Wall clock time and date at job start Fri Apr 10 2020 18:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35744 * 116.99916 * 2 1 4 4 C 1.39283 * 120.84336 * 359.97438 * 3 2 1 5 5 C 1.37955 * 119.09139 * 179.72118 * 4 3 2 6 6 N 1.31975 * 120.82115 * 0.28570 * 5 4 3 7 7 C 1.31947 * 121.86481 * 359.97438 * 6 5 4 8 8 C 1.37992 * 120.82444 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.45654 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.46719 * 259.99488 * 9 8 7 11 11 C 1.34785 * 119.99720 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99869 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00010 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64992 * 0.03160 * 13 11 10 15 15 C 1.54909 * 104.83366 * 204.08692 * 14 13 11 16 16 C 1.55153 * 101.58009 * 322.99075 * 15 14 13 17 17 O 1.42897 * 110.71908 * 277.13295 * 16 15 14 18 18 C 1.50702 * 110.71880 * 154.04112 * 16 15 14 19 19 H 1.07999 * 120.00269 * 359.97438 * 18 16 15 20 20 C 1.37877 * 119.99927 * 179.97438 * 18 16 15 21 21 N 1.31517 * 120.00119 * 0.02562 * 20 18 16 22 22 Si 1.86807 * 120.00054 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47011 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46876 * 120.00437 * 22 20 18 25 25 H 1.48500 * 109.47142 * 240.00504 * 22 20 18 26 26 C 1.47022 * 125.64711 * 179.71450 * 13 11 10 27 27 H 1.08997 * 109.47058 * 60.00172 * 1 2 3 28 28 H 1.09000 * 109.46790 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47266 * 299.99658 * 1 2 3 30 30 H 1.08002 * 120.45862 * 0.02562 * 4 3 2 31 31 H 1.07991 * 119.58834 * 180.25559 * 5 4 3 32 32 H 1.07999 * 119.58901 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46890 * 19.99341 * 9 8 7 34 34 H 1.09001 * 109.46961 * 139.99572 * 9 8 7 35 35 H 0.96995 * 120.00825 * 0.02562 * 10 9 8 36 36 H 1.09007 * 110.36395 * 322.92858 * 14 13 11 37 37 H 1.09000 * 110.36974 * 85.25007 * 14 13 11 38 38 H 1.09000 * 111.00307 * 81.06349 * 15 14 13 39 39 H 1.08994 * 111.00738 * 204.87141 * 15 14 13 40 40 H 0.96702 * 114.00200 * 179.97438 * 17 16 15 41 41 H 0.96995 * 119.99927 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.88461 * 298.40265 * 26 13 11 43 43 H 1.08998 * 109.87986 * 59.56557 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9674 3.5981 0.0054 6 7 3.2863 3.6458 0.0058 7 6 4.0229 2.5511 0.0011 8 6 3.4345 1.3029 -0.0049 9 6 4.2838 0.0581 -0.0107 10 7 4.3609 -0.4740 -1.3735 11 6 5.0729 -1.5913 -1.6214 12 8 5.6507 -2.1578 -0.7139 13 7 5.1434 -2.0811 -2.8750 14 6 4.4945 -1.4977 -4.0632 15 6 4.3424 -2.6798 -5.0527 16 6 5.6544 -3.4685 -4.7996 17 8 6.7353 -2.9040 -5.5446 18 6 5.4758 -4.9248 -5.1435 19 1 4.5242 -5.2804 -5.5101 20 6 6.5272 -5.8034 -4.9901 21 7 7.6859 -5.3706 -4.5431 22 14 6.3057 -7.6088 -5.4156 23 1 4.9184 -7.8381 -5.8930 24 1 7.2652 -7.9868 -6.4840 25 1 6.5574 -8.4364 -4.2086 26 6 5.8857 -3.2821 -3.2852 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2243 2.3566 -0.0005 31 1 1.4006 4.5173 0.0092 32 1 5.0998 2.6330 0.0013 33 1 5.2863 0.3006 0.3419 34 1 3.8382 -0.6888 0.6463 35 1 3.9003 -0.0219 -2.0975 36 1 3.5164 -1.0938 -3.8014 37 1 5.1237 -0.7197 -4.4956 38 1 3.4695 -3.2847 -4.8075 39 1 4.2919 -2.3241 -6.0817 40 1 7.5788 -3.3604 -5.4211 41 1 8.4255 -5.9887 -4.4348 42 1 6.9485 -3.1477 -3.0842 43 1 5.5112 -4.1517 -2.7451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592025941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:28 Heat of formation + Delta-G solvation = -71.534282 kcal Electronic energy + Delta-G solvation = -27222.327349 eV Core-core repulsion = 23268.309275 eV Total energy + Delta-G solvation = -3954.018074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07590 -39.53855 -38.53136 -37.40600 -34.92606 -34.23934 -32.13993 -31.85184 -31.55532 -29.89520 -28.02446 -27.80917 -26.49916 -24.72059 -23.24163 -22.73380 -22.06938 -19.67254 -19.43935 -18.70826 -17.63718 -17.44974 -17.07796 -16.30719 -15.85674 -15.35349 -15.32571 -15.15804 -14.92577 -14.57748 -14.37008 -14.11426 -13.80123 -13.58070 -13.22285 -12.89447 -12.83088 -12.63168 -12.44067 -12.05453 -11.95102 -11.61875 -11.45079 -11.40971 -11.05641 -10.78428 -10.62705 -10.46467 -10.14249 -9.86870 -9.70967 -9.47170 -9.32160 -9.10270 -8.78779 -8.65268 -8.28580 -7.72027 -6.27350 -4.35722 0.68587 0.99340 2.76218 3.13652 3.22013 3.30198 3.33499 3.57140 3.78688 4.09242 4.27807 4.28115 4.44636 4.54824 4.61809 4.73805 4.75312 4.97409 5.00513 5.10821 5.22003 5.34694 5.41072 5.56933 5.71370 5.75597 5.85099 5.89980 6.05480 6.13455 6.22298 6.53126 6.74372 6.76239 6.82128 6.90734 7.02751 7.28674 7.35300 7.65431 7.69138 7.76006 8.04130 8.56431 8.68323 9.16758 9.33231 9.46361 10.80533 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022458 B = 0.002852 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.482026 B = 9813.743749 C =10088.217336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.185 3.815 4 C -0.267 4.267 5 C 0.139 3.861 6 N -0.510 5.510 7 C 0.153 3.847 8 C -0.189 4.189 9 C 0.197 3.803 10 N -0.745 5.745 11 C 0.717 3.283 12 O -0.597 6.597 13 N -0.629 5.629 14 C 0.104 3.896 15 C -0.116 4.116 16 C 0.249 3.751 17 O -0.587 6.587 18 C -0.536 4.536 19 H 0.067 0.933 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.904 3.096 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.121 3.879 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.392 0.608 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.386 0.614 41 H 0.270 0.730 42 H 0.061 0.939 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.067 15.186 7.738 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.130 3.870 4 C -0.288 4.288 5 C -0.017 4.017 6 N -0.222 5.222 7 C -0.003 4.003 8 C -0.193 4.193 9 C 0.072 3.928 10 N -0.402 5.402 11 C 0.419 3.581 12 O -0.476 6.476 13 N -0.366 5.366 14 C -0.019 4.019 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.397 6.397 18 C -0.574 4.574 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.001 4.001 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.158 0.842 31 H 0.175 0.825 32 H 0.183 0.817 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.225 0.775 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.238 0.762 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.434 15.682 8.352 22.275 hybrid contribution -0.643 -1.808 -0.277 1.938 sum -14.077 13.875 8.075 21.351 Atomic orbital electron populations 1.23182 0.77651 1.04725 1.01499 1.86195 1.21886 1.25773 1.86998 1.19268 0.91915 0.84885 0.90886 1.22238 1.01628 0.93131 1.11758 1.22613 0.90365 0.96988 0.91783 1.67801 1.07047 1.31916 1.15389 1.22711 1.00564 0.85932 0.91083 1.20454 0.91259 0.97584 1.09982 1.19632 0.98180 0.90842 0.84159 1.45099 1.56463 1.28887 1.09790 1.15478 0.79884 0.80338 0.82399 1.90884 1.51471 1.61701 1.43565 1.47914 1.53672 1.30133 1.04881 1.22217 0.95587 0.97293 0.86805 1.22725 0.99069 0.95537 0.98075 1.19491 0.83598 0.91071 0.85051 1.86067 1.22184 1.60243 1.71203 1.21553 0.98559 0.92296 1.45021 0.91487 1.25083 0.95033 0.99675 0.93532 1.69586 1.02405 1.36068 1.45364 0.86338 0.78382 0.83960 0.78154 1.19620 1.20750 1.20752 1.22886 0.95217 0.83568 0.98450 0.92230 0.87620 0.92362 0.84238 0.82469 0.81732 0.90668 0.90621 0.77452 0.92829 0.92050 0.90639 0.90624 0.76182 0.91954 0.92027 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.15 16 2 O -0.30 -3.17 9.86 -18.94 -0.19 -3.35 16 3 C 0.19 1.91 6.70 -38.82 -0.26 1.65 16 4 C -0.27 -2.15 9.11 -39.30 -0.36 -2.51 16 5 C 0.14 1.17 11.17 -17.59 -0.20 0.97 16 6 N -0.51 -5.40 10.36 -13.33 -0.14 -5.53 16 7 C 0.15 1.59 10.82 -17.59 -0.19 1.40 16 8 C -0.19 -2.10 5.28 -104.34 -0.55 -2.65 16 9 C 0.20 2.65 5.53 -5.20 -0.03 2.62 16 10 N -0.75 -11.63 5.51 -66.41 -0.37 -11.99 16 11 C 0.72 14.82 8.49 -86.91 -0.74 14.08 16 12 O -0.60 -14.61 16.67 5.29 0.09 -14.52 16 13 N -0.63 -13.27 3.33 -176.23 -0.59 -13.86 16 14 C 0.10 1.86 6.56 -2.53 -0.02 1.84 16 15 C -0.12 -2.32 6.23 -24.58 -0.15 -2.47 16 16 C 0.25 6.05 0.86 -89.93 -0.08 5.98 16 17 O -0.59 -14.93 13.07 -35.23 -0.46 -15.40 16 18 C -0.54 -14.05 8.12 -34.44 -0.28 -14.33 16 19 H 0.07 1.73 7.76 -52.49 -0.41 1.32 16 20 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 21 N -0.89 -23.97 10.97 55.43 0.61 -23.36 16 22 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.12 2.99 5.54 -3.06 -0.02 2.97 16 27 H 0.06 0.30 7.71 -51.93 -0.40 -0.10 16 28 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 30 H 0.14 0.75 6.47 -52.49 -0.34 0.41 16 31 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.17 1.43 8.04 -52.49 -0.42 1.01 16 33 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 34 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 35 H 0.39 5.42 6.94 -40.82 -0.28 5.14 16 36 H 0.05 0.78 7.30 -51.93 -0.38 0.40 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.45 8.03 -51.93 -0.42 1.04 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.39 10.15 6.98 45.56 0.32 10.47 16 41 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.06 1.66 8.07 -51.93 -0.42 1.24 16 43 H 0.06 1.69 7.82 -51.93 -0.41 1.28 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -32.33 359.71 -7.82 -40.15 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -5.21 Total: 14.54 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -1.97 Total: 12.42 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.48 Total: -54.75 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.56 Total: -33.27 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.33 -7.82 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592025941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.386 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds