Wall clock time and date at job start Fri Apr 10 2020 18:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46988 * 234.91188 * 3 2 1 5 5 C 1.36934 * 120.00209 * 86.08367 * 4 3 2 6 6 H 1.08006 * 119.99894 * 209.22001 * 5 4 3 7 7 C 1.38809 * 120.00142 * 29.22222 * 5 4 3 8 8 N 1.31625 * 119.99873 * 39.94884 * 7 5 4 9 9 Si 1.86795 * 119.99965 * 219.95123 * 7 5 4 10 10 H 1.48503 * 109.47144 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47360 * 299.99878 * 9 7 5 12 12 H 1.48500 * 109.47486 * 59.99833 * 9 7 5 13 13 C 1.46508 * 119.99846 * 266.07951 * 4 3 2 14 14 C 1.50696 * 109.47285 * 270.00181 * 13 4 3 15 15 C 1.35050 * 119.46440 * 116.55441 * 14 13 4 16 16 C 1.41458 * 121.12969 * 359.95562 * 15 14 13 17 17 O 1.21678 * 120.00102 * 258.11561 * 16 15 14 18 18 O 1.34942 * 119.99738 * 78.11548 * 16 15 14 19 19 C 1.42901 * 116.99702 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46931 * 180.02562 * 19 18 16 21 21 C 1.51529 * 117.73774 * 179.97438 * 15 14 13 22 22 H 1.09009 * 107.95041 * 238.15492 * 21 15 14 23 23 C 1.53002 * 107.95472 * 121.88421 * 21 15 14 24 24 N 1.47262 * 116.94037 * 359.97438 * 21 15 14 25 25 C 1.34776 * 118.42049 * 0.02562 * 24 21 15 26 26 O 1.21547 * 118.92177 * 179.97438 * 25 24 21 27 27 N 1.33898 * 122.14641 * 359.72688 * 25 24 21 28 28 H 4.40634 * 5.51437 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.46800 * 114.91384 * 3 2 1 30 30 H 1.08999 * 109.47108 * 354.91005 * 3 2 1 31 31 H 0.96997 * 120.00060 * 4.82994 * 8 7 5 32 32 H 1.08996 * 109.46811 * 30.00295 * 13 4 3 33 33 H 1.09005 * 109.46868 * 150.00216 * 13 4 3 34 34 H 1.09006 * 109.46885 * 299.99736 * 19 18 16 35 35 H 1.08994 * 109.47449 * 60.00251 * 19 18 16 36 36 H 1.09000 * 109.47020 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.46803 * 299.99963 * 20 19 18 38 38 H 1.08994 * 109.47217 * 59.99658 * 20 19 18 39 39 H 1.08996 * 109.46947 * 59.99553 * 23 21 15 40 40 H 1.09000 * 109.46608 * 179.97438 * 23 21 15 41 41 H 1.08999 * 109.46723 * 299.99703 * 23 21 15 42 42 H 0.97001 * 120.78782 * 179.97438 * 24 21 15 43 43 H 0.97003 * 118.15259 * 180.28440 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7948 1.1302 5 6 3.2861 0.2134 2.3606 6 1 3.1781 0.8079 3.2558 7 6 3.5790 -1.1399 2.4573 8 7 4.4278 -1.6913 1.6158 9 14 2.7688 -2.1786 3.7816 10 1 3.2454 -3.5808 3.6717 11 1 3.1216 -1.6388 5.1192 12 1 1.2946 -2.1424 3.6064 13 6 3.4593 2.2112 0.9440 14 6 4.9073 2.3463 0.5493 15 6 5.2211 2.8568 -0.6609 16 6 4.2136 3.2663 -1.5655 17 8 3.9113 2.5524 -2.5033 18 8 3.5878 4.4486 -1.3883 19 6 2.5811 4.7988 -2.3402 20 6 1.9892 6.1625 -1.9781 21 6 6.6892 2.9757 -1.0171 22 1 6.8980 4.0230 -1.2361 23 6 6.9304 2.1733 -2.2973 24 7 7.6597 2.5221 -0.0067 25 6 7.1913 2.0341 1.1590 26 8 7.9844 1.6566 1.9993 27 7 5.8811 1.9561 1.4236 28 1 -1.0501 -0.0003 -0.0001 29 1 3.0091 0.4337 -0.9320 30 1 3.0098 -1.0228 0.0912 31 1 4.9014 -1.1399 0.9736 32 1 2.8283 2.6287 0.1594 33 1 3.2848 2.7495 1.8756 34 1 3.0233 4.8476 -3.3353 35 1 1.7931 4.0459 -2.3292 36 1 1.2210 6.4294 -2.7039 37 1 1.5472 6.1140 -0.9830 38 1 2.7774 6.9152 -1.9893 39 1 6.3139 2.5767 -3.1005 40 1 7.9817 2.2426 -2.5767 41 1 6.6674 1.1294 -2.1267 42 1 8.6134 2.5726 -0.1765 43 1 5.6082 1.5989 2.2832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491508221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:27 Heat of formation + Delta-G solvation = -18.744488 kcal Electronic energy + Delta-G solvation = -28643.190353 eV Core-core repulsion = 24691.461416 eV Total energy + Delta-G solvation = -3951.728937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.15483 -40.06804 -37.39477 -36.61263 -36.01750 -34.83381 -32.39116 -32.30872 -31.54262 -30.98616 -29.24720 -27.23002 -25.93035 -24.14336 -22.97478 -22.72598 -21.71780 -21.22229 -19.14993 -18.24044 -17.91012 -17.29971 -17.08728 -16.40600 -16.27559 -15.78268 -15.41586 -15.19380 -14.58753 -14.44900 -14.05206 -13.96459 -13.72617 -13.55897 -13.26217 -12.98406 -12.80548 -12.55931 -12.15469 -12.00667 -11.89398 -11.67870 -11.58923 -11.50943 -11.10460 -10.94231 -10.81671 -10.40095 -10.37602 -10.17505 -10.10958 -10.05222 -9.59232 -9.27758 -9.20133 -8.56567 -7.78700 -7.39935 -6.50711 -3.59306 1.67987 2.26800 2.78705 3.21571 3.35503 3.43735 3.46703 3.58668 3.61929 3.66065 3.90452 4.40942 4.67261 4.89472 4.90753 4.93146 5.07147 5.16795 5.23593 5.25869 5.27522 5.33961 5.47971 5.62597 5.71122 5.72066 5.83984 5.88900 5.98284 6.07442 6.19891 6.27416 6.33709 6.37270 6.66014 6.74080 6.78250 7.08863 7.21959 7.70935 7.83929 7.97889 8.20857 8.43012 8.61587 8.65195 9.43007 9.83640 10.73661 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.006128 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.519929 B = 4568.346436 C = 6394.462677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.152 4.152 3 C 0.226 3.774 4 N -0.567 5.567 5 C -0.394 4.394 6 H 0.064 0.936 7 C 0.006 3.994 8 N -0.861 5.861 9 Si 1.050 2.950 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.162 3.838 14 C 0.224 3.776 15 C -0.322 4.322 16 C 0.559 3.441 17 O -0.498 6.498 18 O -0.351 6.351 19 C 0.058 3.942 20 C -0.151 4.151 21 C 0.213 3.787 22 H 0.069 0.931 23 C -0.165 4.165 24 N -0.720 5.720 25 C 0.706 3.294 26 O -0.577 6.577 27 N -0.627 5.627 28 H 0.205 0.795 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.274 0.726 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.425 0.575 43 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 13.113 -7.671 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.154 4.154 3 C 0.101 3.899 4 N -0.285 5.285 5 C -0.521 4.521 6 H 0.082 0.918 7 C -0.203 4.203 8 N -0.494 5.494 9 Si 0.878 3.122 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.034 3.966 14 C 0.113 3.887 15 C -0.333 4.333 16 C 0.403 3.597 17 O -0.386 6.386 18 O -0.269 6.269 19 C -0.017 4.017 20 C -0.208 4.208 21 C 0.107 3.893 22 H 0.087 0.913 23 C -0.224 4.224 24 N -0.381 5.381 25 C 0.406 3.594 26 O -0.454 6.454 27 N -0.269 5.269 28 H 0.222 0.778 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.265 0.735 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -0.674 11.161 -6.946 13.164 hybrid contribution 0.028 1.335 -0.617 1.471 sum -0.645 12.497 -7.564 14.622 Atomic orbital electron populations 1.24610 0.95637 1.04271 1.03685 1.24806 0.95808 0.97458 0.97341 1.18191 0.82320 0.99512 0.89877 1.43982 1.70982 1.05292 1.08273 1.19780 1.53049 0.95805 0.83501 0.91819 1.25904 0.95314 0.96462 1.02630 1.70860 1.17185 1.41118 1.20277 0.83761 0.76623 0.76401 0.75391 1.20960 1.21369 1.21583 1.20593 0.85907 0.89057 1.01013 1.21571 0.93777 0.85591 0.87724 1.18430 0.93307 1.23431 0.98100 1.18690 0.79498 0.78512 0.83031 1.90886 1.63054 1.53116 1.31503 1.86362 1.49517 1.38046 1.52935 1.22605 0.89859 0.97569 0.91667 1.21794 1.00985 0.95036 1.02961 1.19202 0.84836 0.97777 0.87456 0.91303 1.22339 1.01146 1.01923 0.96943 1.45293 1.09627 1.67952 1.15237 1.15806 0.82550 0.78179 0.82851 1.90999 1.53902 1.53997 1.46517 1.42176 1.03263 1.60908 1.20517 0.77849 0.91670 0.88461 0.91567 0.91400 0.90346 0.91751 0.91502 0.90586 0.91417 0.91649 0.91307 0.92558 0.91629 0.73455 0.72191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.04 19.25 29.55 0.57 -4.47 16 2 C -0.15 -3.30 13.65 -37.12 -0.51 -3.80 16 3 C 0.23 5.10 5.61 -6.83 -0.04 5.06 16 4 N -0.57 -12.59 2.30 -177.95 -0.41 -13.00 16 5 C -0.39 -9.65 8.42 -15.06 -0.13 -9.78 16 6 H 0.06 1.57 8.06 -52.48 -0.42 1.15 16 7 C 0.01 0.15 4.54 -17.43 -0.08 0.07 16 8 N -0.86 -23.50 12.21 55.49 0.68 -22.83 16 9 Si 1.05 23.77 30.05 -169.99 -5.11 18.66 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 13 C 0.16 3.04 5.74 -5.19 -0.03 3.01 16 14 C 0.22 4.01 6.42 -81.62 -0.52 3.48 16 15 C -0.32 -5.29 5.14 -104.12 -0.53 -5.82 16 16 C 0.56 9.07 4.94 31.96 0.16 9.23 16 17 O -0.50 -9.05 15.88 -19.40 -0.31 -9.36 16 18 O -0.35 -5.00 9.84 -41.16 -0.40 -5.41 16 19 C 0.06 0.66 6.10 37.16 0.23 0.89 16 20 C -0.15 -1.28 10.28 37.16 0.38 -0.90 16 21 C 0.21 3.00 3.73 -68.26 -0.25 2.75 16 22 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 23 C -0.16 -2.21 9.00 37.16 0.33 -1.87 16 24 N -0.72 -10.62 5.36 -59.15 -0.32 -10.93 16 25 C 0.71 13.20 8.63 -87.70 -0.76 12.44 16 26 O -0.58 -12.58 17.94 5.32 0.10 -12.48 16 27 N -0.63 -11.80 5.14 -12.87 -0.07 -11.86 16 28 H 0.20 3.00 7.80 -54.09 -0.42 2.58 16 29 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 30 H 0.10 2.45 5.60 -51.93 -0.29 2.16 16 31 H 0.27 7.59 7.97 -40.82 -0.33 7.26 16 32 H 0.07 1.24 6.11 -51.93 -0.32 0.92 16 33 H 0.08 1.40 8.04 -51.93 -0.42 0.99 16 34 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 35 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.93 7.09 -51.93 -0.37 0.56 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.42 5.16 8.93 -40.82 -0.36 4.80 16 43 H 0.44 8.83 7.78 -40.82 -0.32 8.51 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -30.05 372.01 -7.26 -37.30 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -5.84 Total: 14.02 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -1.18 Total: 10.28 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.11 Total: -58.62 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.62 Total: -27.25 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.11 Total: 18.66 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.05 -7.26 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491508221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.558 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds