Wall clock time and date at job start Fri Apr 10 2020 18:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46988 * 234.91188 * 3 2 1 5 5 C 1.36934 * 120.00209 * 86.08367 * 4 3 2 6 6 H 1.08006 * 119.99894 * 209.22001 * 5 4 3 7 7 C 1.38809 * 120.00142 * 29.22222 * 5 4 3 8 8 N 1.31625 * 119.99873 * 39.94884 * 7 5 4 9 9 Si 1.86795 * 119.99965 * 219.95123 * 7 5 4 10 10 H 1.48503 * 109.47144 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47360 * 299.99878 * 9 7 5 12 12 H 1.48500 * 109.47486 * 59.99833 * 9 7 5 13 13 C 1.46508 * 119.99846 * 266.07951 * 4 3 2 14 14 C 1.50696 * 109.47285 * 270.00181 * 13 4 3 15 15 C 1.35050 * 119.46440 * 116.55441 * 14 13 4 16 16 C 1.41458 * 121.12969 * 359.95562 * 15 14 13 17 17 O 1.21678 * 120.00102 * 258.11561 * 16 15 14 18 18 O 1.34942 * 119.99738 * 78.11548 * 16 15 14 19 19 C 1.42901 * 116.99702 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46931 * 180.02562 * 19 18 16 21 21 C 1.51529 * 117.73774 * 179.97438 * 15 14 13 22 22 H 1.09009 * 107.95041 * 238.15492 * 21 15 14 23 23 C 1.53002 * 107.95472 * 121.88421 * 21 15 14 24 24 N 1.47262 * 116.94037 * 359.97438 * 21 15 14 25 25 C 1.34776 * 118.42049 * 0.02562 * 24 21 15 26 26 O 1.21547 * 118.92177 * 179.97438 * 25 24 21 27 27 N 1.33898 * 122.14641 * 359.72688 * 25 24 21 28 28 H 4.40634 * 5.51437 * 180.02562 * 4 1 2 29 29 H 1.08999 * 109.46800 * 114.91384 * 3 2 1 30 30 H 1.08999 * 109.47108 * 354.91005 * 3 2 1 31 31 H 0.96997 * 120.00060 * 4.82994 * 8 7 5 32 32 H 1.08996 * 109.46811 * 30.00295 * 13 4 3 33 33 H 1.09005 * 109.46868 * 150.00216 * 13 4 3 34 34 H 1.09006 * 109.46885 * 299.99736 * 19 18 16 35 35 H 1.08994 * 109.47449 * 60.00251 * 19 18 16 36 36 H 1.09000 * 109.47020 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.46803 * 299.99963 * 20 19 18 38 38 H 1.08994 * 109.47217 * 59.99658 * 20 19 18 39 39 H 1.08996 * 109.46947 * 59.99553 * 23 21 15 40 40 H 1.09000 * 109.46608 * 179.97438 * 23 21 15 41 41 H 1.08999 * 109.46723 * 299.99703 * 23 21 15 42 42 H 0.97001 * 120.78782 * 179.97438 * 24 21 15 43 43 H 0.97003 * 118.15259 * 180.28440 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7948 1.1302 5 6 3.2861 0.2134 2.3606 6 1 3.1781 0.8079 3.2558 7 6 3.5790 -1.1399 2.4573 8 7 4.4278 -1.6913 1.6158 9 14 2.7688 -2.1786 3.7816 10 1 3.2454 -3.5808 3.6717 11 1 3.1216 -1.6388 5.1192 12 1 1.2946 -2.1424 3.6064 13 6 3.4593 2.2112 0.9440 14 6 4.9073 2.3463 0.5493 15 6 5.2211 2.8568 -0.6609 16 6 4.2136 3.2663 -1.5655 17 8 3.9113 2.5524 -2.5033 18 8 3.5878 4.4486 -1.3883 19 6 2.5811 4.7988 -2.3402 20 6 1.9892 6.1625 -1.9781 21 6 6.6892 2.9757 -1.0171 22 1 6.8980 4.0230 -1.2361 23 6 6.9304 2.1733 -2.2973 24 7 7.6597 2.5221 -0.0067 25 6 7.1913 2.0341 1.1590 26 8 7.9844 1.6566 1.9993 27 7 5.8811 1.9561 1.4236 28 1 -1.0501 -0.0003 -0.0001 29 1 3.0091 0.4337 -0.9320 30 1 3.0098 -1.0228 0.0912 31 1 4.9014 -1.1399 0.9736 32 1 2.8283 2.6287 0.1594 33 1 3.2848 2.7495 1.8756 34 1 3.0233 4.8476 -3.3353 35 1 1.7931 4.0459 -2.3292 36 1 1.2210 6.4294 -2.7039 37 1 1.5472 6.1140 -0.9830 38 1 2.7774 6.9152 -1.9893 39 1 6.3139 2.5767 -3.1005 40 1 7.9817 2.2426 -2.5767 41 1 6.6674 1.1294 -2.1267 42 1 8.6134 2.5726 -0.1765 43 1 5.6082 1.5989 2.2832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491508221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:26 Heat of formation + Delta-G solvation = -37.356447 kcal Electronic energy + Delta-G solvation = -28643.997428 eV Core-core repulsion = 24691.461416 eV Total energy + Delta-G solvation = -3952.536012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.53676 -41.38989 -38.93146 -38.01465 -37.44335 -36.25719 -34.10537 -33.76311 -32.87380 -32.19745 -30.58826 -28.77951 -27.66669 -25.43480 -24.39511 -23.90801 -23.03872 -22.71951 -20.43744 -19.87795 -19.43559 -18.82440 -18.48738 -17.79197 -17.44176 -17.16823 -16.84586 -16.52911 -16.26851 -16.13429 -15.57850 -15.42953 -15.25353 -14.87268 -14.42630 -14.34757 -13.89915 -13.72486 -13.61329 -13.38429 -13.34833 -13.01731 -12.85762 -12.62548 -12.54072 -12.45541 -12.35614 -11.97254 -11.90862 -11.70671 -11.58701 -11.42443 -11.23735 -10.95201 -10.55696 -10.44810 -9.25891 -9.13410 -8.46642 -5.52466 0.27529 0.95531 1.45328 1.55889 1.62687 1.81206 1.87161 1.92368 2.03868 2.13478 2.55742 2.59393 3.02009 3.31870 3.53173 3.74812 3.85677 3.97072 4.05637 4.11729 4.13276 4.17184 4.33440 4.40061 4.48497 4.52923 4.63936 4.78160 4.85358 4.87982 4.96054 4.97948 5.08517 5.18279 5.22617 5.23336 5.46500 5.69351 5.83601 5.87693 6.21793 6.42932 6.70781 6.76775 6.86137 7.19376 7.55995 7.99176 8.75899 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.006128 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.519929 B = 4568.346436 C = 6394.462677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.215 4.215 3 C 0.237 3.763 4 N -0.577 5.577 5 C -0.383 4.383 6 H 0.060 0.940 7 C -0.038 4.038 8 N -0.892 5.892 9 Si 1.089 2.911 10 H -0.296 1.296 11 H -0.271 1.271 12 H -0.286 1.286 13 C 0.167 3.833 14 C 0.204 3.796 15 C -0.304 4.304 16 C 0.561 3.439 17 O -0.520 6.520 18 O -0.349 6.349 19 C 0.048 3.952 20 C -0.144 4.144 21 C 0.206 3.794 22 H 0.106 0.894 23 C -0.158 4.158 24 N -0.702 5.702 25 C 0.701 3.299 26 O -0.614 6.614 27 N -0.632 5.632 28 H 0.249 0.751 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.259 0.741 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.035 0.965 42 H 0.439 0.561 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.954 15.298 -8.596 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.217 4.217 3 C 0.112 3.888 4 N -0.296 5.296 5 C -0.510 4.510 6 H 0.078 0.922 7 C -0.241 4.241 8 N -0.528 5.528 9 Si 0.915 3.085 10 H -0.222 1.222 11 H -0.197 1.197 12 H -0.212 1.212 13 C 0.041 3.959 14 C 0.096 3.904 15 C -0.314 4.314 16 C 0.406 3.594 17 O -0.409 6.409 18 O -0.265 6.265 19 C -0.026 4.026 20 C -0.201 4.201 21 C 0.101 3.899 22 H 0.123 0.877 23 C -0.216 4.216 24 N -0.363 5.363 25 C 0.402 3.598 26 O -0.495 6.495 27 N -0.272 5.272 28 H 0.266 0.734 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.054 0.946 42 H 0.282 0.718 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.766 13.415 -7.909 15.672 hybrid contribution 0.253 0.840 -0.479 0.999 sum -1.513 14.254 -8.388 16.608 Atomic orbital electron populations 1.25579 0.96471 1.01086 1.00655 1.24852 0.96341 1.00360 1.00189 1.17810 0.83488 0.97785 0.89717 1.43974 1.71876 1.06122 1.07640 1.19819 1.51179 0.95755 0.84294 0.92211 1.26782 0.95592 0.97942 1.03791 1.70953 1.19199 1.40855 1.21808 0.83210 0.75937 0.74765 0.74585 1.22206 1.19656 1.21220 1.20534 0.86604 0.87175 1.01628 1.21330 0.93141 0.87570 0.88349 1.18843 0.95052 1.20809 0.96718 1.18625 0.79357 0.78939 0.82501 1.90890 1.63745 1.53914 1.32367 1.86353 1.49845 1.36662 1.53664 1.22944 0.88988 0.98955 0.91693 1.21817 1.01650 0.93144 1.03477 1.19470 0.83253 0.99941 0.87222 0.87683 1.22268 1.03287 0.99720 0.96337 1.45208 1.10572 1.66633 1.13888 1.15965 0.82133 0.78202 0.83541 1.90966 1.54652 1.55830 1.48010 1.42075 1.03596 1.61256 1.20317 0.73434 0.92152 0.91651 0.93187 0.90817 0.89559 0.90869 0.92418 0.88201 0.91731 0.90807 0.91097 0.89337 0.94603 0.71753 0.73370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.88 19.25 74.32 1.43 -6.45 16 2 C -0.22 -9.29 13.65 31.12 0.42 -8.86 16 3 C 0.24 11.05 5.61 84.57 0.47 11.52 16 4 N -0.58 -26.17 2.30 -716.91 -1.65 -27.82 16 5 C -0.38 -19.11 8.42 84.03 0.71 -18.40 16 6 H 0.06 2.99 8.06 -2.91 -0.02 2.96 16 7 C -0.04 -1.99 4.54 84.86 0.39 -1.60 16 8 N -0.89 -50.81 12.21 21.65 0.26 -50.55 16 9 Si 1.09 48.88 30.05 68.60 2.06 50.94 16 10 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 12 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.17 6.31 5.74 85.63 0.49 6.80 16 14 C 0.20 7.34 6.42 41.09 0.26 7.61 16 15 C -0.30 -9.67 5.14 -19.54 -0.10 -9.77 16 16 C 0.56 17.55 4.94 68.61 0.34 17.88 16 17 O -0.52 -18.54 15.88 19.25 0.31 -18.24 16 18 O -0.35 -9.28 9.84 -58.58 -0.58 -9.86 16 19 C 0.05 1.01 6.10 71.98 0.44 1.45 16 20 C -0.14 -2.04 10.28 71.98 0.74 -1.30 16 21 C 0.21 5.39 3.73 44.36 0.17 5.55 16 22 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 23 C -0.16 -3.92 9.00 71.98 0.65 -3.27 16 24 N -0.70 -19.75 5.36 -459.33 -2.46 -22.21 16 25 C 0.70 26.37 8.63 179.33 1.55 27.92 16 26 O -0.61 -27.28 17.94 -3.86 -0.07 -27.35 16 27 N -0.63 -24.26 5.14 -313.39 -1.61 -25.87 16 28 H 0.25 6.18 7.80 -4.41 -0.03 6.14 16 29 H 0.06 2.76 8.04 -2.39 -0.02 2.74 16 30 H 0.07 3.48 5.60 -2.39 -0.01 3.46 16 31 H 0.26 15.14 7.97 -92.71 -0.74 14.40 16 32 H 0.07 2.66 6.11 -2.39 -0.01 2.65 16 33 H 0.09 3.08 8.04 -2.38 -0.02 3.06 16 34 H 0.07 1.42 8.13 -2.38 -0.02 1.40 16 35 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.76 7.09 -2.39 -0.02 1.75 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.44 9.83 8.93 -92.71 -0.83 9.00 16 43 H 0.43 17.94 7.78 -92.71 -0.72 17.22 16 Total: -1.00 -67.32 372.01 3.76 -63.56 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -0.46 Total: 38.32 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 7.96 Total: 29.07 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -5.45 Total: -126.44 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -0.34 Total: -55.45 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.06 Total: 50.94 kcal Total: -67.32 3.76 -63.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491508221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.201 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds