Wall clock time and date at job start Fri Apr 10 2020 18:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47487 * 2 1 4 4 C 1.46503 * 119.99558 * 274.61811 * 3 2 1 5 5 C 1.50705 * 109.47231 * 262.37812 * 4 3 2 6 6 H 1.07997 * 119.99448 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99906 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00312 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99608 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47047 * 90.00230 * 9 7 5 11 11 H 1.48502 * 109.46958 * 209.99760 * 9 7 5 12 12 H 1.48495 * 109.47398 * 329.99923 * 9 7 5 13 13 C 1.34773 * 120.00443 * 94.61547 * 3 2 1 14 14 O 1.21363 * 119.99682 * 1.56239 * 13 3 2 15 15 C 1.49316 * 119.99962 * 181.28192 * 13 3 2 16 16 O 1.21397 * 120.00115 * 356.14499 * 15 13 3 17 17 N 1.34781 * 119.99806 * 176.14306 * 15 13 3 18 18 C 1.40101 * 119.99895 * 184.35496 * 17 15 13 19 19 C 1.35987 * 120.09731 * 117.36737 * 18 17 15 20 20 N 1.35887 * 120.59165 * 179.97438 * 19 18 17 21 21 C 1.46500 * 119.60178 * 179.97438 * 20 19 18 22 22 C 1.34626 * 120.79484 * 0.02562 * 20 19 18 23 23 O 1.22095 * 119.91637 * 179.97438 * 22 20 19 24 24 C 1.40535 * 120.17141 * 0.02562 * 22 20 19 25 25 C 1.36319 * 119.40263 * 359.69462 * 24 22 20 26 26 C 1.50691 * 120.38673 * 180.29610 * 25 24 22 27 27 H 1.09001 * 109.47500 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47397 * 300.00649 * 1 2 3 29 29 H 1.09005 * 109.47070 * 60.00305 * 1 2 3 30 30 H 1.08999 * 109.46906 * 239.99384 * 2 1 3 31 31 H 1.09005 * 109.47070 * 119.99695 * 2 1 3 32 32 H 1.09002 * 109.47460 * 22.37626 * 4 3 2 33 33 H 1.08999 * 109.47028 * 142.37567 * 4 3 2 34 34 H 0.96997 * 120.00170 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99878 * 4.35650 * 17 15 13 36 36 H 1.08003 * 119.70207 * 359.95930 * 19 18 17 37 37 H 1.09000 * 109.47340 * 90.00168 * 21 20 19 38 38 H 1.09000 * 109.46890 * 209.99867 * 21 20 19 39 39 H 1.08998 * 109.47175 * 330.00117 * 21 20 19 40 40 H 1.08001 * 120.29495 * 179.97438 * 24 22 20 41 41 H 1.09005 * 109.47386 * 270.25790 * 26 25 24 42 42 H 1.08998 * 109.47051 * 30.25280 * 26 25 24 43 43 H 1.08996 * 109.47528 * 150.25733 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1662 2.1057 -1.2647 5 6 3.6019 2.0375 -1.7178 6 1 4.3311 1.5071 -1.1234 7 6 3.9844 2.6523 -2.8912 8 7 3.0963 3.2977 -3.6153 9 14 5.7638 2.5671 -3.4532 10 1 5.9558 1.3689 -4.3092 11 1 6.0967 3.7885 -4.2295 12 1 6.6535 2.4762 -2.2678 13 6 2.3316 1.9852 1.1633 14 8 2.2361 1.3758 2.2085 15 6 2.8021 3.4023 1.1657 16 8 2.9695 3.9881 0.1157 17 7 3.0409 4.0311 2.3337 18 6 3.3941 5.3869 2.3399 19 6 2.5887 6.2986 2.9477 20 7 2.9218 7.6159 2.9602 21 6 2.0379 8.5796 3.6209 22 6 4.0536 8.0463 2.3720 23 8 4.3370 9.2337 2.3925 24 6 4.9094 7.1325 1.7335 25 6 4.5855 5.8084 1.7214 26 6 5.4903 4.8085 1.0489 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5248 1.6523 -2.0204 33 1 1.8792 3.1476 -1.1222 34 1 3.3653 3.7299 -4.4409 35 1 2.9683 3.5450 3.1699 36 1 1.6761 5.9727 3.4245 37 1 2.3282 8.6814 4.6665 38 1 2.1199 9.5469 3.1252 39 1 1.0080 8.2274 3.5624 40 1 5.8177 7.4756 1.2606 41 1 5.2020 4.7034 0.0029 42 1 6.5221 5.1547 1.1083 43 1 5.4013 3.8440 1.5489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446863580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:36 Heat of formation + Delta-G solvation = -70.392880 kcal Electronic energy + Delta-G solvation = -28084.110704 eV Core-core repulsion = 24130.142124 eV Total energy + Delta-G solvation = -3953.968579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.61134 -41.59412 -39.73292 -38.17587 -37.26372 -36.49994 -34.91235 -34.63834 -31.97990 -30.99795 -29.91076 -28.95544 -27.24653 -26.30926 -24.95762 -24.56784 -23.33007 -22.20478 -20.81543 -19.26816 -18.75231 -18.56313 -18.34232 -17.69606 -17.31984 -17.07244 -16.59427 -16.58418 -16.14107 -15.82320 -15.28417 -15.15005 -14.89633 -14.53363 -14.43249 -14.31558 -14.17524 -14.05580 -13.56943 -13.51329 -13.30275 -13.28873 -13.10384 -12.87856 -12.72690 -12.67328 -12.48095 -12.27406 -12.00076 -11.75476 -11.62565 -11.18593 -10.88274 -10.64857 -10.48010 -10.10628 -9.54551 -8.90559 -8.11046 -6.18705 -0.24927 0.45540 0.70602 1.35582 1.39467 1.42174 1.49974 1.79942 2.33033 2.43271 2.51714 2.72922 3.23744 3.45963 3.61106 3.66343 3.79115 4.03202 4.20166 4.33972 4.39388 4.44465 4.46010 4.55989 4.66530 4.73248 4.77895 4.81529 4.83668 4.98118 5.06398 5.07357 5.21172 5.28994 5.35920 5.41599 5.54691 5.69912 5.81540 5.92955 6.14655 6.20760 6.39885 6.85905 6.87419 6.94049 7.23398 7.47679 8.96963 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.004917 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.854039 B = 5693.101592 C = 7334.962909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.566 5.566 4 C 0.244 3.756 5 C -0.513 4.513 6 H 0.046 0.954 7 C 0.025 3.975 8 N -0.922 5.922 9 Si 0.942 3.058 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.506 3.494 14 O -0.560 6.560 15 C 0.494 3.506 16 O -0.474 6.474 17 N -0.635 5.635 18 C 0.018 3.982 19 C 0.157 3.843 20 N -0.489 5.489 21 C 0.054 3.946 22 C 0.507 3.493 23 O -0.598 6.598 24 C -0.268 4.268 25 C 0.038 3.962 26 C -0.121 4.121 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.017 0.983 33 H 0.051 0.949 34 H 0.261 0.739 35 H 0.427 0.573 36 H 0.216 0.784 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.838 1.349 15.687 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.296 5.296 4 C 0.124 3.876 5 C -0.552 4.552 6 H 0.064 0.936 7 C -0.174 4.174 8 N -0.562 5.562 9 Si 0.768 3.232 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.194 1.194 13 C 0.288 3.712 14 O -0.442 6.442 15 C 0.275 3.725 16 O -0.344 6.344 17 N -0.289 5.289 18 C -0.079 4.079 19 C 0.027 3.973 20 N -0.198 5.198 21 C -0.085 4.085 22 C 0.311 3.689 23 O -0.485 6.485 24 C -0.290 4.290 25 C 0.032 3.968 26 C -0.177 4.177 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.268 0.732 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.681 2.299 15.273 16.138 hybrid contribution 1.154 -0.172 -0.662 1.342 sum -3.527 2.127 14.610 15.180 Atomic orbital electron populations 1.22031 0.94096 1.03475 1.01565 1.21669 0.95650 0.81283 1.03391 1.48283 1.59485 1.14520 1.07323 1.19525 0.96124 0.92979 0.78998 1.21358 0.94669 1.32856 1.06276 0.93552 1.25444 1.00412 0.94798 0.96752 1.70010 1.35249 1.35769 1.15152 0.85805 0.81459 0.77471 0.78458 1.19839 1.21429 1.19397 1.19924 0.79420 0.87588 0.84222 1.90638 1.55857 1.66409 1.31286 1.20367 0.79678 0.87972 0.84474 1.90984 1.46000 1.66760 1.30699 1.42544 1.69525 1.07620 1.09236 1.16554 0.96338 0.84859 1.10171 1.22375 0.98128 0.81106 0.95665 1.45333 1.21008 1.08039 1.45415 1.22487 0.94568 0.92735 0.98757 1.17145 0.81941 0.89086 0.80706 1.90909 1.74903 1.18216 1.64471 1.21793 1.04542 0.92164 1.10482 1.20437 0.92351 0.94607 0.89369 1.20903 0.98759 0.97445 1.00603 0.88898 0.92958 0.93245 0.90163 0.89662 0.96523 0.93128 0.93009 0.73236 0.76699 0.88533 0.90311 0.85854 0.83500 0.91294 0.89465 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 10.24 71.98 0.74 -3.35 16 2 C 0.10 3.30 6.15 86.38 0.53 3.83 16 3 N -0.57 -22.55 2.48 -827.90 -2.05 -24.60 16 4 C 0.24 11.78 4.80 85.63 0.41 12.19 16 5 C -0.51 -27.05 8.08 25.60 0.21 -26.84 16 6 H 0.05 2.47 7.81 -2.91 -0.02 2.44 16 7 C 0.03 1.38 5.46 84.65 0.46 1.84 16 8 N -0.92 -53.27 13.29 21.45 0.28 -52.98 16 9 Si 0.94 43.53 29.54 68.60 2.03 45.56 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 C 0.51 19.07 7.66 87.23 0.67 19.74 16 14 O -0.56 -20.41 15.98 -3.29 -0.05 -20.46 16 15 C 0.49 17.87 6.64 87.23 0.58 18.45 16 16 O -0.47 -21.12 10.01 -3.39 -0.03 -21.15 16 17 N -0.63 -16.76 4.68 -305.35 -1.43 -18.19 16 18 C 0.02 0.46 5.62 37.90 0.21 0.67 16 19 C 0.16 2.90 10.20 83.54 0.85 3.76 16 20 N -0.49 -10.54 2.99 -673.79 -2.01 -12.56 16 21 C 0.05 0.72 10.36 127.77 1.32 2.04 16 22 C 0.51 15.60 7.40 84.83 0.63 16.23 16 23 O -0.60 -22.19 16.63 -5.63 -0.09 -22.28 16 24 C -0.27 -8.30 9.64 22.38 0.22 -8.09 16 25 C 0.04 1.14 5.53 -19.71 -0.11 1.03 16 26 C -0.12 -3.91 8.50 71.23 0.61 -3.30 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 31 H 0.09 2.63 7.27 -2.38 -0.02 2.61 16 32 H 0.02 0.85 8.02 -2.39 -0.02 0.83 16 33 H 0.05 2.70 5.58 -2.39 -0.01 2.69 16 34 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.43 8.94 8.30 -92.71 -0.77 8.17 16 36 H 0.22 1.82 8.04 -2.91 -0.02 1.80 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.37 7.38 -2.39 -0.02 1.36 16 39 H 0.12 0.71 8.01 -2.39 -0.02 0.70 16 40 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.07 2.79 7.13 -2.38 -0.02 2.77 16 42 H 0.09 2.39 8.09 -2.39 -0.02 2.37 16 43 H 0.07 2.16 7.15 -2.39 -0.02 2.14 16 Total: -1.00 -74.06 363.02 4.23 -69.82 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.27 Total: 18.66 kcal Atomic # 6 Polarization: 30.87 SS G_CDS: 7.33 Total: 38.20 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -5.21 Total: -108.34 kcal Atomic # 8 Polarization: -63.72 SS G_CDS: -0.18 Total: -63.90 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -74.06 4.23 -69.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446863580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.569 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds