Wall clock time and date at job start Fri Apr 10 2020 18:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35744 * 116.99916 * 2 1 4 4 C 1.39283 * 120.84336 * 359.97438 * 3 2 1 5 5 C 1.37955 * 119.09139 * 179.72118 * 4 3 2 6 6 N 1.31975 * 120.82115 * 0.28570 * 5 4 3 7 7 C 1.31947 * 121.86481 * 359.97438 * 6 5 4 8 8 C 1.37992 * 120.82444 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.45654 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.46719 * 259.99488 * 9 8 7 11 11 C 1.34785 * 119.99720 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99869 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00010 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64992 * 0.03160 * 13 11 10 15 15 C 1.54909 * 104.83366 * 204.08692 * 14 13 11 16 16 C 1.55153 * 101.58009 * 322.99075 * 15 14 13 17 17 O 1.42897 * 110.71908 * 277.13295 * 16 15 14 18 18 C 1.50702 * 110.71880 * 154.04112 * 16 15 14 19 19 H 1.07999 * 120.00269 * 359.97438 * 18 16 15 20 20 C 1.37877 * 119.99927 * 179.97438 * 18 16 15 21 21 N 1.31517 * 120.00119 * 0.02562 * 20 18 16 22 22 Si 1.86807 * 120.00054 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47011 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46876 * 120.00437 * 22 20 18 25 25 H 1.48500 * 109.47142 * 240.00504 * 22 20 18 26 26 C 1.47022 * 125.64711 * 179.71450 * 13 11 10 27 27 H 1.08997 * 109.47058 * 60.00172 * 1 2 3 28 28 H 1.09000 * 109.46790 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47266 * 299.99658 * 1 2 3 30 30 H 1.08002 * 120.45862 * 0.02562 * 4 3 2 31 31 H 1.07991 * 119.58834 * 180.25559 * 5 4 3 32 32 H 1.07999 * 119.58901 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46890 * 19.99341 * 9 8 7 34 34 H 1.09001 * 109.46961 * 139.99572 * 9 8 7 35 35 H 0.96995 * 120.00825 * 0.02562 * 10 9 8 36 36 H 1.09007 * 110.36395 * 322.92858 * 14 13 11 37 37 H 1.09000 * 110.36974 * 85.25007 * 14 13 11 38 38 H 1.09000 * 111.00307 * 81.06349 * 15 14 13 39 39 H 1.08994 * 111.00738 * 204.87141 * 15 14 13 40 40 H 0.96702 * 114.00200 * 179.97438 * 17 16 15 41 41 H 0.96995 * 119.99927 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.88461 * 298.40265 * 26 13 11 43 43 H 1.08998 * 109.87986 * 59.56557 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 -0.0005 5 6 1.9674 3.5981 0.0054 6 7 3.2863 3.6458 0.0058 7 6 4.0229 2.5511 0.0011 8 6 3.4345 1.3029 -0.0049 9 6 4.2838 0.0581 -0.0107 10 7 4.3609 -0.4740 -1.3735 11 6 5.0729 -1.5913 -1.6214 12 8 5.6507 -2.1578 -0.7139 13 7 5.1434 -2.0811 -2.8750 14 6 4.4945 -1.4977 -4.0632 15 6 4.3424 -2.6798 -5.0527 16 6 5.6544 -3.4685 -4.7996 17 8 6.7353 -2.9040 -5.5446 18 6 5.4758 -4.9248 -5.1435 19 1 4.5242 -5.2804 -5.5101 20 6 6.5272 -5.8034 -4.9901 21 7 7.6859 -5.3706 -4.5431 22 14 6.3057 -7.6088 -5.4156 23 1 4.9184 -7.8381 -5.8930 24 1 7.2652 -7.9868 -6.4840 25 1 6.5574 -8.4364 -4.2086 26 6 5.8857 -3.2821 -3.2852 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2243 2.3566 -0.0005 31 1 1.4006 4.5173 0.0092 32 1 5.0998 2.6330 0.0013 33 1 5.2863 0.3006 0.3419 34 1 3.8382 -0.6888 0.6463 35 1 3.9003 -0.0219 -2.0975 36 1 3.5164 -1.0938 -3.8014 37 1 5.1237 -0.7197 -4.4956 38 1 3.4695 -3.2847 -4.8075 39 1 4.2919 -2.3241 -6.0817 40 1 7.5788 -3.3604 -5.4211 41 1 8.4255 -5.9887 -4.4348 42 1 6.9485 -3.1477 -3.0842 43 1 5.5112 -4.1517 -2.7451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592025941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:27 Heat of formation + Delta-G solvation = -96.687405 kcal Electronic energy + Delta-G solvation = -27223.418070 eV Core-core repulsion = 23268.309275 eV Total energy + Delta-G solvation = -3955.108796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84919 -41.13535 -39.24657 -39.12767 -36.21711 -36.09209 -34.16286 -32.96719 -32.23725 -31.51743 -29.62729 -28.53506 -27.78732 -26.41819 -24.24957 -23.91669 -23.05254 -21.44291 -21.06325 -19.49092 -19.21876 -18.89920 -18.18711 -17.53246 -17.02197 -16.78097 -16.69774 -16.31957 -16.05639 -15.91713 -15.41466 -15.19616 -15.07956 -14.78901 -14.70717 -14.48814 -14.18332 -13.99580 -13.68688 -13.48163 -13.27089 -13.03434 -12.87351 -12.54742 -12.50247 -12.30915 -12.25131 -12.12945 -12.09625 -11.39944 -11.20299 -10.64469 -10.58497 -10.31100 -10.26225 -10.17911 -9.87525 -9.40796 -8.26640 -6.42490 -0.03584 0.27657 1.40700 1.43811 1.54708 1.71360 2.13053 2.15939 2.38096 2.74713 2.99824 3.14323 3.39518 3.61519 3.77641 3.80258 3.87923 4.07868 4.14731 4.20099 4.32619 4.36179 4.36805 4.43060 4.56935 4.66361 4.70949 4.71398 4.72666 4.89532 5.03048 5.04953 5.12424 5.23678 5.36067 5.43093 5.48731 5.54444 5.76164 6.00645 6.13573 6.20091 6.64435 6.98070 7.03851 7.29562 7.39050 7.54397 8.79913 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022458 B = 0.002852 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.482026 B = 9813.743749 C =10088.217336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.177 3.823 4 C -0.257 4.257 5 C 0.140 3.860 6 N -0.531 5.531 7 C 0.152 3.848 8 C -0.203 4.203 9 C 0.201 3.799 10 N -0.722 5.722 11 C 0.712 3.288 12 O -0.643 6.643 13 N -0.634 5.634 14 C 0.109 3.891 15 C -0.110 4.110 16 C 0.234 3.766 17 O -0.589 6.589 18 C -0.555 4.555 19 H 0.069 0.931 20 C 0.023 3.977 21 N -0.918 5.918 22 Si 0.966 3.034 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.284 1.284 26 C 0.139 3.861 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.171 0.829 31 H 0.190 0.810 32 H 0.173 0.827 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.404 0.596 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.378 0.622 41 H 0.271 0.729 42 H 0.026 0.974 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.803 16.841 7.236 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.123 3.877 4 C -0.278 4.278 5 C -0.016 4.016 6 N -0.243 5.243 7 C -0.005 4.005 8 C -0.206 4.206 9 C 0.077 3.923 10 N -0.378 5.378 11 C 0.414 3.586 12 O -0.525 6.525 13 N -0.371 5.371 14 C -0.013 4.013 15 C -0.148 4.148 16 C 0.193 3.807 17 O -0.399 6.399 18 C -0.594 4.594 19 H 0.087 0.913 20 C -0.177 4.177 21 N -0.557 5.557 22 Si 0.791 3.209 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.210 1.210 26 C 0.015 3.985 27 H 0.094 0.906 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.188 0.812 31 H 0.207 0.793 32 H 0.190 0.810 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.240 0.760 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.229 0.771 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.231 17.399 7.832 25.050 hybrid contribution 0.134 -2.263 -0.067 2.268 sum -16.097 15.137 7.764 23.421 Atomic orbital electron populations 1.23455 0.75620 1.05710 1.03103 1.86164 1.24141 1.26280 1.87006 1.19436 0.91769 0.85692 0.90833 1.22518 1.03046 0.91940 1.10268 1.23203 0.89846 0.98465 0.90098 1.67859 1.08309 1.31828 1.16307 1.22825 1.01146 0.85710 0.90771 1.20214 0.91617 0.96450 1.12364 1.19616 0.98685 0.91603 0.82440 1.44948 1.54723 1.26944 1.11218 1.15691 0.80031 0.81187 0.81657 1.90846 1.53427 1.63327 1.44927 1.47851 1.53690 1.29411 1.06116 1.22363 0.97545 0.96443 0.84911 1.22717 0.96641 0.95756 0.99644 1.19706 0.85113 0.91417 0.84427 1.86056 1.22146 1.60233 1.71416 1.21879 0.98722 0.93596 1.45168 0.91321 1.25850 0.94852 1.03555 0.93443 1.69690 1.02959 1.37199 1.45891 0.85387 0.78630 0.79201 0.77695 1.18788 1.20233 1.21046 1.22399 0.93315 0.84033 0.98771 0.90649 0.87139 0.90630 0.81210 0.79321 0.81002 0.90792 0.92244 0.75993 0.88628 0.91206 0.89850 0.89084 0.77088 0.91955 0.95570 0.95152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.84 113.37 1.12 1.27 16 2 O -0.33 -6.33 9.86 -90.69 -0.89 -7.22 16 3 C 0.18 3.29 6.70 22.76 0.15 3.44 16 4 C -0.26 -3.28 9.11 22.45 0.20 -3.08 16 5 C 0.14 1.89 11.17 84.60 0.95 2.84 16 6 N -0.53 -10.09 10.36 -196.09 -2.03 -12.12 16 7 C 0.15 2.94 10.82 84.62 0.92 3.86 16 8 C -0.20 -4.27 5.28 -19.68 -0.10 -4.37 16 9 C 0.20 5.40 5.53 85.63 0.47 5.87 16 10 N -0.72 -22.05 5.51 -482.29 -2.66 -24.70 16 11 C 0.71 29.78 8.49 179.05 1.52 31.30 16 12 O -0.64 -32.65 16.67 -3.99 -0.07 -32.72 16 13 N -0.63 -26.84 3.33 -829.73 -2.76 -29.60 16 14 C 0.11 3.67 6.56 86.86 0.57 4.24 16 15 C -0.11 -4.21 6.23 31.98 0.20 -4.01 16 16 C 0.23 11.50 0.86 -10.35 -0.01 11.49 16 17 O -0.59 -30.40 13.07 -148.98 -1.95 -32.35 16 18 C -0.56 -29.36 8.12 25.60 0.21 -29.15 16 19 H 0.07 3.52 7.76 -2.91 -0.02 3.49 16 20 C 0.02 1.24 5.28 84.65 0.45 1.69 16 21 N -0.92 -50.56 10.97 21.45 0.24 -50.33 16 22 Si 0.97 42.36 29.54 68.60 2.03 44.39 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 C 0.14 7.11 5.54 86.73 0.48 7.59 16 27 H 0.07 0.51 7.71 -2.39 -0.02 0.49 16 28 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.48 7.71 -2.39 -0.02 0.47 16 30 H 0.17 1.06 6.47 -2.91 -0.02 1.04 16 31 H 0.19 1.23 8.06 -2.92 -0.02 1.21 16 32 H 0.17 2.86 8.04 -2.91 -0.02 2.84 16 33 H 0.07 1.99 8.02 -2.39 -0.02 1.98 16 34 H 0.06 1.80 7.92 -2.39 -0.02 1.78 16 35 H 0.40 10.37 6.94 -92.71 -0.64 9.73 16 36 H 0.10 2.44 7.30 -2.38 -0.02 2.42 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.08 3.05 8.03 -2.39 -0.02 3.03 16 39 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.38 20.56 6.98 -74.06 -0.52 20.04 16 41 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 43 H 0.03 1.71 7.82 -2.39 -0.02 1.69 16 Total: -1.00 -72.46 359.71 -1.08 -73.54 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.11 Total: 38.14 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 7.12 Total: 32.97 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -7.21 Total: -116.76 kcal Atomic # 8 Polarization: -69.38 SS G_CDS: -2.91 Total: -72.29 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -72.46 -1.08 -73.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592025941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.145 kcal (2) G-P(sol) polarization free energy of solvation -72.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds