Wall clock time and date at job start Fri Apr 10 2020 18:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34838 * 119.86688 * 2 1 4 4 O 1.21781 * 120.30830 * 359.97438 * 3 2 1 5 5 C 1.41576 * 119.38232 * 180.02562 * 3 2 1 6 6 C 1.35019 * 119.11636 * 0.27212 * 5 3 2 7 7 N 1.36837 * 119.68306 * 359.43744 * 6 5 3 8 8 C 1.46496 * 119.68970 * 180.29767 * 7 6 5 9 9 C 1.50696 * 109.47106 * 270.27223 * 8 7 6 10 10 O 1.21277 * 120.00309 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00068 * 180.02562 * 9 8 7 12 12 C 1.46919 * 120.62982 * 359.72157 * 11 9 8 13 13 C 1.52767 * 109.00854 * 233.58572 * 12 11 9 14 14 C 1.53039 * 109.37908 * 305.58448 * 13 12 11 15 15 C 1.50709 * 109.44816 * 181.25048 * 14 13 12 16 16 H 1.07992 * 120.00304 * 245.39532 * 15 14 13 17 17 C 1.37877 * 119.99364 * 65.39080 * 15 14 13 18 18 N 1.31513 * 120.00192 * 9.58096 * 17 15 14 19 19 Si 1.86796 * 119.99777 * 189.57630 * 17 15 14 20 20 H 1.48498 * 109.47385 * 94.99273 * 19 17 15 21 21 H 1.48502 * 109.47452 * 214.99448 * 19 17 15 22 22 H 1.48500 * 109.47325 * 334.99246 * 19 17 15 23 23 C 1.53045 * 109.53551 * 61.24297 * 14 13 12 24 24 C 1.46925 * 120.63242 * 179.97438 * 11 9 8 25 25 C 1.34540 * 120.61867 * 0.57052 * 7 6 5 26 26 O 1.21590 * 119.53629 * 179.69768 * 25 7 6 27 27 H 1.09001 * 109.47298 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47049 * 120.00337 * 1 2 3 29 29 H 1.09001 * 109.46903 * 239.99817 * 1 2 3 30 30 H 1.08004 * 120.43895 * 180.02562 * 5 3 2 31 31 H 1.07996 * 120.15942 * 179.70059 * 6 5 3 32 32 H 1.09002 * 109.47557 * 30.27252 * 8 7 6 33 33 H 1.09001 * 109.47113 * 150.27244 * 8 7 6 34 34 H 1.09007 * 109.58891 * 353.41428 * 12 11 9 35 35 H 1.09000 * 109.58960 * 113.84500 * 12 11 9 36 36 H 1.09003 * 109.56496 * 185.55021 * 13 12 11 37 37 H 1.09000 * 109.38744 * 65.51101 * 13 12 11 38 38 H 1.08992 * 109.46405 * 301.21934 * 14 13 12 39 39 H 0.97004 * 120.00243 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.49528 * 178.68072 * 23 14 13 41 41 H 1.08997 * 109.52394 * 58.60264 * 23 14 13 42 42 H 1.08995 * 109.59125 * 246.15746 * 24 11 9 43 43 H 1.09008 * 109.58557 * 6.43878 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1365 1.1693 0.0000 4 8 1.5308 2.2258 -0.0005 5 6 3.5522 1.1573 -0.0006 6 6 4.1992 -0.0277 -0.0067 7 7 3.4805 -1.1922 -0.0005 8 6 4.1824 -2.4780 -0.0006 9 6 4.4225 -2.9192 -1.4213 10 8 4.0450 -2.2275 -2.3432 11 7 5.0568 -4.0827 -1.6677 12 6 5.5254 -4.9285 -0.5616 13 6 7.0111 -5.2255 -0.7572 14 6 7.2298 -5.8288 -2.1465 15 6 8.6907 -6.1508 -2.3295 16 1 9.2716 -5.6217 -3.0703 17 6 9.2854 -7.1209 -1.5509 18 7 8.5467 -7.8939 -0.7852 19 14 11.1405 -7.3373 -1.5838 20 1 11.7483 -6.5701 -0.4670 21 1 11.4738 -8.7767 -1.4345 22 1 11.6745 -6.8371 -2.8761 23 6 6.7913 -4.8249 -3.2152 24 6 5.2977 -4.5265 -3.0474 25 6 2.1353 -1.1672 0.0000 26 8 1.5164 -2.2138 -0.0001 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 -0.3633 -0.5139 0.8900 30 1 4.1072 2.0838 -0.0001 31 1 5.2787 -0.0565 -0.0121 32 1 5.1379 -2.3706 0.5129 33 1 3.5754 -3.2233 0.5136 34 1 5.3800 -4.4068 0.3844 35 1 4.9664 -5.8643 -0.5549 36 1 7.3453 -5.9317 0.0029 37 1 7.5798 -4.2998 -0.6689 38 1 6.6420 -6.7416 -2.2427 39 1 8.9651 -8.5766 -0.2377 40 1 6.9691 -5.2460 -4.2047 41 1 7.3616 -3.9026 -3.1045 42 1 4.7198 -5.4287 -3.2473 43 1 4.9997 -3.7404 -3.7414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543838593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:02 Heat of formation + Delta-G solvation = -64.286746 kcal Electronic energy + Delta-G solvation = -27537.001560 eV Core-core repulsion = 23583.297763 eV Total energy + Delta-G solvation = -3953.703798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.54548 -40.09248 -39.01278 -37.55883 -36.80437 -35.36852 -33.68858 -32.41724 -31.38597 -30.41319 -28.67751 -27.80698 -26.11072 -24.08292 -23.79156 -23.00676 -22.44834 -20.36328 -19.46101 -18.75885 -18.02671 -17.52418 -17.23015 -16.81322 -16.28916 -16.01547 -15.37937 -15.24646 -15.22944 -14.60307 -14.37721 -13.99139 -13.76366 -13.70453 -13.39851 -13.32056 -13.07677 -12.82597 -12.65844 -12.51198 -12.15960 -12.00935 -11.78111 -11.53337 -11.07881 -11.01581 -10.76034 -10.54487 -10.46071 -10.33337 -9.99997 -9.93274 -9.72408 -9.22941 -9.15687 -8.77872 -8.46228 -8.25869 -6.16179 -4.18077 0.77904 1.58543 1.82624 2.59626 2.73059 3.11152 3.20941 3.29739 3.32539 3.37224 4.12951 4.32600 4.33266 4.43287 4.63634 4.88795 4.94400 5.13485 5.13845 5.17995 5.24279 5.32019 5.38527 5.49752 5.63350 5.75346 5.79831 5.88551 6.00702 6.03601 6.15114 6.26599 6.46127 6.70323 6.86151 6.89782 6.97651 7.01105 7.29636 7.50480 7.61936 7.70415 7.75471 7.84377 8.19524 8.27905 8.85696 9.46506 10.92410 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029028 B = 0.002720 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.363330 B =10290.155688 C =10478.356923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.556 5.556 3 C 0.550 3.450 4 O -0.524 6.524 5 C -0.303 4.303 6 C 0.190 3.810 7 N -0.517 5.517 8 C 0.090 3.910 9 C 0.497 3.503 10 O -0.546 6.546 11 N -0.592 5.592 12 C 0.100 3.900 13 C -0.119 4.119 14 C 0.046 3.954 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.122 4.122 24 C 0.112 3.888 25 C 0.699 3.301 26 O -0.534 6.534 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.036 0.964 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 12.181 5.398 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.300 5.300 3 C 0.347 3.653 4 O -0.401 6.401 5 C -0.330 4.330 6 C 0.066 3.934 7 N -0.235 5.235 8 C -0.035 4.035 9 C 0.282 3.718 10 O -0.425 6.425 11 N -0.324 5.324 12 C -0.022 4.022 13 C -0.158 4.158 14 C 0.028 3.972 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.160 4.160 24 C -0.010 4.010 25 C 0.402 3.598 26 O -0.407 6.407 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.189 0.811 31 H 0.196 0.804 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.100 12.241 5.038 16.650 hybrid contribution 1.276 -0.331 0.055 1.320 sum -8.823 11.909 5.093 15.672 Atomic orbital electron populations 1.21887 0.75437 1.05025 1.03789 1.46306 1.10398 1.06310 1.67010 1.17393 0.89022 0.82871 0.75996 1.90854 1.70762 1.29309 1.49127 1.21847 0.92906 0.99041 1.19168 1.22377 0.99082 0.84147 0.87820 1.44363 1.05058 1.07728 1.66376 1.21875 0.99709 0.84514 0.97404 1.20526 0.78729 0.81781 0.90758 1.90707 1.51891 1.54196 1.45662 1.48187 1.55262 1.20074 1.08916 1.22027 0.98968 0.94132 0.87070 1.21898 0.90233 1.00502 1.03133 1.18653 0.96671 0.92989 0.88903 1.21148 0.94591 1.19908 1.19794 0.92652 1.24950 0.97907 0.95127 0.95732 1.69941 1.34869 1.19878 1.27959 0.86664 0.86127 0.77308 0.78437 1.20705 1.21287 1.19907 1.22015 0.92263 1.00554 1.01186 1.21782 0.98355 0.99454 0.81420 1.15761 0.81331 0.84337 0.78337 1.91022 1.65796 1.30158 1.53677 0.88052 0.90388 0.90412 0.81067 0.80423 0.85253 0.85037 0.91574 0.91122 0.89343 0.93832 0.94601 0.92919 0.91835 0.92967 0.91809 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.00 59.85 0.60 1.42 16 2 N -0.56 -6.99 2.96 -131.49 -0.39 -7.38 16 3 C 0.55 6.98 7.45 -14.96 -0.11 6.86 16 4 O -0.52 -7.88 16.44 5.12 0.08 -7.80 16 5 C -0.30 -2.89 10.00 -39.45 -0.39 -3.28 16 6 C 0.19 1.62 10.38 -16.46 -0.17 1.45 16 7 N -0.52 -5.78 2.10 -122.83 -0.26 -6.04 16 8 C 0.09 0.95 4.16 -5.20 -0.02 0.93 16 9 C 0.50 7.37 7.76 -10.98 -0.09 7.28 16 10 O -0.55 -9.94 15.84 5.56 0.09 -9.85 16 11 N -0.59 -9.15 2.98 -173.01 -0.52 -9.66 16 12 C 0.10 1.47 6.31 -3.93 -0.02 1.45 16 13 C -0.12 -2.25 5.19 -26.83 -0.14 -2.39 16 14 C 0.05 1.01 1.93 -91.72 -0.18 0.83 16 15 C -0.52 -12.91 8.48 -34.44 -0.29 -13.20 16 16 H 0.06 1.40 7.77 -52.49 -0.41 0.99 16 17 C 0.06 1.65 5.19 -17.82 -0.09 1.56 16 18 N -0.89 -23.32 12.16 55.43 0.67 -22.65 16 19 Si 0.89 19.88 29.55 -169.99 -5.02 14.85 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.12 -2.27 5.30 -26.59 -0.14 -2.41 16 24 C 0.11 1.86 6.44 -3.69 -0.02 1.84 16 25 C 0.70 9.46 8.12 -87.29 -0.71 8.75 16 26 O -0.53 -8.48 15.79 5.29 0.08 -8.39 16 27 H 0.10 0.97 6.90 -51.93 -0.36 0.62 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.13 0.87 7.57 -51.93 -0.39 0.48 16 33 H 0.13 1.33 7.18 -51.93 -0.37 0.96 16 34 H 0.07 0.73 5.94 -51.92 -0.31 0.42 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.89 6.87 -51.93 -0.36 1.53 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.34 7.00 -51.92 -0.36 0.98 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -33.05 354.60 -7.62 -40.67 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.92 Total: -0.15 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -1.78 Total: 11.07 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.49 Total: -45.74 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: 0.26 Total: -26.04 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.05 -7.62 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543838593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.621 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds