 16 28 C 0.13 5.64 5.62 86.42 0.49 6.13 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.11 1.12 8.14 -2.38 -0.02 1.11 16 31 H 0.05 1.40 6.79 -2.39 -0.02 1.39 16 32 H 0.28 -0.53 8.06 -2.91 -0.02 -0.55 16 33 H 0.14 3.72 3.76 -45.60 -0.17 3.55 16 34 H 0.07 2.18 7.96 -2.39 -0.02 2.16 16 35 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.00 -0.04 7.18 -2.39 -0.02 -0.06 16 40 H 0.08 4.28 6.11 -2.39 -0.01 4.26 16 41 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.05 2.55 6.59 -2.38 -0.02 2.54 16 43 H 0.05 2.68 7.03 -2.39 -0.02 2.66 16 Total: -1.00 -73.95 339.34 3.75 -70.20 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.88 Total: 13.99 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: 5.98 Total: 26.93 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -4.46 Total: -120.31 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.69 Total: -38.15 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.95 3.75 -70.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074374085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.623 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds