Wall clock time and date at job start Fri Apr 10 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34814 * 116.99892 * 2 1 4 4 O 1.21540 * 120.00105 * 359.97438 * 3 2 1 5 5 C 1.47144 * 120.00448 * 180.02562 * 3 2 1 6 6 C 1.37997 * 125.91453 * 179.97438 * 5 3 2 7 7 C 1.39428 * 107.44916 * 179.74095 * 6 5 3 8 8 C 1.37941 * 107.47129 * 0.41988 * 7 6 5 9 9 C 1.47328 * 125.88904 * 179.84809 * 8 7 6 10 10 O 1.21615 * 119.99767 * 359.68387 * 9 8 7 11 11 N 1.34771 * 120.00320 * 179.69186 * 9 8 7 12 12 C 1.46507 * 120.00309 * 179.97438 * 11 9 8 13 13 C 1.53036 * 109.45897 * 204.99931 * 12 11 9 14 14 C 1.53191 * 109.31166 * 178.61271 * 13 12 11 15 15 N 1.46926 * 108.89452 * 54.56289 * 14 13 12 16 16 C 1.36934 * 120.63630 * 126.46229 * 15 14 13 17 17 H 1.08000 * 119.99464 * 331.92669 * 16 15 14 18 18 C 1.38810 * 120.00385 * 151.92945 * 16 15 14 19 19 N 1.31619 * 119.99689 * 343.17004 * 18 16 15 20 20 Si 1.86795 * 119.99988 * 163.17171 * 18 16 15 21 21 H 1.48503 * 109.47611 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47271 * 120.00121 * 20 18 16 23 23 H 1.48496 * 109.47355 * 239.99904 * 20 18 16 24 24 C 1.46973 * 118.71425 * 306.64410 * 15 14 13 25 25 C 1.53043 * 109.45897 * 84.92611 * 12 11 9 26 26 N 1.36707 * 108.22538 * 359.57683 * 8 7 6 27 27 H 0.96993 * 125.66335 * 180.28638 * 26 8 7 28 28 H 1.09001 * 109.47079 * 299.99684 * 1 2 3 29 29 H 1.08994 * 109.47406 * 59.99969 * 1 2 3 30 30 H 1.08999 * 109.47081 * 180.02562 * 1 2 3 31 31 H 1.08005 * 126.27592 * 359.96555 * 6 5 3 32 32 H 1.08003 * 126.26300 * 180.29340 * 7 6 5 33 33 H 0.96999 * 119.99854 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.44411 * 324.96570 * 12 11 9 35 35 H 1.09001 * 109.50071 * 58.66060 * 13 12 11 36 36 H 1.09005 * 109.49477 * 298.56396 * 13 12 11 37 37 H 1.09000 * 109.58954 * 174.41929 * 14 13 12 38 38 H 1.08996 * 109.58649 * 294.70243 * 14 13 12 39 39 H 0.97000 * 119.99637 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.46458 * 293.56938 * 24 15 14 41 41 H 1.08992 * 109.71060 * 173.28601 * 24 15 14 42 42 H 1.08995 * 109.49931 * 301.34255 * 25 12 11 43 43 H 1.09003 * 109.49592 * 61.43695 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4020 2.2205 -0.0005 5 6 3.5334 1.2784 -0.0006 6 6 4.2831 2.4369 -0.0011 7 6 5.6270 2.0652 0.0045 8 6 5.6754 0.6867 -0.0013 9 6 6.8986 -0.1345 -0.0015 10 8 7.9905 0.4010 -0.0020 11 7 6.8076 -1.4792 -0.0012 12 6 8.0239 -2.2958 -0.0019 13 6 7.7178 -3.6658 -0.6113 14 6 8.9995 -4.5043 -0.6422 15 7 9.5648 -4.5594 0.7129 16 6 9.8539 -5.7623 1.3000 17 1 9.2958 -6.6452 1.0252 18 6 10.8641 -5.8469 2.2482 19 7 11.7543 -4.8826 2.3491 20 14 10.9602 -7.3292 3.3808 21 1 9.8504 -8.2647 3.0672 22 1 12.2604 -8.0191 3.1839 23 1 10.8461 -6.8820 4.7922 24 6 9.8101 -3.2988 1.4274 25 6 8.5194 -2.4738 1.4351 26 7 4.3927 0.2138 -0.0007 27 1 4.1348 -0.7212 0.0000 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.8993 3.4465 -0.0018 32 1 6.4748 2.7343 0.0100 33 1 5.9367 -1.9063 -0.0005 34 1 8.7939 -1.7994 -0.5926 35 1 7.3428 -3.5369 -1.6266 36 1 6.9657 -4.1729 -0.0068 37 1 8.7678 -5.5135 -0.9827 38 1 9.7195 -4.0463 -1.3202 39 1 12.4604 -4.9419 3.0115 40 1 10.5973 -2.7410 0.9201 41 1 10.1146 -3.5104 2.4523 42 1 8.7149 -1.4964 1.8762 43 1 7.7597 -2.9922 2.0202 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590227576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:25 Heat of formation + Delta-G solvation = -78.332105 kcal Electronic energy + Delta-G solvation = -26516.667932 eV Core-core repulsion = 22562.355082 eV Total energy + Delta-G solvation = -3954.312850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.72401 -41.25214 -40.48446 -38.87431 -37.61574 -36.13163 -34.05360 -32.43922 -31.97181 -31.53497 -30.75584 -28.62732 -27.05782 -25.31913 -23.94252 -23.78156 -22.59351 -21.59555 -21.39324 -20.91939 -20.12519 -18.87250 -18.44785 -17.82151 -17.57322 -17.25483 -16.70517 -16.36183 -15.84523 -15.45718 -15.34955 -15.24603 -15.09330 -14.85688 -14.72308 -14.34901 -14.15561 -14.05099 -13.86292 -13.83106 -13.19657 -13.09999 -13.03931 -12.68925 -12.59800 -12.15097 -12.03585 -12.00224 -11.89865 -11.86528 -11.57231 -11.49364 -11.16608 -10.60176 -10.26734 -10.19227 -9.58133 -8.71206 -7.87716 -5.33856 -0.30431 0.88477 1.38216 1.46950 1.49037 1.59322 1.77444 1.90803 1.99423 2.18923 2.51485 3.28587 3.58354 3.66869 3.70354 3.85472 4.04624 4.06162 4.13367 4.27760 4.30475 4.33611 4.46375 4.65737 4.67615 4.72006 4.76052 4.83780 4.99670 5.02298 5.05695 5.11210 5.13578 5.29659 5.31535 5.41806 5.46554 5.58771 5.64780 5.70650 6.04839 6.38731 6.43002 6.50930 7.03485 7.13621 7.84546 8.36791 9.19572 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020166 B = 0.002479 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.142035 B =11293.387463 C =11998.368193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.540 3.460 4 O -0.517 6.517 5 C -0.011 4.011 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.000 4.000 9 C 0.583 3.417 10 O -0.559 6.559 11 N -0.705 5.705 12 C 0.162 3.838 13 C -0.122 4.122 14 C 0.141 3.859 15 N -0.610 5.610 16 C -0.259 4.259 17 H 0.074 0.926 18 C -0.055 4.055 19 N -0.938 5.938 20 Si 0.967 3.033 21 H -0.262 1.262 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.181 3.819 25 C -0.132 4.132 26 N -0.494 5.494 27 H 0.437 0.563 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.173 0.827 32 H 0.164 0.836 33 H 0.410 0.590 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.013 0.987 39 H 0.249 0.751 40 H -0.009 1.009 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.574 9.552 -6.467 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.386 3.614 4 O -0.406 6.406 5 C -0.126 4.126 6 C -0.135 4.135 7 C -0.157 4.157 8 C -0.119 4.119 9 C 0.370 3.630 10 O -0.437 6.437 11 N -0.356 5.356 12 C 0.058 3.942 13 C -0.162 4.162 14 C 0.015 3.985 15 N -0.333 5.333 16 C -0.389 4.389 17 H 0.092 0.908 18 C -0.250 4.250 19 N -0.584 5.584 20 Si 0.796 3.204 21 H -0.186 1.186 22 H -0.222 1.222 23 H -0.220 1.220 24 C 0.055 3.945 25 C -0.172 4.172 26 N -0.092 5.092 27 H 0.279 0.721 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.191 0.809 32 H 0.181 0.819 33 H 0.247 0.753 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.031 0.969 39 H 0.058 0.942 40 H 0.009 0.991 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.978 9.980 -6.390 25.853 hybrid contribution 0.138 -1.087 0.820 1.369 sum -22.840 8.893 -5.570 25.135 Atomic orbital electron populations 1.23642 0.73430 1.06113 1.03040 1.86539 1.25992 1.31323 1.83973 1.19920 0.86780 0.82102 0.72632 1.90895 1.65729 1.36745 1.47235 1.19485 0.86703 0.88662 1.17787 1.21522 0.91398 0.98033 1.02507 1.21492 0.97825 0.92263 1.04169 1.20521 0.83120 0.94695 1.13614 1.17425 0.87210 0.82123 0.76233 1.90859 1.28462 1.72970 1.51395 1.45926 1.10489 1.05056 1.74085 1.20765 0.86041 0.91298 0.96120 1.22155 0.99123 0.93246 1.01649 1.21039 0.92889 0.98699 0.85890 1.44358 1.73999 1.02190 1.12789 1.19586 1.11690 0.88520 1.19126 0.90849 1.25863 0.95196 1.00503 1.03411 1.70206 1.15567 1.35991 1.36669 0.85205 0.77432 0.79352 0.78439 1.18582 1.22171 1.21979 1.20477 0.91868 0.85105 0.97064 1.22318 0.99154 0.98918 0.96789 1.41846 1.04114 1.09638 1.53640 0.72133 0.91528 0.91377 0.84789 0.80926 0.81876 0.75343 0.91687 0.88799 0.90428 0.91384 0.96918 0.94195 0.99104 0.92704 0.93306 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.57 113.37 1.20 1.45 16 2 O -0.36 -4.99 10.58 -57.26 -0.61 -5.60 16 3 C 0.54 9.71 7.95 70.16 0.56 10.27 16 4 O -0.52 -11.73 16.67 19.70 0.33 -11.40 16 5 C -0.01 -0.19 7.07 40.65 0.29 0.10 16 6 C -0.11 -1.93 10.60 22.50 0.24 -1.69 16 7 C -0.13 -2.65 10.60 22.49 0.24 -2.42 16 8 C 0.00 0.00 7.04 40.71 0.29 0.29 16 9 C 0.58 15.63 7.77 86.64 0.67 16.30 16 10 O -0.56 -20.12 16.54 -4.08 -0.07 -20.19 16 11 N -0.70 -16.36 5.07 -445.76 -2.26 -18.63 16 12 C 0.16 5.04 2.42 45.02 0.11 5.15 16 13 C -0.12 -3.41 5.55 30.67 0.17 -3.24 16 14 C 0.14 5.36 6.51 86.36 0.56 5.93 16 15 N -0.61 -29.69 3.00 -699.01 -2.10 -31.79 16 16 C -0.26 -13.82 9.58 84.03 0.81 -13.02 16 17 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 18 C -0.05 -3.02 4.92 84.86 0.42 -2.61 16 19 N -0.94 -55.99 11.20 21.65 0.24 -55.75 16 20 Si 0.97 44.27 29.59 68.60 2.03 46.30 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 C 0.18 8.88 5.30 86.35 0.46 9.34 16 25 C -0.13 -5.00 5.65 30.67 0.17 -4.82 16 26 N -0.49 -7.52 6.01 -172.60 -1.04 -8.56 16 27 H 0.44 4.20 8.15 -92.71 -0.76 3.45 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 33 H 0.41 6.27 7.70 -92.71 -0.71 5.56 16 34 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 2.01 8.14 -2.38 -0.02 2.00 16 37 H 0.07 2.45 7.93 -2.39 -0.02 2.44 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H 0.05 3.05 6.07 -2.39 -0.01 3.04 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -73.63 364.51 2.29 -71.34 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -0.42 Total: 13.25 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 6.17 Total: 21.02 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -5.15 Total: -114.72 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.34 Total: -37.18 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.63 2.29 -71.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590227576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.994 kcal (2) G-P(sol) polarization free energy of solvation -73.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds