Wall clock time and date at job start Fri Apr 10 2020 18:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47208 * 2 1 4 4 C 1.46505 * 120.00296 * 89.99482 * 3 2 1 5 5 C 1.50704 * 109.46334 * 90.00168 * 4 3 2 6 6 H 1.07992 * 120.00247 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99311 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99643 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47350 * 90.00065 * 9 7 5 11 11 H 1.48506 * 109.46764 * 209.99606 * 9 7 5 12 12 H 1.48500 * 109.47388 * 329.99370 * 9 7 5 13 13 C 1.34785 * 120.00039 * 269.72901 * 3 2 1 14 14 O 1.21762 * 119.99703 * 180.02562 * 13 3 2 15 15 C 1.41626 * 119.99780 * 359.97438 * 13 3 2 16 16 C 1.35309 * 120.00033 * 179.97438 * 15 13 3 17 17 C 1.46559 * 119.99883 * 174.91174 * 16 15 13 18 18 C 1.38353 * 120.97313 * 185.57935 * 17 16 15 19 19 N 1.35949 * 119.27185 * 180.02562 * 18 17 16 20 20 C 1.46501 * 119.24659 * 179.97438 * 19 18 17 21 21 C 1.34225 * 121.50710 * 359.97438 * 19 18 17 22 22 O 1.21559 * 118.90805 * 180.02562 * 21 19 18 23 23 N 1.34390 * 122.17800 * 0.02562 * 21 19 18 24 24 C 1.46495 * 119.75897 * 180.02562 * 23 21 19 25 25 C 1.34974 * 120.47623 * 359.70177 * 23 21 19 26 26 O 1.21668 * 120.73830 * 180.30950 * 25 23 21 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47501 * 299.99926 * 1 2 3 29 29 H 1.09006 * 109.47293 * 60.00080 * 1 2 3 30 30 H 1.08999 * 109.47501 * 240.00074 * 2 1 3 31 31 H 1.08993 * 109.47022 * 120.00032 * 2 1 3 32 32 H 1.08992 * 109.47430 * 210.00145 * 4 3 2 33 33 H 1.08997 * 109.47053 * 330.01034 * 4 3 2 34 34 H 0.97001 * 120.00180 * 180.02562 * 8 7 5 35 35 H 1.08000 * 120.00220 * 0.02562 * 15 13 3 36 36 H 1.07997 * 119.99692 * 354.92003 * 16 15 13 37 37 H 1.08001 * 120.36011 * 359.97438 * 18 17 16 38 38 H 1.09000 * 109.47179 * 359.97438 * 20 19 18 39 39 H 1.08999 * 109.47227 * 119.99767 * 20 19 18 40 40 H 1.08998 * 109.47087 * 240.00234 * 20 19 18 41 41 H 1.08996 * 109.47435 * 89.99944 * 24 23 21 42 42 H 1.08999 * 109.46853 * 209.99846 * 24 23 21 43 43 H 1.08998 * 109.47125 * 329.99339 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6857 1.8350 1.7037 6 1 4.3427 1.2309 1.0958 7 6 4.1490 2.3897 2.8780 8 7 5.3912 2.1835 3.2573 9 14 3.0122 3.4341 3.9298 10 1 2.3075 2.5673 4.9080 11 1 3.8093 4.4546 4.6570 12 1 2.0164 4.1110 3.0607 13 6 2.2481 2.0147 -1.1673 14 8 2.6545 3.1626 -1.1672 15 6 2.0181 1.3449 -2.3937 16 6 2.2483 1.9811 -3.5656 17 6 2.1178 1.2546 -4.8317 18 6 2.4583 1.8506 -6.0330 19 7 2.3231 1.1449 -7.1870 20 6 2.6833 1.7767 -8.4588 21 6 1.8670 -0.1175 -7.1879 22 8 1.7653 -0.7048 -8.2474 23 7 1.5193 -0.7537 -6.0564 24 6 1.0282 -2.1325 -6.1189 25 6 1.6253 -0.1337 -4.8622 26 8 1.3171 -0.7070 -3.8343 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8899 32 1 2.0954 3.1410 1.1384 33 1 1.5817 1.6877 2.0284 34 1 5.7171 2.5734 4.0836 35 1 1.6580 0.3267 -2.3937 36 1 2.5284 3.0241 -3.5678 37 1 2.8267 2.8656 -6.0536 38 1 3.0308 2.7931 -8.2739 39 1 3.4764 1.2027 -8.9379 40 1 1.8102 1.8046 -9.1107 41 1 1.8684 -2.8216 -6.0339 42 1 0.3307 -2.3072 -5.2997 43 1 0.5201 -2.2945 -7.0695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492221242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:42 Heat of formation + Delta-G solvation = -30.641402 kcal Electronic energy + Delta-G solvation = -27102.223245 eV Core-core repulsion = 23149.978419 eV Total energy + Delta-G solvation = -3952.244826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.57517 -39.61932 -39.04706 -37.77042 -35.67152 -35.34904 -34.04333 -32.63073 -30.77717 -30.10421 -28.75918 -27.74606 -27.15500 -24.67709 -23.94392 -22.81651 -22.70174 -20.84626 -19.70962 -17.93323 -17.61827 -17.55425 -17.51961 -16.82208 -16.35678 -16.00219 -15.49940 -15.27472 -15.19784 -14.40721 -14.10714 -13.97027 -13.78138 -13.68844 -13.31120 -13.27212 -13.16063 -12.86273 -12.67438 -12.43583 -12.25889 -12.05379 -11.96084 -11.65691 -11.39951 -11.29907 -10.85709 -10.62844 -10.42433 -10.27415 -10.09672 -10.04223 -9.97975 -9.45498 -8.89082 -8.52352 -8.06143 -7.52495 -6.01717 -3.99450 0.30003 1.44642 1.48228 2.03347 2.52436 3.15198 3.32274 3.39881 3.45234 3.80385 3.97433 4.16399 4.21236 4.44303 4.46305 4.73233 4.76383 4.92703 4.99297 5.01878 5.04499 5.09033 5.30563 5.36456 5.46866 5.56115 5.65595 5.74267 5.77512 5.89690 5.94009 6.22867 6.30465 6.48852 6.55468 6.68626 6.82722 6.84868 7.10527 7.16689 7.50132 7.55307 7.70021 8.40716 8.55858 9.01983 9.12324 9.59237 11.11899 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002898 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.756766 B = 9658.249223 C =10314.791886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.586 5.586 4 C 0.215 3.785 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.537 3.463 14 O -0.553 6.553 15 C -0.198 4.198 16 C -0.033 4.033 17 C -0.220 4.220 18 C 0.171 3.829 19 N -0.529 5.529 20 C 0.082 3.918 21 C 0.690 3.310 22 O -0.542 6.542 23 N -0.554 5.554 24 C 0.079 3.921 25 C 0.551 3.449 26 O -0.489 6.489 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.187 0.813 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.715 -4.142 -24.259 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.316 5.316 4 C 0.094 3.906 5 C -0.563 4.563 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.188 1.188 13 C 0.327 3.673 14 O -0.434 6.434 15 C -0.218 4.218 16 C -0.055 4.055 17 C -0.229 4.229 18 C 0.047 3.953 19 N -0.246 5.246 20 C -0.059 4.059 21 C 0.394 3.606 22 O -0.416 6.416 23 N -0.298 5.298 24 C -0.062 4.062 25 C 0.345 3.655 26 O -0.362 6.362 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.179 0.821 36 H 0.159 0.841 37 H 0.204 0.796 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.625 -4.245 -24.229 26.414 hybrid contribution -0.346 0.471 0.740 0.943 sum -9.971 -3.775 -23.490 25.796 Atomic orbital electron populations 1.22194 0.96762 1.01477 1.02012 1.21491 0.93479 0.83768 1.03210 1.47872 1.63142 1.13446 1.07144 1.19638 0.97022 0.93668 0.80260 1.21368 0.95428 1.32545 1.06989 0.90763 1.24861 0.95023 0.95840 0.97375 1.69901 1.15215 1.45239 1.23506 0.86858 0.81326 0.80871 0.80775 1.20152 1.21033 1.18795 1.17035 0.79135 0.86545 0.84538 1.90762 1.46519 1.18156 1.87947 1.23240 1.02004 1.03852 0.92747 1.21500 0.96780 0.98723 0.88450 1.20585 1.14229 0.93906 0.94220 1.22970 0.91521 0.97391 0.83427 1.44341 1.58806 1.12028 1.09460 1.22138 1.02850 0.98511 0.82441 1.15696 0.79231 0.81180 0.84524 1.91007 1.57473 1.64421 1.28660 1.46326 1.59782 1.16977 1.06713 1.21949 1.01176 0.78026 1.05030 1.18722 0.77605 0.86717 0.82454 1.90690 1.47547 1.67024 1.30935 0.92114 0.92542 0.92834 0.90709 0.90004 0.94113 0.95759 0.92664 0.82097 0.84127 0.79591 0.88407 0.89839 0.89871 0.90652 0.88615 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 37.15 0.38 -2.08 16 2 C 0.10 1.86 5.82 -4.05 -0.02 1.84 16 3 N -0.59 -13.05 2.46 -178.48 -0.44 -13.49 16 4 C 0.22 5.51 4.23 -5.19 -0.02 5.49 16 5 C -0.52 -15.61 9.94 -34.44 -0.34 -15.96 16 6 H 0.07 2.43 8.06 -52.49 -0.42 2.00 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 9 Si 0.87 22.05 27.47 -169.99 -4.67 17.38 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 13 C 0.54 11.83 7.44 -14.96 -0.11 11.72 16 14 O -0.55 -14.03 15.69 5.13 0.08 -13.95 16 15 C -0.20 -3.45 8.38 -39.33 -0.33 -3.78 16 16 C -0.03 -0.47 9.42 -37.27 -0.35 -0.82 16 17 C -0.22 -2.41 6.04 -102.80 -0.62 -3.03 16 18 C 0.17 1.17 10.20 -15.68 -0.16 1.01 16 19 N -0.53 -3.75 2.98 -128.42 -0.38 -4.13 16 20 C 0.08 0.28 9.94 59.85 0.59 0.88 16 21 C 0.69 6.94 8.09 -87.76 -0.71 6.23 16 22 O -0.54 -6.40 15.63 5.31 0.08 -6.32 16 23 N -0.55 -5.86 2.96 -129.60 -0.38 -6.24 16 24 C 0.08 0.67 10.11 59.84 0.60 1.27 16 25 C 0.55 6.81 7.60 -12.47 -0.09 6.71 16 26 O -0.49 -7.17 13.23 5.22 0.07 -7.10 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.25 6.07 -51.93 -0.32 0.93 16 31 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 32 H 0.04 1.12 6.48 -51.93 -0.34 0.78 16 33 H 0.02 0.59 7.50 -51.93 -0.39 0.20 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.16 2.72 2.83 -52.50 -0.15 2.58 16 36 H 0.14 1.87 7.46 -52.49 -0.39 1.48 16 37 H 0.19 0.52 7.84 -52.49 -0.41 0.11 16 38 H 0.10 0.03 7.72 -51.93 -0.40 -0.37 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.77 7.45 -51.93 -0.39 0.39 16 43 H 0.09 0.69 7.35 -51.93 -0.38 0.31 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -39.28 362.01 -6.40 -45.68 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.71 Total: -1.21 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -1.28 Total: 11.50 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.43 Total: -51.44 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: 0.23 Total: -27.37 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.28 -6.40 -45.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492221242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.038 kcal (2) G-P(sol) polarization free energy of solvation -39.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds