Wall clock time and date at job start Fri Apr 10 2020 18:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47208 * 2 1 4 4 C 1.46505 * 120.00296 * 89.99482 * 3 2 1 5 5 C 1.50704 * 109.46334 * 90.00168 * 4 3 2 6 6 H 1.07992 * 120.00247 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99311 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99643 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47350 * 90.00065 * 9 7 5 11 11 H 1.48506 * 109.46764 * 209.99606 * 9 7 5 12 12 H 1.48500 * 109.47388 * 329.99370 * 9 7 5 13 13 C 1.34785 * 120.00039 * 269.72901 * 3 2 1 14 14 O 1.21762 * 119.99703 * 180.02562 * 13 3 2 15 15 C 1.41626 * 119.99780 * 359.97438 * 13 3 2 16 16 C 1.35309 * 120.00033 * 179.97438 * 15 13 3 17 17 C 1.46559 * 119.99883 * 174.91174 * 16 15 13 18 18 C 1.38353 * 120.97313 * 185.57935 * 17 16 15 19 19 N 1.35949 * 119.27185 * 180.02562 * 18 17 16 20 20 C 1.46501 * 119.24659 * 179.97438 * 19 18 17 21 21 C 1.34225 * 121.50710 * 359.97438 * 19 18 17 22 22 O 1.21559 * 118.90805 * 180.02562 * 21 19 18 23 23 N 1.34390 * 122.17800 * 0.02562 * 21 19 18 24 24 C 1.46495 * 119.75897 * 180.02562 * 23 21 19 25 25 C 1.34974 * 120.47623 * 359.70177 * 23 21 19 26 26 O 1.21668 * 120.73830 * 180.30950 * 25 23 21 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47501 * 299.99926 * 1 2 3 29 29 H 1.09006 * 109.47293 * 60.00080 * 1 2 3 30 30 H 1.08999 * 109.47501 * 240.00074 * 2 1 3 31 31 H 1.08993 * 109.47022 * 120.00032 * 2 1 3 32 32 H 1.08992 * 109.47430 * 210.00145 * 4 3 2 33 33 H 1.08997 * 109.47053 * 330.01034 * 4 3 2 34 34 H 0.97001 * 120.00180 * 180.02562 * 8 7 5 35 35 H 1.08000 * 120.00220 * 0.02562 * 15 13 3 36 36 H 1.07997 * 119.99692 * 354.92003 * 16 15 13 37 37 H 1.08001 * 120.36011 * 359.97438 * 18 17 16 38 38 H 1.09000 * 109.47179 * 359.97438 * 20 19 18 39 39 H 1.08999 * 109.47227 * 119.99767 * 20 19 18 40 40 H 1.08998 * 109.47087 * 240.00234 * 20 19 18 41 41 H 1.08996 * 109.47435 * 89.99944 * 24 23 21 42 42 H 1.08999 * 109.46853 * 209.99846 * 24 23 21 43 43 H 1.08998 * 109.47125 * 329.99339 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6857 1.8350 1.7037 6 1 4.3427 1.2309 1.0958 7 6 4.1490 2.3897 2.8780 8 7 5.3912 2.1835 3.2573 9 14 3.0122 3.4341 3.9298 10 1 2.3075 2.5673 4.9080 11 1 3.8093 4.4546 4.6570 12 1 2.0164 4.1110 3.0607 13 6 2.2481 2.0147 -1.1673 14 8 2.6545 3.1626 -1.1672 15 6 2.0181 1.3449 -2.3937 16 6 2.2483 1.9811 -3.5656 17 6 2.1178 1.2546 -4.8317 18 6 2.4583 1.8506 -6.0330 19 7 2.3231 1.1449 -7.1870 20 6 2.6833 1.7767 -8.4588 21 6 1.8670 -0.1175 -7.1879 22 8 1.7653 -0.7048 -8.2474 23 7 1.5193 -0.7537 -6.0564 24 6 1.0282 -2.1325 -6.1189 25 6 1.6253 -0.1337 -4.8622 26 8 1.3171 -0.7070 -3.8343 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8899 32 1 2.0954 3.1410 1.1384 33 1 1.5817 1.6877 2.0284 34 1 5.7171 2.5734 4.0836 35 1 1.6580 0.3267 -2.3937 36 1 2.5284 3.0241 -3.5678 37 1 2.8267 2.8656 -6.0536 38 1 3.0308 2.7931 -8.2739 39 1 3.4764 1.2027 -8.9379 40 1 1.8102 1.8046 -9.1107 41 1 1.8684 -2.8216 -6.0339 42 1 0.3307 -2.3072 -5.2997 43 1 0.5201 -2.2945 -7.0695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492221242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:42 Heat of formation + Delta-G solvation = -58.773635 kcal Electronic energy + Delta-G solvation = -27103.443150 eV Core-core repulsion = 23149.978419 eV Total energy + Delta-G solvation = -3953.464731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.36598 -40.92498 -40.22023 -38.54922 -37.01590 -36.53331 -35.16046 -34.74376 -32.10074 -31.41785 -29.75043 -29.19356 -27.83935 -25.92307 -24.72551 -24.42648 -24.01515 -22.15605 -20.69869 -19.22161 -19.03131 -18.67201 -18.49343 -18.30612 -17.57252 -17.10990 -16.70650 -16.30565 -16.05888 -15.93603 -15.66749 -15.10552 -14.79711 -14.74797 -14.69004 -14.49819 -14.26084 -13.90336 -13.69995 -13.48357 -13.39204 -13.32364 -13.20511 -13.14525 -12.64837 -12.58802 -12.34699 -12.13437 -12.06386 -11.86830 -11.74514 -11.24165 -11.12888 -10.92351 -10.80695 -10.48676 -9.43524 -8.90513 -8.32525 -6.37541 -0.54014 0.52153 0.80026 0.98842 1.33055 1.37300 1.49308 1.76904 2.24585 2.33218 2.43969 2.72590 3.01108 3.09592 3.51501 3.89574 4.05514 4.12464 4.13205 4.26724 4.28825 4.36812 4.41478 4.49407 4.51678 4.59273 4.66060 4.71511 4.78282 4.85498 4.96453 4.96605 5.01183 5.03655 5.13633 5.34478 5.41493 5.48677 5.60172 5.75399 6.02617 6.27644 6.33907 6.62897 6.71522 6.77621 7.23079 7.49160 8.84862 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002898 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.756766 B = 9658.249223 C =10314.791886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.600 5.600 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.024 0.976 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.951 3.049 10 H -0.252 1.252 11 H -0.278 1.278 12 H -0.255 1.255 13 C 0.534 3.466 14 O -0.605 6.605 15 C -0.261 4.261 16 C 0.026 3.974 17 C -0.278 4.278 18 C 0.245 3.755 19 N -0.520 5.520 20 C 0.070 3.930 21 C 0.685 3.315 22 O -0.558 6.558 23 N -0.557 5.557 24 C 0.075 3.925 25 C 0.544 3.456 26 O -0.523 6.523 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.045 0.955 34 H 0.269 0.731 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.244 0.756 38 H 0.142 0.858 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.066 -2.830 -26.758 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.329 5.329 4 C 0.104 3.896 5 C -0.575 4.575 6 H 0.043 0.957 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.773 3.227 10 H -0.176 1.176 11 H -0.204 1.204 12 H -0.179 1.179 13 C 0.328 3.672 14 O -0.490 6.490 15 C -0.281 4.281 16 C 0.005 3.995 17 C -0.287 4.287 18 C 0.117 3.883 19 N -0.235 5.235 20 C -0.069 4.069 21 C 0.388 3.612 22 O -0.433 6.433 23 N -0.300 5.300 24 C -0.065 4.065 25 C 0.340 3.660 26 O -0.400 6.400 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.260 0.740 38 H 0.160 0.840 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.997 -2.992 -26.795 29.118 hybrid contribution 0.202 0.032 1.045 1.065 sum -10.795 -2.960 -25.750 28.077 Atomic orbital electron populations 1.22081 0.94003 1.03279 1.01810 1.21664 0.95664 0.81591 1.03053 1.47967 1.63770 1.14930 1.06244 1.19287 0.94693 0.93189 0.82473 1.21565 0.97054 1.32095 1.06800 0.95739 1.25881 0.96855 0.97141 0.98846 1.70056 1.17493 1.46656 1.24449 0.85661 0.79081 0.79053 0.78869 1.17625 1.20380 1.17896 1.17738 0.77653 0.86065 0.85715 1.90697 1.49393 1.20221 1.88679 1.22863 1.09037 1.04497 0.91695 1.21712 0.90524 0.98605 0.88708 1.20259 1.19933 0.93971 0.94551 1.23741 0.84716 0.98210 0.81596 1.44749 1.56614 1.11067 1.11023 1.22591 1.03215 1.00475 0.80610 1.15946 0.79152 0.82097 0.83981 1.91005 1.58076 1.65097 1.29139 1.46422 1.59407 1.17594 1.06547 1.22058 1.01501 0.77489 1.05455 1.18980 0.77321 0.87299 0.82369 1.90657 1.49415 1.67838 1.32043 0.89241 0.92836 0.92822 0.89971 0.90996 0.95921 0.93754 0.92213 0.81914 0.83271 0.74020 0.83958 0.89779 0.89468 0.90133 0.88655 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 10.24 71.98 0.74 -3.78 16 2 C 0.10 3.81 5.82 86.38 0.50 4.31 16 3 N -0.60 -27.95 2.46 -836.77 -2.06 -30.00 16 4 C 0.23 11.96 4.23 85.63 0.36 12.32 16 5 C -0.54 -33.52 9.94 25.60 0.25 -33.27 16 6 H 0.02 1.71 8.06 -2.91 -0.02 1.69 16 7 C 0.01 0.64 5.47 84.66 0.46 1.10 16 8 N -0.95 -61.66 13.96 21.45 0.30 -61.36 16 9 Si 0.95 46.03 27.47 68.60 1.88 47.91 16 10 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.25 -11.93 6.54 99.48 0.65 -11.27 16 13 C 0.53 24.67 7.44 85.08 0.63 25.30 16 14 O -0.60 -32.08 15.69 -4.55 -0.07 -32.15 16 15 C -0.26 -9.37 8.38 22.43 0.19 -9.18 16 16 C 0.03 0.69 9.42 23.77 0.22 0.92 16 17 C -0.28 -5.44 6.04 -18.69 -0.11 -5.55 16 18 C 0.24 2.09 10.20 84.08 0.86 2.95 16 19 N -0.52 -5.02 2.98 -678.79 -2.02 -7.04 16 20 C 0.07 0.11 9.94 127.77 1.27 1.38 16 21 C 0.68 11.96 8.09 179.35 1.45 13.41 16 22 O -0.56 -11.91 15.63 -3.90 -0.06 -11.97 16 23 N -0.56 -11.05 2.96 -800.54 -2.37 -13.42 16 24 C 0.08 1.23 10.11 127.77 1.29 2.52 16 25 C 0.54 13.04 7.60 86.61 0.66 13.70 16 26 O -0.52 -15.69 13.23 -4.25 -0.06 -15.75 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.08 2.90 6.07 -2.39 -0.01 2.89 16 31 H 0.07 2.74 8.07 -2.39 -0.02 2.72 16 32 H 0.02 1.28 6.48 -2.39 -0.02 1.26 16 33 H 0.04 2.14 7.50 -2.39 -0.02 2.13 16 34 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 35 H 0.16 5.76 2.83 -3.20 -0.01 5.75 16 36 H 0.15 3.69 7.46 -2.91 -0.02 3.67 16 37 H 0.24 -0.56 7.84 -2.91 -0.02 -0.58 16 38 H 0.14 -0.96 7.72 -2.39 -0.02 -0.98 16 39 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 1.56 7.45 -2.39 -0.02 1.54 16 43 H 0.10 1.43 7.35 -2.39 -0.02 1.42 16 Total: -1.00 -93.45 362.01 5.31 -88.14 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.98 Total: 9.49 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 8.78 Total: 26.14 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -6.15 Total: -111.82 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -0.19 Total: -59.86 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.88 Total: 47.91 kcal Total: -93.45 5.31 -88.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492221242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.370 kcal (2) G-P(sol) polarization free energy of solvation -93.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds