Wall clock time and date at job start Fri Apr 10 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47469 * 2 1 4 4 C 1.42892 * 113.99943 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.38307 * 119.96735 * 270.27415 * 5 4 3 7 7 C 1.38256 * 120.14615 * 180.27345 * 6 5 4 8 8 C 1.38136 * 120.06570 * 359.45137 * 7 6 5 9 9 C 1.38850 * 119.93133 * 0.27286 * 8 7 6 10 10 N 1.39940 * 120.06888 * 179.97438 * 9 8 7 11 11 C 1.34782 * 120.00320 * 33.26895 * 10 9 8 12 12 O 1.21583 * 119.99749 * 5.31983 * 11 10 9 13 13 N 1.34771 * 120.00056 * 185.31467 * 11 10 9 14 14 C 1.46494 * 120.00040 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47265 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00004 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99760 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99617 * 179.97438 * 17 15 14 19 19 H 1.08007 * 120.00481 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99999 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00168 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99981 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47050 * 89.99917 * 22 20 18 24 24 H 1.48502 * 109.47174 * 210.00376 * 22 20 18 25 25 H 1.48498 * 109.46872 * 330.00081 * 22 20 18 26 26 C 1.38095 * 119.96873 * 89.99943 * 5 4 3 27 27 H 1.09004 * 109.46790 * 300.00024 * 1 2 3 28 28 H 1.08996 * 109.47247 * 59.99826 * 1 2 3 29 29 H 1.09000 * 109.47692 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47082 * 239.99539 * 2 1 3 31 31 H 1.09006 * 109.47302 * 120.00174 * 2 1 3 32 32 H 1.08999 * 109.47605 * 59.99921 * 4 3 2 33 33 H 1.09003 * 109.47523 * 299.99615 * 4 3 2 34 34 H 1.08007 * 119.92474 * 0.02562 * 6 5 4 35 35 H 1.07994 * 119.96816 * 179.72236 * 7 6 5 36 36 H 1.07999 * 120.03255 * 180.25040 * 8 7 6 37 37 H 0.97001 * 119.99829 * 213.27182 * 10 9 8 38 38 H 0.97008 * 120.00234 * 0.02562 * 13 11 10 39 39 H 1.09003 * 109.47319 * 299.99838 * 14 13 11 40 40 H 1.08998 * 109.47678 * 60.00037 * 14 13 11 41 41 H 0.96994 * 120.00298 * 0.02562 * 17 15 14 42 42 H 0.96997 * 120.00102 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.03143 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9160 0.0001 6 6 3.9916 3.5856 -1.1977 7 6 4.3537 4.9199 -1.2014 8 6 4.5337 5.5915 -0.0078 9 6 4.3561 4.9236 1.1965 10 7 4.5382 5.6010 2.4074 11 6 4.2251 6.9086 2.5019 12 8 3.6948 7.4758 1.5664 13 7 4.4996 7.5871 3.6335 14 6 4.1587 9.0081 3.7365 15 6 4.5675 9.5259 5.0915 16 8 5.0924 8.7813 5.8922 17 7 4.3507 10.8167 5.4131 18 6 4.7221 11.2876 6.6459 19 1 5.1887 10.6243 7.3593 20 6 4.4981 12.6182 6.9777 21 7 4.8546 13.0697 8.1593 22 14 3.6904 13.7652 5.7443 23 1 2.2172 13.7301 5.9269 24 1 4.1831 15.1495 5.9593 25 1 4.0290 13.3277 4.3662 26 6 3.9980 3.5817 1.1967 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8333 0.9766 -0.8908 33 1 3.8341 0.9764 0.8892 34 1 3.8467 3.0640 -2.1323 35 1 4.4916 5.4389 -2.1385 36 1 4.8125 6.6349 -0.0113 37 1 4.8899 5.1295 3.1787 38 1 4.9229 7.1346 4.3799 39 1 4.6850 9.5651 2.9612 40 1 3.0837 9.1342 3.6082 41 1 3.9313 11.4123 4.7726 42 1 4.6986 13.9986 8.3908 43 1 3.8595 3.0594 2.1318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562187834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:06 Heat of formation + Delta-G solvation = -79.749903 kcal Electronic energy + Delta-G solvation = -25337.166220 eV Core-core repulsion = 21382.791889 eV Total energy + Delta-G solvation = -3954.374330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72203 -39.31770 -38.49389 -37.87221 -34.96523 -34.56381 -33.83702 -32.56351 -31.83234 -30.90326 -29.95322 -27.60110 -26.21152 -24.45876 -23.14540 -22.61686 -22.23701 -20.43601 -19.67399 -18.87556 -18.34036 -17.48899 -16.95506 -16.52142 -16.35223 -15.74227 -15.71194 -15.29424 -15.04832 -14.84931 -14.54243 -14.24634 -14.11411 -13.79969 -13.42090 -13.20030 -13.16145 -12.78558 -12.63792 -12.53558 -12.20055 -12.18033 -11.88560 -11.76692 -11.57805 -11.25857 -11.20960 -10.66160 -10.48277 -10.14180 -10.08177 -9.98010 -9.72662 -9.03526 -8.98865 -8.81384 -8.33457 -8.15038 -6.43242 -3.96077 1.13218 1.20545 2.53243 2.97935 3.02918 3.06019 3.11328 3.36030 3.53193 3.87832 4.01365 4.12292 4.52086 4.53458 4.59800 4.67950 4.83970 4.88814 4.97434 4.99764 5.08704 5.11590 5.23053 5.32580 5.39417 5.51018 5.55038 5.60181 5.73363 5.75137 5.78342 5.79521 6.16549 6.21652 6.39903 6.41929 6.50885 6.82544 6.87868 6.94589 7.41867 7.93677 7.99225 8.40514 8.52872 8.78814 9.26823 9.59799 10.68774 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.001928 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.154847 B =14519.744905 C =14843.436802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.382 6.382 4 C 0.107 3.893 5 C -0.075 4.075 6 C -0.120 4.120 7 C -0.102 4.102 8 C -0.114 4.114 9 C 0.173 3.827 10 N -0.688 5.688 11 C 0.705 3.295 12 O -0.579 6.579 13 N -0.718 5.718 14 C 0.125 3.875 15 C 0.437 3.563 16 O -0.580 6.580 17 N -0.575 5.575 18 C -0.311 4.311 19 H 0.122 0.878 20 C 0.046 3.954 21 N -0.873 5.873 22 Si 0.879 3.121 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.267 1.267 26 C -0.129 4.129 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.409 0.591 38 H 0.410 0.590 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.375 0.625 42 H 0.276 0.724 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 -22.837 -18.868 29.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.302 6.302 4 C 0.030 3.970 5 C -0.076 4.076 6 C -0.139 4.139 7 C -0.121 4.121 8 C -0.134 4.134 9 C 0.077 3.923 10 N -0.335 5.335 11 C 0.405 3.595 12 O -0.456 6.456 13 N -0.375 5.375 14 C -0.004 4.004 15 C 0.223 3.777 16 O -0.464 6.464 17 N -0.212 5.212 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.512 5.512 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.150 4.150 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.156 0.844 37 H 0.244 0.756 38 H 0.248 0.752 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.208 0.792 42 H 0.087 0.913 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.543 -22.355 -18.915 29.497 hybrid contribution -0.116 0.472 0.006 0.487 sum -3.659 -21.882 -18.909 29.151 Atomic orbital electron populations 1.21746 0.93662 1.02192 1.03351 1.22476 0.95744 0.83840 1.00000 1.88014 1.20470 1.26288 1.95389 1.21263 0.81845 0.93035 1.00810 1.19236 1.00764 0.94657 0.92944 1.20955 1.01021 0.94704 0.97248 1.21013 0.99129 0.94137 0.97819 1.21287 1.00133 1.01210 0.90787 1.17438 0.98457 0.91184 0.85175 1.42591 1.68406 1.09608 1.12937 1.15799 0.79286 0.80910 0.83495 1.90930 1.48177 1.68137 1.38385 1.44757 1.65267 1.10940 1.16577 1.20860 1.01597 0.80625 0.97268 1.19609 0.85908 0.83404 0.88759 1.90537 1.48027 1.56299 1.51542 1.42105 1.54465 1.08736 1.15911 1.19439 1.38206 0.95818 0.90483 0.86069 1.25072 0.97357 0.96902 0.96546 1.69617 1.45442 1.16512 1.19633 0.86667 0.80408 0.81414 0.80991 1.19359 1.19955 1.19197 1.20693 1.02469 0.93539 0.98282 0.91738 0.91797 0.91119 0.93433 0.93389 0.92385 0.92474 0.86094 0.85577 0.84363 0.75587 0.75215 0.89627 0.89627 0.79196 0.91348 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.38 -3.79 10.33 -35.23 -0.36 -4.15 16 4 C 0.11 0.87 6.06 36.00 0.22 1.08 16 5 C -0.08 -0.75 5.51 -104.65 -0.58 -1.33 16 6 C -0.12 -1.18 9.70 -39.55 -0.38 -1.56 16 7 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 8 C -0.11 -1.45 8.66 -39.39 -0.34 -1.80 16 9 C 0.17 2.13 6.28 -83.69 -0.53 1.61 16 10 N -0.69 -8.32 5.35 -14.22 -0.08 -8.39 16 11 C 0.70 10.80 8.30 -86.92 -0.72 10.08 16 12 O -0.58 -10.51 14.03 5.29 0.07 -10.44 16 13 N -0.72 -11.13 5.53 -66.42 -0.37 -11.50 16 14 C 0.12 2.11 6.15 -5.19 -0.03 2.08 16 15 C 0.44 9.43 7.85 -10.98 -0.09 9.34 16 16 O -0.58 -14.35 15.24 5.55 0.08 -14.26 16 17 N -0.57 -13.17 5.09 -10.96 -0.06 -13.23 16 18 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 19 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 20 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 21 N -0.87 -24.75 13.96 55.50 0.77 -23.98 16 22 Si 0.88 18.85 27.74 -169.99 -4.71 14.14 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.22 6.52 56.52 0.37 -4.86 16 26 C -0.13 -1.37 9.62 -39.39 -0.38 -1.75 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.97 6.41 -52.49 -0.34 1.63 16 37 H 0.41 3.72 8.83 -40.82 -0.36 3.36 16 38 H 0.41 6.14 7.46 -40.82 -0.30 5.83 16 39 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 42 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -33.63 370.25 -7.77 -41.40 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -5.86 Total: 16.01 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -2.84 Total: 8.82 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.20 Total: -28.85 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -4.71 Total: 14.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.63 -7.77 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562187834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.348 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds