Wall clock time and date at job start Fri Apr 10 2020 18:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47469 * 2 1 4 4 C 1.42892 * 113.99943 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.38307 * 119.96735 * 270.27415 * 5 4 3 7 7 C 1.38256 * 120.14615 * 180.27345 * 6 5 4 8 8 C 1.38136 * 120.06570 * 359.45137 * 7 6 5 9 9 C 1.38850 * 119.93133 * 0.27286 * 8 7 6 10 10 N 1.39940 * 120.06888 * 179.97438 * 9 8 7 11 11 C 1.34782 * 120.00320 * 33.26895 * 10 9 8 12 12 O 1.21583 * 119.99749 * 5.31983 * 11 10 9 13 13 N 1.34771 * 120.00056 * 185.31467 * 11 10 9 14 14 C 1.46494 * 120.00040 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47265 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00004 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99760 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99617 * 179.97438 * 17 15 14 19 19 H 1.08007 * 120.00481 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99999 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00168 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99981 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47050 * 89.99917 * 22 20 18 24 24 H 1.48502 * 109.47174 * 210.00376 * 22 20 18 25 25 H 1.48498 * 109.46872 * 330.00081 * 22 20 18 26 26 C 1.38095 * 119.96873 * 89.99943 * 5 4 3 27 27 H 1.09004 * 109.46790 * 300.00024 * 1 2 3 28 28 H 1.08996 * 109.47247 * 59.99826 * 1 2 3 29 29 H 1.09000 * 109.47692 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47082 * 239.99539 * 2 1 3 31 31 H 1.09006 * 109.47302 * 120.00174 * 2 1 3 32 32 H 1.08999 * 109.47605 * 59.99921 * 4 3 2 33 33 H 1.09003 * 109.47523 * 299.99615 * 4 3 2 34 34 H 1.08007 * 119.92474 * 0.02562 * 6 5 4 35 35 H 1.07994 * 119.96816 * 179.72236 * 7 6 5 36 36 H 1.07999 * 120.03255 * 180.25040 * 8 7 6 37 37 H 0.97001 * 119.99829 * 213.27182 * 10 9 8 38 38 H 0.97008 * 120.00234 * 0.02562 * 13 11 10 39 39 H 1.09003 * 109.47319 * 299.99838 * 14 13 11 40 40 H 1.08998 * 109.47678 * 60.00037 * 14 13 11 41 41 H 0.96994 * 120.00298 * 0.02562 * 17 15 14 42 42 H 0.96997 * 120.00102 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.03143 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9160 0.0001 6 6 3.9916 3.5856 -1.1977 7 6 4.3537 4.9199 -1.2014 8 6 4.5337 5.5915 -0.0078 9 6 4.3561 4.9236 1.1965 10 7 4.5382 5.6010 2.4074 11 6 4.2251 6.9086 2.5019 12 8 3.6948 7.4758 1.5664 13 7 4.4996 7.5871 3.6335 14 6 4.1587 9.0081 3.7365 15 6 4.5675 9.5259 5.0915 16 8 5.0924 8.7813 5.8922 17 7 4.3507 10.8167 5.4131 18 6 4.7221 11.2876 6.6459 19 1 5.1887 10.6243 7.3593 20 6 4.4981 12.6182 6.9777 21 7 4.8546 13.0697 8.1593 22 14 3.6904 13.7652 5.7443 23 1 2.2172 13.7301 5.9269 24 1 4.1831 15.1495 5.9593 25 1 4.0290 13.3277 4.3662 26 6 3.9980 3.5817 1.1967 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8333 0.9766 -0.8908 33 1 3.8341 0.9764 0.8892 34 1 3.8467 3.0640 -2.1323 35 1 4.4916 5.4389 -2.1385 36 1 4.8125 6.6349 -0.0113 37 1 4.8899 5.1295 3.1787 38 1 4.9229 7.1346 4.3799 39 1 4.6850 9.5651 2.9612 40 1 3.0837 9.1342 3.6082 41 1 3.9313 11.4123 4.7726 42 1 4.6986 13.9986 8.3908 43 1 3.8595 3.0594 2.1318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562187834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:05 Heat of formation + Delta-G solvation = -105.082972 kcal Electronic energy + Delta-G solvation = -25338.264744 eV Core-core repulsion = 21382.791889 eV Total energy + Delta-G solvation = -3955.472855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81306 -40.53662 -39.86738 -38.63221 -36.34814 -35.89863 -35.41386 -33.84144 -33.23465 -31.54405 -30.93409 -29.05240 -26.90565 -26.26913 -23.63323 -23.53617 -23.19343 -21.54681 -21.42708 -20.55512 -19.67077 -18.51961 -17.57075 -17.51197 -17.26868 -17.15141 -16.81854 -16.78912 -16.29135 -16.04523 -15.72932 -15.40088 -15.35379 -14.91387 -14.59322 -14.34026 -14.11400 -14.03112 -13.92100 -13.65204 -13.53119 -13.15978 -12.97062 -12.62634 -12.44963 -12.35386 -12.14717 -12.00500 -11.90016 -11.58667 -11.54066 -11.24587 -10.67215 -10.53558 -10.35586 -10.26396 -9.82270 -9.06251 -8.45983 -6.08108 0.29375 0.37604 1.30970 1.34195 1.39685 1.45097 1.77436 1.95349 2.20261 2.61864 2.74296 3.10215 3.12834 3.19500 3.84259 3.93400 3.97170 4.16200 4.21638 4.30571 4.35905 4.37413 4.41419 4.41964 4.49829 4.54102 4.60145 4.73961 4.88716 5.00389 5.05654 5.17049 5.28647 5.30141 5.37666 5.47796 5.56954 5.62513 5.85683 5.87852 6.06941 6.30060 6.47897 6.77338 6.83966 7.26749 7.35908 7.76988 8.70306 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.001928 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.154847 B =14519.744905 C =14843.436802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.106 3.894 5 C -0.080 4.080 6 C -0.119 4.119 7 C -0.106 4.106 8 C -0.136 4.136 9 C 0.151 3.849 10 N -0.675 5.675 11 C 0.707 3.293 12 O -0.607 6.607 13 N -0.719 5.719 14 C 0.137 3.863 15 C 0.446 3.554 16 O -0.614 6.614 17 N -0.577 5.577 18 C -0.332 4.332 19 H 0.064 0.936 20 C -0.008 4.008 21 N -0.925 5.925 22 Si 0.958 3.042 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.232 1.232 26 C -0.129 4.129 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.422 0.578 38 H 0.412 0.588 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.392 0.608 42 H 0.281 0.719 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.411 -24.046 -21.781 32.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.331 6.331 4 C 0.030 3.970 5 C -0.081 4.081 6 C -0.137 4.137 7 C -0.124 4.124 8 C -0.156 4.156 9 C 0.056 3.944 10 N -0.323 5.323 11 C 0.407 3.593 12 O -0.487 6.487 13 N -0.376 5.376 14 C 0.009 3.991 15 C 0.233 3.767 16 O -0.500 6.500 17 N -0.217 5.217 18 C -0.461 4.461 19 H 0.082 0.918 20 C -0.208 4.208 21 N -0.565 5.565 22 Si 0.778 3.222 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.155 1.155 26 C -0.150 4.150 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.136 0.864 37 H 0.260 0.740 38 H 0.250 0.750 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.228 0.772 42 H 0.091 0.909 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.619 -23.623 -21.840 32.502 hybrid contribution 0.263 0.644 0.919 1.153 sum -4.356 -22.978 -20.921 31.379 Atomic orbital electron populations 1.21782 0.93595 1.03251 1.02382 1.22659 0.95876 0.82798 1.01239 1.87968 1.21325 1.28152 1.95653 1.21359 0.81370 0.91788 1.02507 1.19590 0.99905 0.95865 0.92747 1.21280 0.99754 0.94372 0.98324 1.21251 0.98610 0.94712 0.97824 1.21282 1.01711 1.00612 0.92040 1.17640 0.99878 0.91981 0.84895 1.42412 1.67747 1.08540 1.13637 1.15825 0.79009 0.81681 0.82774 1.90911 1.49549 1.69040 1.39194 1.44686 1.65567 1.10492 1.16891 1.20749 1.02817 0.81468 0.94048 1.20466 0.83692 0.82596 0.89953 1.90527 1.48979 1.57201 1.53304 1.41905 1.55269 1.09588 1.14902 1.19031 1.39526 0.95866 0.91650 0.91800 1.26064 0.97459 0.98383 0.98857 1.69779 1.47031 1.17382 1.22294 0.85450 0.79350 0.78035 0.79333 1.18132 1.19853 1.15528 1.20898 1.01816 0.92831 0.99463 0.92922 0.92514 0.89086 0.91907 0.92352 0.90409 0.91096 0.83706 0.83777 0.86389 0.74015 0.74958 0.87671 0.87763 0.77187 0.90918 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.05 0.57 6.66 71.98 0.48 1.05 16 3 O -0.41 -7.26 10.33 -148.98 -1.54 -8.80 16 4 C 0.11 1.43 6.06 71.23 0.43 1.86 16 5 C -0.08 -1.44 5.51 -19.88 -0.11 -1.55 16 6 C -0.12 -2.05 9.70 22.29 0.22 -1.84 16 7 C -0.11 -2.10 10.04 22.25 0.22 -1.87 16 8 C -0.14 -3.43 8.66 22.39 0.19 -3.23 16 9 C 0.15 3.61 6.28 38.15 0.24 3.85 16 10 N -0.68 -15.82 5.35 -317.18 -1.70 -17.51 16 11 C 0.71 21.07 8.30 179.05 1.49 22.56 16 12 O -0.61 -21.61 14.03 -3.98 -0.06 -21.67 16 13 N -0.72 -21.59 5.53 -482.31 -2.67 -24.26 16 14 C 0.14 4.42 6.15 85.64 0.53 4.94 16 15 C 0.45 19.09 7.85 87.66 0.69 19.77 16 16 O -0.61 -31.09 15.24 -3.05 -0.05 -31.14 16 17 N -0.58 -26.20 5.09 -306.98 -1.56 -27.76 16 18 C -0.33 -18.70 10.16 84.04 0.85 -17.84 16 19 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 20 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 21 N -0.93 -54.13 13.96 21.66 0.30 -53.82 16 22 Si 0.96 37.90 27.74 68.60 1.90 39.80 16 23 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 26 C -0.13 -2.55 9.62 22.39 0.22 -2.33 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 34 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.12 3.42 6.41 -2.91 -0.02 3.40 16 37 H 0.42 7.30 8.83 -92.71 -0.82 6.48 16 38 H 0.41 12.15 7.46 -92.70 -0.69 11.46 16 39 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.10 3.05 8.14 -2.39 -0.02 3.04 16 41 H 0.39 14.94 5.76 -92.71 -0.53 14.41 16 42 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -76.34 370.25 0.25 -76.09 By element: Atomic # 1 Polarization: 45.61 SS G_CDS: -1.04 Total: 44.57 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 6.65 Total: 24.51 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -5.62 Total: -123.35 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -1.64 Total: -61.61 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.90 Total: 39.80 kcal Total: -76.34 0.25 -76.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562187834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.998 kcal (2) G-P(sol) polarization free energy of solvation -76.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds