Wall clock time and date at job start Fri Apr 10 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35677 * 116.99668 * 2 1 4 4 N 1.32270 * 119.68518 * 359.97438 * 3 2 1 5 5 C 1.31942 * 121.64563 * 179.97438 * 4 3 2 6 6 C 1.38091 * 120.83315 * 359.97438 * 5 4 3 7 7 C 1.38777 * 119.28717 * 0.02562 * 6 5 4 8 8 C 1.38426 * 118.48745 * 359.74799 * 7 6 5 9 9 C 1.50699 * 120.44530 * 180.24396 * 8 7 6 10 10 N 1.46508 * 109.47177 * 260.25587 * 9 8 7 11 11 C 1.34769 * 119.99839 * 180.02562 * 10 9 8 12 12 O 1.21582 * 120.00504 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99942 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64409 * 359.68253 * 13 11 10 15 15 C 1.55133 * 104.71799 * 155.82008 * 14 13 11 16 16 C 1.55155 * 101.48530 * 37.29944 * 15 14 13 17 17 O 1.42897 * 110.71994 * 82.69110 * 16 15 14 18 18 C 1.50705 * 110.86883 * 205.89820 * 16 15 14 19 19 H 1.07993 * 120.00094 * 355.06207 * 18 16 15 20 20 C 1.37883 * 119.99504 * 175.06283 * 18 16 15 21 21 N 1.31512 * 120.00138 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99676 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46852 * 90.00085 * 22 20 18 24 24 H 1.48496 * 109.47052 * 209.99967 * 22 20 18 25 25 H 1.48497 * 109.47221 * 330.00435 * 22 20 18 26 26 C 1.47019 * 125.64928 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00280 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00328 * 1 2 3 30 30 H 1.08001 * 119.58081 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.35430 * 179.97438 * 6 5 4 32 32 H 1.08008 * 120.75454 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.46869 * 20.24806 * 9 8 7 34 34 H 1.08993 * 109.47276 * 140.25428 * 9 8 7 35 35 H 0.96997 * 119.99464 * 359.97438 * 10 9 8 36 36 H 1.08995 * 110.37080 * 274.75048 * 14 13 11 37 37 H 1.09007 * 110.36658 * 37.07645 * 14 13 11 38 38 H 1.08997 * 111.19126 * 279.19293 * 15 14 13 39 39 H 1.09003 * 110.90296 * 155.27746 * 15 14 13 40 40 H 0.96701 * 113.99635 * 185.02030 * 17 16 15 41 41 H 0.96996 * 119.99729 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.88065 * 300.43619 * 26 13 11 43 43 H 1.08996 * 109.88274 * 61.44395 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3184 2.3142 -0.0005 5 6 1.8768 3.5097 0.0000 6 6 3.2506 3.6491 0.0016 7 6 4.0483 2.5135 0.0021 8 6 3.4322 1.2739 0.0064 9 6 4.2557 0.0119 0.0127 10 7 4.3287 -0.5305 -1.3463 11 6 5.0178 -1.6642 -1.5833 12 8 5.5793 -2.2366 -0.6694 13 7 5.0844 -2.1634 -2.8335 14 6 4.4484 -1.5777 -4.0275 15 6 5.2907 -2.1021 -5.2201 16 6 5.6188 -3.5456 -4.7555 17 8 4.5344 -4.4293 -5.0471 18 6 6.8922 -4.0384 -5.3933 19 1 7.3954 -3.4329 -6.1325 20 6 7.4148 -5.2625 -5.0330 21 7 6.8023 -5.9996 -4.1324 22 14 8.9928 -5.8737 -5.8240 23 1 10.1569 -5.4193 -5.0217 24 1 8.9772 -7.3576 -5.8773 25 1 9.0987 -5.3299 -7.2018 26 6 5.7985 -3.3855 -3.2311 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8901 30 1 1.2514 4.3902 -0.0009 31 1 3.6995 4.6315 0.0015 32 1 5.1253 2.5951 0.0038 33 1 5.2613 0.2360 0.3688 34 1 3.7917 -0.7215 0.6722 35 1 3.8803 -0.0739 -2.0753 36 1 3.4157 -1.9160 -4.1117 37 1 4.4896 -0.4893 -3.9840 38 1 6.2010 -1.5161 -5.3473 39 1 4.7023 -2.1111 -6.1376 40 1 4.6566 -5.3269 -4.7086 41 1 7.1697 -6.8608 -3.8793 42 1 6.8573 -3.2911 -2.9904 43 1 5.3762 -4.2467 -2.7134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591907976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:59 Heat of formation + Delta-G solvation = -96.284067 kcal Electronic energy + Delta-G solvation = -27248.097964 eV Core-core repulsion = 23293.006658 eV Total energy + Delta-G solvation = -3955.091306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82860 -41.13376 -39.17144 -38.85528 -36.28037 -36.06445 -34.22256 -33.47139 -32.09149 -31.40592 -29.58788 -28.34484 -27.73720 -26.41111 -24.25143 -23.97624 -23.05283 -21.45548 -21.05935 -19.43327 -19.23501 -18.90159 -18.13437 -17.53211 -17.11567 -16.79672 -16.72672 -16.46825 -16.12626 -15.63682 -15.32780 -15.11869 -14.88801 -14.76881 -14.67128 -14.29025 -14.07026 -13.91470 -13.69776 -13.49917 -13.25039 -12.98883 -12.83835 -12.53768 -12.49842 -12.33850 -12.28009 -12.18201 -12.09247 -11.41419 -11.16408 -10.85957 -10.66459 -10.64480 -10.29044 -10.24824 -9.48622 -9.39934 -8.24975 -6.41042 0.01026 0.30359 1.42135 1.43916 1.53881 1.71966 2.12937 2.15567 2.38868 2.74804 3.01678 3.14452 3.27829 3.72494 3.79487 3.82399 4.05487 4.07246 4.17317 4.25701 4.37388 4.40477 4.41264 4.53257 4.56227 4.62017 4.72874 4.74190 4.77655 5.05691 5.08963 5.12608 5.23100 5.25473 5.35577 5.43276 5.50262 5.51183 5.75322 6.02863 6.15403 6.23885 6.65873 6.83101 7.03870 7.28176 7.35765 7.54790 8.81203 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023722 B = 0.002831 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.045504 B = 9888.453500 C =10111.580351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.323 6.323 3 C 0.318 3.682 4 N -0.558 5.558 5 C 0.140 3.860 6 C -0.201 4.201 7 C -0.020 4.020 8 C -0.191 4.191 9 C 0.200 3.800 10 N -0.722 5.722 11 C 0.712 3.288 12 O -0.643 6.643 13 N -0.635 5.635 14 C 0.109 3.891 15 C -0.109 4.109 16 C 0.233 3.767 17 O -0.587 6.587 18 C -0.556 4.556 19 H 0.068 0.932 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.264 1.264 26 C 0.143 3.857 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.192 0.808 31 H 0.175 0.825 32 H 0.163 0.837 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.404 0.596 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.375 0.625 41 H 0.269 0.731 42 H 0.030 0.970 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 21.462 6.447 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.230 6.230 3 C 0.139 3.861 4 N -0.282 5.282 5 C -0.015 4.015 6 C -0.220 4.220 7 C -0.046 4.046 8 C -0.194 4.194 9 C 0.076 3.924 10 N -0.378 5.378 11 C 0.414 3.586 12 O -0.525 6.525 13 N -0.372 5.372 14 C -0.013 4.013 15 C -0.147 4.147 16 C 0.193 3.807 17 O -0.395 6.395 18 C -0.595 4.595 19 H 0.087 0.913 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.790 3.210 23 H -0.205 1.205 24 H -0.208 1.208 25 H -0.188 1.188 26 C 0.019 3.981 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.209 0.791 31 H 0.192 0.808 32 H 0.181 0.819 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.224 0.776 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.053 21.085 6.998 24.813 hybrid contribution 1.458 -1.270 -0.053 1.934 sum -9.594 19.815 6.945 23.085 Atomic orbital electron populations 1.23003 0.75998 1.04075 1.02495 1.86321 1.24264 1.25045 1.87373 1.19892 0.89179 0.85122 0.91883 1.67436 1.41161 0.99352 1.20282 1.23147 0.94153 0.93661 0.90584 1.22376 0.94369 1.00796 1.04502 1.21762 1.02162 0.89930 0.90753 1.19837 0.90900 0.96431 1.12248 1.19668 0.98876 0.91352 0.82522 1.44951 1.56212 1.25452 1.11225 1.15689 0.79972 0.81204 0.81698 1.90844 1.53940 1.63432 1.44310 1.47890 1.54854 1.28188 1.06265 1.22406 0.96616 0.98484 0.83798 1.22753 1.00105 0.94230 0.97578 1.19722 0.85373 0.88021 0.87599 1.86094 1.46061 1.25491 1.81853 1.21825 1.08983 1.04190 1.24460 0.91349 1.25842 1.00436 0.96739 0.94653 1.69817 1.41209 1.12767 1.31701 0.85456 0.79190 0.77321 0.79072 1.20471 1.20786 1.18827 1.22344 0.93595 0.83653 0.98518 0.87398 0.91962 0.92064 0.79098 0.80788 0.81920 0.90478 0.92691 0.76052 0.91507 0.88440 0.89595 0.89156 0.77616 0.92132 0.95118 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.38 113.37 1.18 1.90 16 2 O -0.32 -8.23 9.73 -89.95 -0.87 -9.11 16 3 C 0.32 7.34 7.47 84.78 0.63 7.98 16 4 N -0.56 -11.01 9.22 -308.94 -2.85 -13.86 16 5 C 0.14 1.78 11.18 84.64 0.95 2.72 16 6 C -0.20 -2.07 10.11 22.36 0.23 -1.85 16 7 C -0.02 -0.29 9.81 22.44 0.22 -0.07 16 8 C -0.19 -4.06 5.28 -19.67 -0.10 -4.17 16 9 C 0.20 5.47 5.49 85.63 0.47 5.94 16 10 N -0.72 -22.45 5.51 -482.29 -2.66 -25.10 16 11 C 0.71 30.10 8.49 179.05 1.52 31.62 16 12 O -0.64 -32.94 16.67 -3.97 -0.07 -33.01 16 13 N -0.64 -27.12 3.32 -829.32 -2.76 -29.88 16 14 C 0.11 3.69 6.58 86.93 0.57 4.26 16 15 C -0.11 -4.18 6.24 32.06 0.20 -3.98 16 16 C 0.23 11.47 0.85 -10.35 -0.01 11.46 16 17 O -0.59 -30.16 13.07 -148.98 -1.95 -32.11 16 18 C -0.56 -29.48 8.13 25.60 0.21 -29.27 16 19 H 0.07 3.50 7.78 -2.91 -0.02 3.48 16 20 C 0.02 1.29 5.28 84.66 0.45 1.73 16 21 N -0.92 -50.85 10.96 21.45 0.24 -50.61 16 22 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 26 C 0.14 7.35 5.23 86.73 0.45 7.80 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.06 8.10 -2.39 -0.02 1.05 16 29 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 30 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 32 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.08 2.04 8.03 -2.38 -0.02 2.02 16 34 H 0.05 1.75 7.87 -2.39 -0.02 1.73 16 35 H 0.40 10.64 6.94 -92.71 -0.64 10.00 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 2.48 7.29 -2.38 -0.02 2.46 16 38 H 0.09 3.13 8.04 -2.39 -0.02 3.11 16 39 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.37 20.15 7.45 -74.06 -0.55 19.60 16 41 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.03 1.74 7.81 -2.39 -0.02 1.72 16 43 H 0.03 1.51 7.92 -2.39 -0.02 1.49 16 Total: -1.00 -72.95 362.10 -2.08 -75.02 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -0.15 Total: 38.00 kcal Atomic # 6 Polarization: 29.13 SS G_CDS: 6.96 Total: 36.09 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -8.03 Total: -119.45 kcal Atomic # 8 Polarization: -71.33 SS G_CDS: -2.89 Total: -74.22 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -72.95 -2.08 -75.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591907976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.261 kcal (2) G-P(sol) polarization free energy of solvation -72.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds