Wall clock time and date at job start Fri Apr 10 2020 18:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47107 * 2 1 4 4 C 1.34750 * 116.99987 * 180.02562 * 3 2 1 5 5 O 1.21512 * 119.99939 * 359.97438 * 4 3 2 6 6 C 1.47415 * 120.00181 * 179.97438 * 4 3 2 7 7 C 1.40185 * 120.87045 * 6.07324 * 6 4 3 8 8 N 1.31930 * 119.00506 * 179.70798 * 7 6 4 9 9 C 1.32696 * 120.89806 * 0.54224 * 8 7 6 10 10 N 1.37911 * 119.03404 * 179.71553 * 9 8 7 11 11 C 1.47902 * 110.99960 * 239.60566 * 10 9 8 12 12 C 1.54002 * 107.05641 * 145.84461 * 11 10 9 13 13 C 1.54596 * 105.13880 * 358.77805 * 12 11 10 14 14 O 1.42894 * 110.72385 * 96.40034 * 13 12 11 15 15 C 1.50700 * 110.72044 * 219.68566 * 13 12 11 16 16 H 1.08005 * 120.00227 * 359.97438 * 15 13 12 17 17 C 1.37883 * 119.99986 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99706 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99767 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47394 * 59.99896 * 19 17 15 21 21 H 1.48509 * 109.46708 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47114 * 299.99230 * 19 17 15 23 23 C 1.48536 * 111.00315 * 357.00294 * 10 9 8 24 24 N 1.32665 * 121.93249 * 359.44116 * 9 8 7 25 25 C 1.31961 * 120.90078 * 0.27334 * 24 9 8 26 26 C 1.50698 * 120.49464 * 179.97438 * 25 24 9 27 27 H 1.09001 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46879 * 300.00019 * 1 2 3 29 29 H 1.08998 * 109.47379 * 60.00076 * 1 2 3 30 30 H 1.09007 * 109.46879 * 239.99981 * 2 1 3 31 31 H 1.08998 * 109.47379 * 119.99924 * 2 1 3 32 32 H 1.08004 * 120.50241 * 359.97438 * 7 6 4 33 33 H 1.08998 * 109.91823 * 26.49155 * 11 10 9 34 34 H 1.08998 * 109.91608 * 265.19327 * 11 10 9 35 35 H 1.09004 * 110.30796 * 117.69149 * 12 11 10 36 36 H 1.08993 * 110.30558 * 239.85970 * 12 11 10 37 37 H 0.96708 * 113.99914 * 179.97438 * 14 13 12 38 38 H 0.97003 * 119.99492 * 180.02562 * 18 17 15 39 39 H 1.09004 * 110.66493 * 318.71915 * 23 10 9 40 40 H 1.09002 * 110.66492 * 81.67739 * 23 10 9 41 41 H 1.09008 * 109.47016 * 96.34224 * 26 25 24 42 42 H 1.08997 * 109.47016 * 216.33477 * 26 25 24 43 43 H 1.09000 * 109.47468 * 336.34440 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 -0.0005 5 8 4.0901 0.5819 -0.0005 6 6 3.9134 2.9077 -0.0011 7 6 3.0827 4.0298 0.1261 8 7 3.6268 5.2317 0.1269 9 6 4.9385 5.3860 -0.0013 10 7 5.4657 6.6603 -0.0014 11 6 6.1883 6.9349 -1.2623 12 6 5.9819 8.4263 -1.5857 13 6 5.0778 8.9638 -0.4527 14 8 5.8619 9.5792 0.5711 15 6 4.0570 9.9293 -0.9977 16 1 4.0367 10.1546 -2.0538 17 6 3.1497 10.5258 -0.1480 18 7 3.1748 10.2517 1.1380 19 14 1.8850 11.7231 -0.8235 20 1 1.0360 11.0324 -1.8273 21 1 1.0329 12.2212 0.2861 22 1 2.5802 12.8671 -1.4662 23 6 4.3900 7.6815 0.0794 24 7 5.7582 4.3501 -0.1240 25 6 5.2935 3.1150 -0.1284 26 6 6.2329 1.9450 -0.2689 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0138 3.9120 0.2264 33 1 5.7805 6.3209 -2.0653 34 1 7.2505 6.7262 -1.1345 35 1 6.9384 8.9492 -1.5866 36 1 5.4872 8.5393 -2.5503 37 1 5.3418 9.9333 1.3055 38 1 2.5362 10.6711 1.7358 39 1 3.5483 7.4046 -0.5553 40 1 4.0644 7.8164 1.1109 41 1 6.4717 1.5502 0.7187 42 1 5.7574 1.1670 -0.8660 43 1 7.1491 2.2717 -0.7608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:06 Heat of formation + Delta-G solvation = -84.480087 kcal Electronic energy + Delta-G solvation = -27316.495584 eV Core-core repulsion = 23361.916138 eV Total energy + Delta-G solvation = -3954.579447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.68100 -41.32680 -39.96020 -37.83330 -36.76209 -35.53985 -34.13511 -33.80033 -32.54139 -31.28467 -30.06022 -29.34236 -26.96425 -25.76895 -24.46974 -23.84780 -22.78580 -21.98920 -21.31339 -19.44572 -19.27332 -18.51527 -18.09865 -17.74090 -17.62752 -17.07897 -16.91075 -16.15692 -15.68478 -15.61444 -15.10018 -14.92400 -14.78683 -14.57754 -14.16004 -14.12581 -13.67534 -13.63220 -13.54014 -13.38600 -13.36457 -12.93269 -12.80831 -12.76573 -12.54922 -12.46998 -12.31300 -12.29259 -12.15846 -11.77944 -11.51534 -11.33728 -11.19138 -11.06457 -10.60399 -10.40311 -10.17418 -9.58977 -8.22778 -6.38843 -0.81510 -0.03695 1.30276 1.45292 1.45928 1.49845 1.53905 2.10162 2.40757 2.50855 2.87818 3.04146 3.27157 3.45259 3.55525 3.81464 3.87242 3.92595 4.06062 4.09777 4.14572 4.20284 4.38951 4.43174 4.59464 4.63916 4.71959 4.75453 4.82288 4.82641 4.96230 5.00700 5.04522 5.10606 5.23498 5.29664 5.42231 5.42826 5.46771 5.60617 5.78520 6.08140 6.12190 6.59424 6.67097 6.92597 7.33507 7.46882 8.83221 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015874 B = 0.003341 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.522252 B = 8379.552135 C = 9735.770112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.357 6.357 4 C 0.537 3.463 5 O -0.515 6.515 6 C -0.288 4.288 7 C 0.238 3.762 8 N -0.579 5.579 9 C 0.512 3.488 10 N -0.459 5.459 11 C 0.072 3.928 12 C -0.115 4.115 13 C 0.236 3.764 14 O -0.590 6.590 15 C -0.560 4.560 16 H 0.064 0.936 17 C 0.031 3.969 18 N -0.913 5.913 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.273 1.273 23 C 0.070 3.930 24 N -0.550 5.550 25 C 0.256 3.744 26 C -0.103 4.103 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.206 0.794 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.377 0.623 38 H 0.271 0.729 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -19.661 -3.490 20.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.273 6.273 4 C 0.382 3.618 5 O -0.405 6.405 6 C -0.296 4.296 7 C 0.069 3.931 8 N -0.299 5.299 9 C 0.158 3.842 10 N -0.177 5.177 11 C -0.053 4.053 12 C -0.153 4.153 13 C 0.196 3.804 14 O -0.399 6.399 15 C -0.598 4.598 16 H 0.083 0.917 17 C -0.170 4.170 18 N -0.552 5.552 19 Si 0.789 3.211 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.056 4.056 24 N -0.270 5.270 25 C 0.108 3.892 26 C -0.160 4.160 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.223 0.777 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.227 0.773 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.117 -19.033 -3.277 19.429 hybrid contribution -1.926 0.069 0.083 1.929 sum -4.043 -18.964 -3.193 19.652 Atomic orbital electron populations 1.21850 0.90676 1.04439 1.03659 1.23366 0.96785 0.78348 1.03149 1.86544 1.22414 1.34540 1.83828 1.20165 0.81148 0.88075 0.72397 1.90781 1.60224 1.42430 1.47100 1.20569 0.96011 0.93450 1.19611 1.23984 1.01995 0.84889 0.82203 1.68648 1.12485 1.27514 1.21297 1.21772 0.84975 0.91706 0.85729 1.60921 1.24119 0.98776 1.33862 1.22758 0.99549 0.96779 0.86190 1.22488 1.00984 0.93060 0.98746 1.19661 0.87614 0.88289 0.84859 1.86102 1.39343 1.78611 1.35860 1.21827 1.15931 1.26960 0.95122 0.91737 1.25760 0.98674 0.97488 0.95128 1.69676 1.37942 1.43916 1.03672 0.85528 0.78597 0.79016 0.77985 1.19592 1.20770 1.19791 1.23627 0.90688 0.89777 1.01546 1.68156 1.38660 0.98617 1.21570 1.22325 0.91558 0.92706 0.82646 1.21128 0.97577 0.92258 1.04987 0.87964 0.91451 0.91409 0.90599 0.90728 0.77724 0.92699 0.88408 0.90311 0.89677 0.77269 0.91924 0.92576 0.92006 0.88181 0.87502 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.29 71.98 0.74 -0.69 16 2 C 0.06 0.81 6.20 71.98 0.45 1.26 16 3 O -0.36 -7.22 9.58 -56.60 -0.54 -7.77 16 4 C 0.54 12.87 7.84 70.24 0.55 13.42 16 5 O -0.51 -13.01 13.31 19.80 0.26 -12.75 16 6 C -0.29 -7.92 5.90 -19.92 -0.12 -8.04 16 7 C 0.24 6.96 10.89 85.15 0.93 7.89 16 8 N -0.58 -21.92 8.43 -197.07 -1.66 -23.58 16 9 C 0.51 20.30 6.87 261.57 1.80 22.09 16 10 N -0.46 -19.83 5.34 -696.42 -3.72 -23.55 16 11 C 0.07 2.73 6.38 86.45 0.55 3.28 16 12 C -0.11 -4.73 6.26 31.48 0.20 -4.53 16 13 C 0.24 11.73 0.96 -10.34 -0.01 11.72 16 14 O -0.59 -31.48 13.11 -148.98 -1.95 -33.43 16 15 C -0.56 -29.37 8.22 25.60 0.21 -29.16 16 16 H 0.06 3.29 7.55 -2.91 -0.02 3.27 16 17 C 0.03 1.58 5.28 84.66 0.45 2.03 16 18 N -0.91 -48.68 10.63 21.45 0.23 -48.45 16 19 Si 0.96 41.34 29.54 68.60 2.03 43.36 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 C 0.07 3.39 4.51 86.65 0.39 3.78 16 24 N -0.55 -19.40 10.04 -185.19 -1.86 -21.26 16 25 C 0.26 7.51 6.87 43.00 0.30 7.81 16 26 C -0.10 -2.28 8.98 71.24 0.64 -1.65 16 27 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.21 4.59 7.72 -2.91 -0.02 4.57 16 33 H 0.05 1.92 7.75 -2.39 -0.02 1.91 16 34 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.08 3.12 8.08 -2.38 -0.02 3.10 16 36 H 0.08 3.27 7.67 -2.39 -0.02 3.25 16 37 H 0.38 20.75 6.98 -74.05 -0.52 20.23 16 38 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 39 H 0.06 2.80 7.13 -2.38 -0.02 2.79 16 40 H 0.06 3.34 7.67 -2.39 -0.02 3.32 16 41 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.11 2.29 5.95 -2.39 -0.01 2.27 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -62.43 356.70 0.37 -62.05 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.53 Total: 36.15 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 7.07 Total: 29.21 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -7.01 Total: -116.83 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -2.23 Total: -53.94 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Total: -62.43 0.37 -62.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.427 kcal (2) G-P(sol) polarization free energy of solvation -62.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds