Wall clock time and date at job start Fri Apr 10 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47107 * 2 1 4 4 C 1.34750 * 116.99987 * 180.02562 * 3 2 1 5 5 O 1.21512 * 119.99939 * 359.97438 * 4 3 2 6 6 C 1.47415 * 120.00181 * 179.97438 * 4 3 2 7 7 C 1.40185 * 120.87045 * 6.07324 * 6 4 3 8 8 N 1.31930 * 119.00506 * 179.70798 * 7 6 4 9 9 C 1.32696 * 120.89806 * 0.54224 * 8 7 6 10 10 N 1.37911 * 119.03404 * 179.71553 * 9 8 7 11 11 C 1.47902 * 110.99960 * 239.60566 * 10 9 8 12 12 C 1.54002 * 107.05641 * 145.84461 * 11 10 9 13 13 C 1.54596 * 105.13880 * 358.77805 * 12 11 10 14 14 O 1.42894 * 110.72385 * 96.40034 * 13 12 11 15 15 C 1.50700 * 110.72044 * 219.68566 * 13 12 11 16 16 H 1.08005 * 120.00227 * 359.97438 * 15 13 12 17 17 C 1.37883 * 119.99986 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99706 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99767 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47394 * 59.99896 * 19 17 15 21 21 H 1.48509 * 109.46708 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47114 * 299.99230 * 19 17 15 23 23 C 1.48536 * 111.00315 * 357.00294 * 10 9 8 24 24 N 1.32665 * 121.93249 * 359.44116 * 9 8 7 25 25 C 1.31961 * 120.90078 * 0.27334 * 24 9 8 26 26 C 1.50698 * 120.49464 * 179.97438 * 25 24 9 27 27 H 1.09001 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46879 * 300.00019 * 1 2 3 29 29 H 1.08998 * 109.47379 * 60.00076 * 1 2 3 30 30 H 1.09007 * 109.46879 * 239.99981 * 2 1 3 31 31 H 1.08998 * 109.47379 * 119.99924 * 2 1 3 32 32 H 1.08004 * 120.50241 * 359.97438 * 7 6 4 33 33 H 1.08998 * 109.91823 * 26.49155 * 11 10 9 34 34 H 1.08998 * 109.91608 * 265.19327 * 11 10 9 35 35 H 1.09004 * 110.30796 * 117.69149 * 12 11 10 36 36 H 1.08993 * 110.30558 * 239.85970 * 12 11 10 37 37 H 0.96708 * 113.99914 * 179.97438 * 14 13 12 38 38 H 0.97003 * 119.99492 * 180.02562 * 18 17 15 39 39 H 1.09004 * 110.66493 * 318.71915 * 23 10 9 40 40 H 1.09002 * 110.66492 * 81.67739 * 23 10 9 41 41 H 1.09008 * 109.47016 * 96.34224 * 26 25 24 42 42 H 1.08997 * 109.47016 * 216.33477 * 26 25 24 43 43 H 1.09000 * 109.47468 * 336.34440 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0901 0.5819 -0.0005 6 6 3.9134 2.9077 -0.0011 7 6 3.0827 4.0298 0.1261 8 7 3.6268 5.2317 0.1269 9 6 4.9385 5.3860 -0.0013 10 7 5.4657 6.6603 -0.0014 11 6 6.1883 6.9349 -1.2623 12 6 5.9819 8.4263 -1.5857 13 6 5.0778 8.9638 -0.4527 14 8 5.8619 9.5792 0.5711 15 6 4.0570 9.9293 -0.9977 16 1 4.0367 10.1546 -2.0538 17 6 3.1497 10.5258 -0.1480 18 7 3.1748 10.2517 1.1380 19 14 1.8850 11.7231 -0.8235 20 1 1.0360 11.0324 -1.8273 21 1 1.0329 12.2212 0.2861 22 1 2.5802 12.8671 -1.4662 23 6 4.3900 7.6815 0.0794 24 7 5.7582 4.3501 -0.1240 25 6 5.2935 3.1150 -0.1284 26 6 6.2329 1.9450 -0.2689 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0138 3.9120 0.2264 33 1 5.7805 6.3209 -2.0653 34 1 7.2505 6.7262 -1.1345 35 1 6.9384 8.9492 -1.5866 36 1 5.4872 8.5393 -2.5503 37 1 5.3418 9.9333 1.3055 38 1 2.5362 10.6711 1.7358 39 1 3.5483 7.4046 -0.5553 40 1 4.0644 7.8164 1.1109 41 1 6.4717 1.5502 0.7187 42 1 5.7574 1.1670 -0.8660 43 1 7.1491 2.2717 -0.7608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:07 Heat of formation + Delta-G solvation = -66.385974 kcal Electronic energy + Delta-G solvation = -27315.710965 eV Core-core repulsion = 23361.916138 eV Total energy + Delta-G solvation = -3953.794827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39345 -40.22417 -38.38252 -36.83401 -35.02294 -34.25274 -32.52883 -32.12440 -31.73683 -29.77624 -28.80658 -27.69503 -25.24134 -24.40446 -23.56531 -22.56366 -21.69836 -20.57955 -19.55782 -18.26255 -17.53328 -17.24991 -16.81383 -16.63180 -16.46745 -15.59305 -14.96743 -14.76087 -14.35898 -14.13169 -13.96721 -13.87762 -13.35843 -13.28627 -13.06475 -12.88333 -12.51894 -12.39524 -12.16383 -12.02116 -11.94759 -11.82454 -11.52577 -11.45216 -10.99700 -10.91811 -10.77270 -10.60959 -10.50556 -10.43686 -10.28177 -10.16315 -9.69652 -9.39169 -9.06288 -8.65655 -8.21548 -8.06869 -6.28605 -4.37299 0.44585 1.20959 2.41738 2.43932 3.21544 3.27146 3.29171 3.50466 3.80789 4.15121 4.25876 4.41253 4.54225 4.64533 4.70746 4.88781 4.94800 4.97600 5.01118 5.38148 5.41126 5.48015 5.50692 5.54261 5.58735 5.67134 5.71119 5.80903 5.92710 6.04144 6.11408 6.26718 6.37810 6.50335 6.71683 6.76016 6.92695 6.98292 7.27731 7.36982 7.57439 7.61333 7.75191 8.01278 8.29313 8.65145 9.32405 9.51765 10.78858 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015874 B = 0.003341 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.522252 B = 8379.552135 C = 9735.770112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.355 6.355 4 C 0.531 3.469 5 O -0.509 6.509 6 C -0.299 4.299 7 C 0.239 3.761 8 N -0.551 5.551 9 C 0.529 3.471 10 N -0.443 5.443 11 C 0.066 3.934 12 C -0.120 4.120 13 C 0.254 3.746 14 O -0.581 6.581 15 C -0.539 4.539 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.045 3.955 24 N -0.541 5.541 25 C 0.266 3.734 26 C -0.110 4.110 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.178 0.822 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.384 0.616 38 H 0.271 0.729 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -17.795 -2.652 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.273 6.273 4 C 0.376 3.624 5 O -0.399 6.399 6 C -0.307 4.307 7 C 0.068 3.932 8 N -0.270 5.270 9 C 0.176 3.824 10 N -0.160 5.160 11 C -0.059 4.059 12 C -0.158 4.158 13 C 0.213 3.787 14 O -0.391 6.391 15 C -0.577 4.577 16 H 0.083 0.917 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.081 4.081 24 N -0.261 5.261 25 C 0.116 3.884 26 C -0.167 4.167 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.195 0.805 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.236 0.764 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.344 -17.109 -2.429 17.332 hybrid contribution -2.103 -0.318 -0.188 2.136 sum -3.448 -17.427 -2.617 17.957 Atomic orbital electron populations 1.21821 0.92539 1.02969 1.03768 1.23027 0.95352 0.79883 1.02642 1.86549 1.23771 1.32524 1.84410 1.20503 0.80452 0.88996 0.72459 1.90781 1.59804 1.42479 1.46848 1.20399 0.96193 0.92617 1.21506 1.23534 1.00698 0.85776 0.83188 1.68691 1.12542 1.25553 1.20237 1.21864 0.84318 0.91913 0.84266 1.60935 1.24508 0.98267 1.32263 1.22764 0.98878 0.97854 0.86416 1.22520 1.01472 0.92097 0.99691 1.19390 0.86817 0.88185 0.84270 1.86113 1.38923 1.78362 1.35670 1.21543 1.15105 1.26106 0.94962 0.91702 1.25049 0.97061 0.96078 0.94868 1.69573 1.37513 1.43394 1.02876 0.86465 0.80808 0.81052 0.78586 1.20062 1.21055 1.20023 1.24190 0.90549 0.89145 1.04170 1.68160 1.38712 0.98108 1.21072 1.21761 0.90440 0.92817 0.83407 1.21075 0.97829 0.93552 1.04263 0.90231 0.91324 0.91338 0.91156 0.91140 0.80488 0.93776 0.89807 0.90749 0.90664 0.76445 0.91916 0.91164 0.88779 0.89199 0.88101 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.54 6.20 37.16 0.23 0.77 16 3 O -0.36 -4.01 9.58 -40.63 -0.39 -4.40 16 4 C 0.53 6.92 7.84 34.47 0.27 7.20 16 5 O -0.51 -7.05 13.31 -19.28 -0.26 -7.30 16 6 C -0.30 -4.33 5.90 -104.72 -0.62 -4.94 16 7 C 0.24 3.61 10.89 -16.78 -0.18 3.42 16 8 N -0.55 -10.37 8.43 -13.64 -0.12 -10.49 16 9 C 0.53 10.46 6.87 -323.04 -2.22 8.25 16 10 N -0.44 -9.44 5.34 -171.47 -0.92 -10.36 16 11 C 0.07 1.26 6.38 -2.75 -0.02 1.24 16 12 C -0.12 -2.47 6.26 -25.37 -0.16 -2.63 16 13 C 0.25 6.19 0.96 -89.91 -0.09 6.10 16 14 O -0.58 -15.09 13.11 -35.23 -0.46 -15.55 16 15 C -0.54 -13.94 8.22 -34.44 -0.28 -14.23 16 16 H 0.06 1.65 7.55 -52.48 -0.40 1.25 16 17 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 18 N -0.89 -23.34 10.63 55.43 0.59 -22.75 16 19 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.04 1.05 4.51 -1.90 -0.01 1.04 16 24 N -0.54 -9.73 10.04 -9.88 -0.10 -9.83 16 25 C 0.27 4.08 6.87 -81.82 -0.56 3.52 16 26 C -0.11 -1.34 8.98 36.00 0.32 -1.02 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.18 2.12 7.72 -52.48 -0.41 1.72 16 33 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.07 1.49 8.08 -51.93 -0.42 1.07 16 36 H 0.07 1.46 7.67 -51.93 -0.40 1.06 16 37 H 0.38 10.17 6.98 45.56 0.32 10.49 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.07 1.70 7.13 -51.93 -0.37 1.33 16 40 H 0.09 2.42 7.67 -51.93 -0.40 2.02 16 41 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.10 1.20 5.95 -51.93 -0.31 0.89 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -28.95 356.70 -9.61 -38.56 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.30 Total: 11.70 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -3.02 Total: 9.94 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.54 Total: -53.42 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -1.11 Total: -27.24 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.95 -9.61 -38.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.823 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds