Wall clock time and date at job start Fri Apr 10 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35677 * 116.99668 * 2 1 4 4 N 1.32270 * 119.68518 * 359.97438 * 3 2 1 5 5 C 1.31942 * 121.64563 * 179.97438 * 4 3 2 6 6 C 1.38091 * 120.83315 * 359.97438 * 5 4 3 7 7 C 1.38777 * 119.28717 * 0.02562 * 6 5 4 8 8 C 1.38426 * 118.48745 * 359.74799 * 7 6 5 9 9 C 1.50699 * 120.44530 * 180.24396 * 8 7 6 10 10 N 1.46508 * 109.47177 * 260.25587 * 9 8 7 11 11 C 1.34769 * 119.99839 * 180.02562 * 10 9 8 12 12 O 1.21582 * 120.00504 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99942 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64409 * 359.68253 * 13 11 10 15 15 C 1.55133 * 104.71799 * 155.82008 * 14 13 11 16 16 C 1.55155 * 101.48530 * 37.29944 * 15 14 13 17 17 O 1.42897 * 110.71994 * 82.69110 * 16 15 14 18 18 C 1.50705 * 110.86883 * 205.89820 * 16 15 14 19 19 H 1.07993 * 120.00094 * 355.06207 * 18 16 15 20 20 C 1.37883 * 119.99504 * 175.06283 * 18 16 15 21 21 N 1.31512 * 120.00138 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99676 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46852 * 90.00085 * 22 20 18 24 24 H 1.48496 * 109.47052 * 209.99967 * 22 20 18 25 25 H 1.48497 * 109.47221 * 330.00435 * 22 20 18 26 26 C 1.47019 * 125.64928 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00280 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00328 * 1 2 3 30 30 H 1.08001 * 119.58081 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.35430 * 179.97438 * 6 5 4 32 32 H 1.08008 * 120.75454 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.46869 * 20.24806 * 9 8 7 34 34 H 1.08993 * 109.47276 * 140.25428 * 9 8 7 35 35 H 0.96997 * 119.99464 * 359.97438 * 10 9 8 36 36 H 1.08995 * 110.37080 * 274.75048 * 14 13 11 37 37 H 1.09007 * 110.36658 * 37.07645 * 14 13 11 38 38 H 1.08997 * 111.19126 * 279.19293 * 15 14 13 39 39 H 1.09003 * 110.90296 * 155.27746 * 15 14 13 40 40 H 0.96701 * 113.99635 * 185.02030 * 17 16 15 41 41 H 0.96996 * 119.99729 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.88065 * 300.43619 * 26 13 11 43 43 H 1.08996 * 109.88274 * 61.44395 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3184 2.3142 -0.0005 5 6 1.8768 3.5097 0.0000 6 6 3.2506 3.6491 0.0016 7 6 4.0483 2.5135 0.0021 8 6 3.4322 1.2739 0.0064 9 6 4.2557 0.0119 0.0127 10 7 4.3287 -0.5305 -1.3463 11 6 5.0178 -1.6642 -1.5833 12 8 5.5793 -2.2366 -0.6694 13 7 5.0844 -2.1634 -2.8335 14 6 4.4484 -1.5777 -4.0275 15 6 5.2907 -2.1021 -5.2201 16 6 5.6188 -3.5456 -4.7555 17 8 4.5344 -4.4293 -5.0471 18 6 6.8922 -4.0384 -5.3933 19 1 7.3954 -3.4329 -6.1325 20 6 7.4148 -5.2625 -5.0330 21 7 6.8023 -5.9996 -4.1324 22 14 8.9928 -5.8737 -5.8240 23 1 10.1569 -5.4193 -5.0217 24 1 8.9772 -7.3576 -5.8773 25 1 9.0987 -5.3299 -7.2018 26 6 5.7985 -3.3855 -3.2311 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8901 30 1 1.2514 4.3902 -0.0009 31 1 3.6995 4.6315 0.0015 32 1 5.1253 2.5951 0.0038 33 1 5.2613 0.2360 0.3688 34 1 3.7917 -0.7215 0.6722 35 1 3.8803 -0.0739 -2.0753 36 1 3.4157 -1.9160 -4.1117 37 1 4.4896 -0.4893 -3.9840 38 1 6.2010 -1.5161 -5.3473 39 1 4.7023 -2.1111 -6.1376 40 1 4.6566 -5.3269 -4.7086 41 1 7.1697 -6.8608 -3.8793 42 1 6.8573 -3.2911 -2.9904 43 1 5.3762 -4.2467 -2.7134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591907976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:00 Heat of formation + Delta-G solvation = -70.206281 kcal Electronic energy + Delta-G solvation = -27246.967146 eV Core-core repulsion = 23293.006658 eV Total energy + Delta-G solvation = -3953.960488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01797 -39.52461 -38.09658 -37.40233 -35.01159 -34.20835 -32.48771 -32.19307 -31.15158 -29.85657 -27.83249 -27.52367 -26.48640 -24.70415 -23.25544 -22.73216 -22.07269 -19.67022 -19.43108 -18.60251 -17.68481 -17.32467 -17.02786 -16.31138 -15.89486 -15.59242 -15.22382 -14.93697 -14.62650 -14.44491 -14.30138 -13.91346 -13.57549 -13.51827 -13.23407 -12.89961 -12.80474 -12.57939 -12.33256 -12.06201 -11.68512 -11.62613 -11.44772 -11.37289 -11.01984 -10.78031 -10.63723 -10.47118 -10.20690 -10.14203 -9.93844 -9.57441 -9.28235 -8.80480 -8.71530 -8.64740 -8.27784 -7.70102 -6.24768 -4.33334 0.73951 0.98534 2.87495 3.14828 3.24092 3.31091 3.33777 3.56693 3.80594 3.98078 4.29585 4.52612 4.55559 4.57948 4.67632 4.95288 5.03003 5.09240 5.12300 5.19144 5.40900 5.42389 5.46235 5.71629 5.76817 5.77563 5.84271 5.99431 6.05339 6.12414 6.14313 6.54496 6.75036 6.77754 6.93170 6.98435 7.04150 7.30827 7.36039 7.52879 7.69588 7.76591 8.07525 8.58053 8.70662 9.18460 9.33001 9.41579 10.83029 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023722 B = 0.002831 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.045504 B = 9888.453500 C =10111.580351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.296 6.296 3 C 0.337 3.663 4 N -0.543 5.543 5 C 0.142 3.858 6 C -0.214 4.214 7 C -0.023 4.023 8 C -0.175 4.175 9 C 0.196 3.804 10 N -0.745 5.745 11 C 0.717 3.283 12 O -0.597 6.597 13 N -0.630 5.630 14 C 0.104 3.896 15 C -0.115 4.115 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.066 0.934 20 C 0.070 3.930 21 N -0.893 5.893 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.124 3.876 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.392 0.608 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.382 0.618 41 H 0.270 0.730 42 H 0.064 0.936 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 18.183 7.254 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.202 6.202 3 C 0.157 3.843 4 N -0.267 5.267 5 C -0.013 4.013 6 C -0.235 4.235 7 C -0.049 4.049 8 C -0.178 4.178 9 C 0.071 3.929 10 N -0.402 5.402 11 C 0.419 3.581 12 O -0.476 6.476 13 N -0.367 5.367 14 C -0.019 4.019 15 C -0.153 4.153 16 C 0.207 3.793 17 O -0.394 6.394 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.531 5.531 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C 0.002 3.998 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.177 0.823 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.225 0.775 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.737 17.738 7.826 22.162 hybrid contribution 1.427 -0.365 -0.360 1.517 sum -9.310 17.373 7.466 21.077 Atomic orbital electron populations 1.22894 0.77126 1.03256 1.02245 1.86366 1.22893 1.23947 1.86993 1.19745 0.88863 0.84913 0.90750 1.67390 1.40783 0.98797 1.19684 1.22458 0.92992 0.93659 0.92233 1.21992 0.94871 0.99824 1.06790 1.21466 1.00960 0.90555 0.91893 1.20018 0.91349 0.96775 1.09682 1.19670 0.98304 0.90554 0.84323 1.45093 1.57982 1.27367 1.09782 1.15471 0.79854 0.80332 0.82434 1.90883 1.51950 1.61827 1.42935 1.47951 1.54819 1.28974 1.04976 1.22260 0.97221 0.96150 0.86292 1.22756 0.99028 0.97345 0.96219 1.19507 0.85827 0.85887 0.88040 1.86103 1.45611 1.25746 1.81920 1.21484 1.08004 1.03811 1.24255 0.91591 1.25075 0.97579 0.96423 0.94218 1.69700 1.40008 1.12622 1.30812 0.86407 0.82891 0.77909 0.79716 1.20437 1.21013 1.19736 1.22845 0.95567 0.83223 0.98201 0.88425 0.92369 0.92245 0.82343 0.84340 0.83786 0.90867 0.90493 0.77465 0.92065 0.92824 0.90504 0.90689 0.76776 0.92016 0.91802 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.30 -3.76 9.73 -18.73 -0.18 -3.94 16 3 C 0.34 4.05 7.47 -17.13 -0.13 3.92 16 4 N -0.54 -5.89 9.22 -13.33 -0.12 -6.01 16 5 C 0.14 1.16 11.18 -17.56 -0.20 0.96 16 6 C -0.21 -1.56 10.11 -39.44 -0.40 -1.96 16 7 C -0.02 -0.20 9.81 -39.31 -0.39 -0.59 16 8 C -0.17 -1.98 5.28 -104.32 -0.55 -2.53 16 9 C 0.20 2.69 5.49 -5.19 -0.03 2.67 16 10 N -0.75 -11.82 5.51 -66.41 -0.37 -12.19 16 11 C 0.72 14.96 8.49 -86.92 -0.74 14.22 16 12 O -0.60 -14.73 16.67 5.29 0.09 -14.64 16 13 N -0.63 -13.39 3.32 -176.10 -0.59 -13.97 16 14 C 0.10 1.87 6.58 -2.41 -0.02 1.85 16 15 C -0.12 -2.31 6.24 -24.46 -0.15 -2.46 16 16 C 0.25 6.04 0.85 -89.94 -0.08 5.96 16 17 O -0.59 -14.80 13.07 -35.23 -0.46 -15.26 16 18 C -0.54 -14.13 8.13 -34.44 -0.28 -14.41 16 19 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 20 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 21 N -0.89 -24.04 10.96 55.43 0.61 -23.43 16 22 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 C 0.12 3.07 5.23 -3.07 -0.02 3.05 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.51 8.10 -51.93 -0.42 0.08 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.07 0.97 8.03 -51.93 -0.42 0.56 16 34 H 0.08 1.17 7.87 -51.93 -0.41 0.76 16 35 H 0.39 5.53 6.94 -40.82 -0.28 5.25 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.78 7.29 -51.93 -0.38 0.41 16 38 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 39 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.38 9.90 7.45 45.56 0.34 10.24 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.06 1.73 7.81 -51.93 -0.41 1.32 16 43 H 0.06 1.71 7.92 -51.93 -0.41 1.30 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -32.20 362.10 -7.90 -40.10 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -5.30 Total: 14.42 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -2.01 Total: 13.88 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.47 Total: -55.61 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.55 Total: -33.85 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.20 -7.90 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591907976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.107 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds