Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34814 * 116.99892 * 2 1 4 4 O 1.21540 * 120.00105 * 359.97438 * 3 2 1 5 5 C 1.47144 * 120.00448 * 180.02562 * 3 2 1 6 6 C 1.37997 * 125.91453 * 179.97438 * 5 3 2 7 7 C 1.39428 * 107.44916 * 179.74095 * 6 5 3 8 8 C 1.37941 * 107.47129 * 0.41988 * 7 6 5 9 9 C 1.47328 * 125.88904 * 179.84809 * 8 7 6 10 10 O 1.21615 * 119.99767 * 359.68387 * 9 8 7 11 11 N 1.34771 * 120.00320 * 179.69186 * 9 8 7 12 12 C 1.46507 * 120.00309 * 179.97438 * 11 9 8 13 13 C 1.53036 * 109.45897 * 204.99931 * 12 11 9 14 14 C 1.53191 * 109.31166 * 178.61271 * 13 12 11 15 15 N 1.46926 * 108.89452 * 54.56289 * 14 13 12 16 16 C 1.36934 * 120.63630 * 126.46229 * 15 14 13 17 17 H 1.08000 * 119.99464 * 331.92669 * 16 15 14 18 18 C 1.38810 * 120.00385 * 151.92945 * 16 15 14 19 19 N 1.31619 * 119.99689 * 343.17004 * 18 16 15 20 20 Si 1.86795 * 119.99988 * 163.17171 * 18 16 15 21 21 H 1.48503 * 109.47611 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47271 * 120.00121 * 20 18 16 23 23 H 1.48496 * 109.47355 * 239.99904 * 20 18 16 24 24 C 1.46973 * 118.71425 * 306.64410 * 15 14 13 25 25 C 1.53043 * 109.45897 * 84.92611 * 12 11 9 26 26 N 1.36707 * 108.22538 * 359.57683 * 8 7 6 27 27 H 0.96993 * 125.66335 * 180.28638 * 26 8 7 28 28 H 1.09001 * 109.47079 * 299.99684 * 1 2 3 29 29 H 1.08994 * 109.47406 * 59.99969 * 1 2 3 30 30 H 1.08999 * 109.47081 * 180.02562 * 1 2 3 31 31 H 1.08005 * 126.27592 * 359.96555 * 6 5 3 32 32 H 1.08003 * 126.26300 * 180.29340 * 7 6 5 33 33 H 0.96999 * 119.99854 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.44411 * 324.96570 * 12 11 9 35 35 H 1.09001 * 109.50071 * 58.66060 * 13 12 11 36 36 H 1.09005 * 109.49477 * 298.56396 * 13 12 11 37 37 H 1.09000 * 109.58954 * 174.41929 * 14 13 12 38 38 H 1.08996 * 109.58649 * 294.70243 * 14 13 12 39 39 H 0.97000 * 119.99637 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.46458 * 293.56938 * 24 15 14 41 41 H 1.08992 * 109.71060 * 173.28601 * 24 15 14 42 42 H 1.08995 * 109.49931 * 301.34255 * 25 12 11 43 43 H 1.09003 * 109.49592 * 61.43695 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4020 2.2205 -0.0005 5 6 3.5334 1.2784 -0.0006 6 6 4.2831 2.4369 -0.0011 7 6 5.6270 2.0652 0.0045 8 6 5.6754 0.6867 -0.0013 9 6 6.8986 -0.1345 -0.0015 10 8 7.9905 0.4010 -0.0020 11 7 6.8076 -1.4792 -0.0012 12 6 8.0239 -2.2958 -0.0019 13 6 7.7178 -3.6658 -0.6113 14 6 8.9995 -4.5043 -0.6422 15 7 9.5648 -4.5594 0.7129 16 6 9.8539 -5.7623 1.3000 17 1 9.2958 -6.6452 1.0252 18 6 10.8641 -5.8469 2.2482 19 7 11.7543 -4.8826 2.3491 20 14 10.9602 -7.3292 3.3808 21 1 9.8504 -8.2647 3.0672 22 1 12.2604 -8.0191 3.1839 23 1 10.8461 -6.8820 4.7922 24 6 9.8101 -3.2988 1.4274 25 6 8.5194 -2.4738 1.4351 26 7 4.3927 0.2138 -0.0007 27 1 4.1348 -0.7212 0.0000 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.8993 3.4465 -0.0018 32 1 6.4748 2.7343 0.0100 33 1 5.9367 -1.9063 -0.0005 34 1 8.7939 -1.7994 -0.5926 35 1 7.3428 -3.5369 -1.6266 36 1 6.9657 -4.1729 -0.0068 37 1 8.7678 -5.5135 -0.9827 38 1 9.7195 -4.0463 -1.3202 39 1 12.4604 -4.9419 3.0115 40 1 10.5973 -2.7410 0.9201 41 1 10.1146 -3.5104 2.4523 42 1 8.7149 -1.4964 1.8762 43 1 7.7597 -2.9922 2.0202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590227576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = -56.013574 kcal Electronic energy + Delta-G solvation = -26515.700128 eV Core-core repulsion = 22562.355082 eV Total energy + Delta-G solvation = -3953.345046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89982 -40.42746 -39.35095 -37.34995 -36.88618 -34.62038 -32.40025 -31.53025 -30.70924 -30.03142 -29.40676 -28.03065 -25.40820 -24.20233 -22.53608 -22.31365 -21.50039 -20.69658 -20.27781 -19.77292 -19.00876 -17.74590 -17.08344 -16.89120 -16.76162 -15.90819 -15.32999 -14.94038 -14.70234 -14.36042 -14.25404 -14.05133 -13.80430 -13.57578 -13.42006 -13.18396 -13.07996 -13.00108 -12.64198 -12.62835 -12.44766 -11.57151 -11.30973 -11.24544 -11.18273 -11.01370 -10.78075 -10.49922 -10.28115 -10.20691 -10.10581 -9.83348 -9.61177 -9.50427 -8.97242 -8.70492 -8.48139 -6.73357 -5.82701 -3.26144 0.53363 1.76214 2.08278 2.54149 2.68435 3.05443 3.21537 3.34602 3.42419 3.44252 4.33380 4.45675 4.56067 4.64482 4.73545 4.83881 4.88452 5.07877 5.20378 5.34039 5.37760 5.48137 5.53714 5.71255 5.73060 5.81104 5.98196 6.08741 6.12954 6.19281 6.32115 6.38769 6.50476 6.58082 6.69242 6.72870 6.80448 6.86219 7.23807 7.30945 7.46160 7.63656 7.75978 8.10316 8.40682 9.16567 9.79632 10.36096 11.26024 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.002479 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.142035 B =11293.387463 C =11998.368193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.364 6.364 3 C 0.536 3.464 4 O -0.493 6.493 5 C -0.015 4.015 6 C -0.106 4.106 7 C -0.129 4.129 8 C 0.011 3.989 9 C 0.580 3.420 10 O -0.514 6.514 11 N -0.721 5.721 12 C 0.151 3.849 13 C -0.140 4.140 14 C 0.149 3.851 15 N -0.593 5.593 16 C -0.255 4.255 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.900 5.900 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.173 3.827 25 C -0.147 4.147 26 N -0.510 5.510 27 H 0.425 0.575 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.389 0.611 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.254 0.746 40 H 0.022 0.978 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.398 10.324 -5.793 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.280 6.280 3 C 0.380 3.620 4 O -0.380 6.380 5 C -0.129 4.129 6 C -0.132 4.132 7 C -0.155 4.155 8 C -0.108 4.108 9 C 0.364 3.636 10 O -0.389 6.389 11 N -0.371 5.371 12 C 0.048 3.952 13 C -0.179 4.179 14 C 0.021 3.979 15 N -0.315 5.315 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.544 5.544 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.047 3.953 25 C -0.188 4.188 26 N -0.108 5.108 27 H 0.264 0.736 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.177 0.823 32 H 0.180 0.820 33 H 0.222 0.778 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.722 10.802 -5.686 23.194 hybrid contribution -0.775 -1.347 0.670 1.692 sum -20.497 9.455 -5.017 23.123 Atomic orbital electron populations 1.23327 0.75106 1.04107 1.02918 1.86543 1.24388 1.32535 1.84579 1.19945 0.86876 0.81902 0.73244 1.90900 1.65266 1.35836 1.46025 1.19390 0.86499 0.88449 1.18610 1.21329 0.91915 0.97175 1.02784 1.21333 0.97175 0.92277 1.04694 1.21015 0.83336 0.94924 1.11551 1.17172 0.87003 0.81974 0.77416 1.90872 1.26522 1.72145 1.49355 1.46302 1.10630 1.05551 1.74579 1.21158 0.85126 0.90302 0.98604 1.22357 1.01328 0.95036 0.99227 1.20827 0.91378 0.97229 0.88428 1.44110 1.73699 1.02881 1.10842 1.19200 1.12354 0.87483 1.19461 0.91603 1.25073 0.95147 0.97766 1.01603 1.70039 1.14697 1.33834 1.35858 0.86233 0.77456 0.82285 0.80821 1.20273 1.21671 1.21550 1.20768 0.90336 0.84661 0.99548 1.22583 1.01424 1.00310 0.94438 1.41987 1.05219 1.09037 1.54572 0.73624 0.91522 0.91535 0.87702 0.82291 0.82046 0.77791 0.89520 0.92527 0.91830 0.92263 0.96081 0.93567 0.95984 0.89170 0.92622 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.57 101.05 1.07 1.28 16 2 O -0.36 -3.01 10.58 -40.80 -0.43 -3.44 16 3 C 0.54 5.42 7.95 34.35 0.27 5.69 16 4 O -0.49 -6.02 16.67 -19.29 -0.32 -6.34 16 5 C -0.02 -0.15 7.07 -82.12 -0.58 -0.73 16 6 C -0.11 -1.04 10.60 -39.23 -0.42 -1.45 16 7 C -0.13 -1.39 10.60 -39.25 -0.42 -1.81 16 8 C 0.01 0.13 7.04 -82.10 -0.58 -0.45 16 9 C 0.58 8.13 7.77 -12.57 -0.10 8.03 16 10 O -0.51 -9.23 16.54 5.26 0.09 -9.14 16 11 N -0.72 -9.20 5.07 -54.87 -0.28 -9.48 16 12 C 0.15 2.45 2.42 -67.89 -0.16 2.28 16 13 C -0.14 -2.15 5.55 -26.61 -0.15 -2.30 16 14 C 0.15 2.92 6.51 -3.71 -0.02 2.90 16 15 N -0.59 -14.35 3.00 -172.29 -0.52 -14.86 16 16 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 17 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 18 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 19 N -0.90 -25.91 11.20 55.49 0.62 -25.29 16 20 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.17 4.09 5.30 -3.69 -0.02 4.07 16 25 C -0.15 -2.80 5.65 -26.61 -0.15 -2.95 16 26 N -0.51 -4.57 6.01 -5.91 -0.04 -4.60 16 27 H 0.42 2.77 8.15 -40.82 -0.33 2.44 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.39 3.70 7.70 -40.82 -0.31 3.38 16 34 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -32.97 364.51 -7.86 -40.83 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.97 Total: 2.95 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.48 Total: 7.60 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.21 Total: -54.24 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.67 Total: -18.92 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.97 -7.86 -40.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590227576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.180 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds