Wall clock time and date at job start Fri Apr 10 2020 18:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35915 * 116.99614 * 2 1 4 4 C 1.39132 * 120.47637 * 0.21110 * 3 2 1 5 5 C 1.38535 * 118.37315 * 180.26572 * 4 3 2 6 6 C 1.38251 * 119.22266 * 359.74788 * 5 4 3 7 7 N 1.31841 * 120.88650 * 0.02562 * 6 5 4 8 8 C 1.31849 * 121.78198 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.65800 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47419 * 90.00239 * 9 8 7 11 11 C 1.34776 * 120.00365 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99916 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00125 * 179.71924 * 11 10 9 14 14 C 1.47432 * 125.64754 * 359.96732 * 13 11 10 15 15 C 1.55138 * 104.71922 * 155.81631 * 14 13 11 16 16 C 1.55153 * 101.48593 * 37.29696 * 15 14 13 17 17 O 1.42903 * 110.72008 * 82.69665 * 16 15 14 18 18 C 1.50700 * 110.87145 * 205.89550 * 16 15 14 19 19 H 1.08005 * 119.99933 * 118.66926 * 18 16 15 20 20 C 1.37877 * 120.00183 * 298.67646 * 18 16 15 21 21 N 1.31510 * 120.00157 * 183.38902 * 20 18 16 22 22 Si 1.86796 * 119.99842 * 3.38246 * 20 18 16 23 23 H 1.48505 * 109.47183 * 84.83938 * 22 20 18 24 24 H 1.48496 * 109.47107 * 204.83712 * 22 20 18 25 25 H 1.48501 * 109.47322 * 324.83896 * 22 20 18 26 26 C 1.47023 * 125.65054 * 180.27788 * 13 11 10 27 27 H 1.08990 * 109.47081 * 59.99670 * 1 2 3 28 28 H 1.09000 * 109.46668 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46663 * 299.99834 * 1 2 3 30 30 H 1.08004 * 120.81591 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.38911 * 179.77007 * 5 4 3 32 32 H 1.08001 * 119.55753 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47524 * 329.99696 * 9 8 7 34 34 H 1.09006 * 109.47199 * 209.99719 * 9 8 7 35 35 H 0.97005 * 120.00152 * 359.97438 * 10 9 8 36 36 H 1.08992 * 110.36956 * 274.74284 * 14 13 11 37 37 H 1.09001 * 110.36358 * 37.07584 * 14 13 11 38 38 H 1.09004 * 111.18918 * 279.19277 * 15 14 13 39 39 H 1.09002 * 110.90060 * 155.27952 * 15 14 13 40 40 H 0.96692 * 113.99762 * 185.02513 * 17 16 15 41 41 H 0.97003 * 120.00526 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.88046 * 300.43992 * 26 13 11 43 43 H 1.08996 * 109.88520 * 61.44730 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2979 2.3841 0.0044 5 6 1.9716 3.5946 -0.0014 6 6 3.3541 3.5976 -0.0061 7 7 4.0334 2.4676 -0.0055 8 6 3.4306 1.2950 0.0000 9 6 4.2543 0.0331 -0.0002 10 7 4.5269 -0.3724 1.3809 11 6 5.2518 -1.4816 1.6270 12 8 5.6799 -2.1456 0.7027 13 7 5.5073 -1.8515 2.8975 14 6 5.0580 -1.1382 4.1070 15 6 5.0411 -2.2197 5.2191 16 6 6.2906 -3.0621 4.8498 17 8 7.4785 -2.4569 5.3645 18 6 6.1534 -4.4756 5.3538 19 1 6.1510 -5.3000 4.6560 20 6 6.0307 -4.7166 6.7058 21 7 5.9779 -5.9529 7.1513 22 14 5.9395 -3.2872 7.9048 23 1 4.5359 -2.8123 8.0033 24 1 6.4063 -3.7324 9.2423 25 1 6.8038 -2.1802 7.4221 26 6 6.2858 -3.0296 3.3069 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 0.2184 2.3519 0.0083 31 1 1.4233 4.5251 -0.0020 32 1 3.8849 4.5382 -0.0110 33 1 5.1960 0.2140 -0.5185 34 1 3.7055 -0.7590 -0.5098 35 1 4.1857 0.1575 2.1183 36 1 5.7578 -0.3418 4.3598 37 1 4.0574 -0.7322 3.9581 38 1 4.1345 -2.8228 5.1685 39 1 5.1525 -1.7664 6.2041 40 1 8.2942 -2.9017 5.0968 41 1 5.8920 -6.1225 8.1025 42 1 5.8197 -3.9352 2.9186 43 1 7.3061 -2.9482 2.9323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592029871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:32 Heat of formation + Delta-G solvation = -55.248558 kcal Electronic energy + Delta-G solvation = -27215.246044 eV Core-core repulsion = 23261.934172 eV Total energy + Delta-G solvation = -3953.311872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.15828 -39.75748 -38.52182 -37.69805 -34.88050 -34.46298 -32.50963 -32.39139 -31.30072 -30.07450 -28.35606 -27.89097 -26.85099 -24.81934 -23.27256 -22.67170 -22.22037 -19.99104 -19.53309 -18.56543 -18.02285 -17.51926 -17.33838 -16.49845 -16.28367 -15.70715 -15.39001 -14.87594 -14.83842 -14.74214 -14.33160 -14.18763 -13.88083 -13.68646 -13.31656 -13.20217 -12.92612 -12.73114 -12.50290 -12.30106 -12.06605 -11.87318 -11.76786 -11.55979 -11.30534 -11.09512 -10.55367 -10.27205 -10.22085 -10.06032 -9.94864 -9.69743 -9.00221 -8.91209 -8.79070 -8.71853 -8.47272 -7.97016 -6.19643 -4.31210 0.61510 0.85619 2.76595 2.92884 3.29416 3.42049 3.46941 3.60911 3.61570 3.92395 4.18935 4.29196 4.38438 4.43001 4.56080 4.71349 4.73240 4.85478 5.07017 5.09891 5.13163 5.18806 5.36280 5.38238 5.59272 5.63785 5.71390 5.78526 5.82767 5.89683 6.04192 6.15434 6.51080 6.60765 6.63884 6.66369 6.72655 6.77682 7.15408 7.38508 7.54322 7.61005 8.21647 8.36235 8.76572 8.92902 8.97716 9.43488 10.90857 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.002984 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.106598 B = 9382.563773 C = 9477.586912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.098 3.902 4 C -0.169 4.169 5 C -0.126 4.126 6 C 0.059 3.941 7 N -0.430 5.430 8 C 0.084 3.916 9 C 0.202 3.798 10 N -0.740 5.740 11 C 0.723 3.277 12 O -0.596 6.596 13 N -0.627 5.627 14 C 0.103 3.897 15 C -0.124 4.124 16 C 0.216 3.784 17 O -0.573 6.573 18 C -0.549 4.549 19 H 0.079 0.921 20 C 0.088 3.912 21 N -0.888 5.888 22 Si 0.876 3.124 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.228 1.228 26 C 0.116 3.884 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.393 0.607 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.366 0.634 41 H 0.267 0.733 42 H 0.072 0.928 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.280 19.681 -12.722 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.210 6.210 3 C 0.049 3.951 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.099 4.099 7 N -0.140 5.140 8 C -0.056 4.056 9 C 0.077 3.923 10 N -0.397 5.397 11 C 0.425 3.575 12 O -0.475 6.475 13 N -0.365 5.365 14 C -0.020 4.020 15 C -0.162 4.162 16 C 0.175 3.825 17 O -0.380 6.380 18 C -0.587 4.587 19 H 0.097 0.903 20 C -0.117 4.117 21 N -0.524 5.524 22 Si 0.704 3.296 23 H -0.211 1.211 24 H -0.228 1.228 25 H -0.151 1.151 26 C -0.007 4.007 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.178 0.822 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.227 0.773 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.213 0.787 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.431 19.300 -13.104 25.978 hybrid contribution -1.310 0.748 0.870 1.741 sum -12.742 20.048 -12.234 26.720 Atomic orbital electron populations 1.23167 0.77931 1.04751 1.01266 1.86227 1.21649 1.25417 1.87754 1.19985 0.93144 0.85438 0.96504 1.21738 1.00960 0.92066 1.04791 1.22056 0.95789 0.98323 0.98422 1.22701 0.91447 0.96458 0.99289 1.67578 1.40016 0.97460 1.08902 1.20750 0.88202 0.94234 1.02441 1.19699 0.98655 0.90371 0.83582 1.44942 1.58843 1.28180 1.07755 1.15343 0.79164 0.80791 0.82234 1.90890 1.57936 1.55965 1.42671 1.47647 1.56467 1.29229 1.03118 1.22330 0.98059 0.95948 0.85653 1.23101 0.99898 0.96248 0.96942 1.19988 0.83110 0.92359 0.86999 1.86489 1.16260 1.58853 1.76382 1.21201 1.53558 0.90356 0.93550 0.90271 1.24949 0.92584 0.95738 0.98408 1.69929 1.47915 1.19597 1.14941 0.87069 0.78836 0.84579 0.79130 1.21056 1.22797 1.15071 1.22656 0.94494 0.86364 0.97210 0.92528 0.87572 0.92424 0.84084 0.84315 0.82195 0.89928 0.89697 0.77293 0.91716 0.92328 0.89358 0.90788 0.78711 0.92367 0.90957 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.14 16 2 O -0.30 -3.07 9.54 -19.47 -0.19 -3.26 16 3 C 0.10 1.00 6.67 -39.08 -0.26 0.74 16 4 C -0.17 -1.27 9.14 -39.14 -0.36 -1.63 16 5 C -0.13 -0.84 10.11 -39.47 -0.40 -1.24 16 6 C 0.06 0.49 11.18 -17.54 -0.20 0.30 16 7 N -0.43 -4.98 10.27 -9.35 -0.10 -5.08 16 8 C 0.08 0.99 6.16 -82.41 -0.51 0.48 16 9 C 0.20 2.80 5.75 -5.20 -0.03 2.77 16 10 N -0.74 -11.39 5.51 -66.42 -0.37 -11.76 16 11 C 0.72 13.99 8.49 -86.92 -0.74 13.26 16 12 O -0.60 -13.50 16.67 5.29 0.09 -13.41 16 13 N -0.63 -12.18 3.32 -176.09 -0.59 -12.77 16 14 C 0.10 1.78 6.58 -2.40 -0.02 1.77 16 15 C -0.12 -2.53 4.83 -24.46 -0.12 -2.65 16 16 C 0.22 4.86 0.67 -89.94 -0.06 4.80 16 17 O -0.57 -12.53 10.44 -35.23 -0.37 -12.90 16 18 C -0.55 -14.72 8.82 -34.44 -0.30 -15.03 16 19 H 0.08 2.32 7.82 -52.48 -0.41 1.91 16 20 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 21 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 22 Si 0.88 21.09 23.89 -169.99 -4.06 17.03 16 23 H -0.28 -6.61 7.08 56.52 0.40 -6.21 16 24 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.23 -5.35 5.50 56.52 0.31 -5.04 16 26 C 0.12 2.47 6.21 -3.06 -0.02 2.45 16 27 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 28 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.28 7.69 -51.93 -0.40 -0.12 16 30 H 0.14 0.69 6.45 -52.48 -0.34 0.35 16 31 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.22 7.51 -51.93 -0.39 0.83 16 35 H 0.39 5.43 6.94 -40.82 -0.28 5.14 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.84 7.29 -51.93 -0.38 0.47 16 38 H 0.09 1.83 8.05 -51.93 -0.42 1.41 16 39 H 0.07 1.53 5.00 -51.93 -0.26 1.27 16 40 H 0.37 7.01 9.08 45.56 0.41 7.43 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 1.65 7.66 -51.93 -0.40 1.26 16 43 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -34.71 351.30 -6.64 -41.34 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.02 Total: 11.55 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -2.11 Total: 9.52 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.27 Total: -55.17 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.47 Total: -29.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.06 Total: 17.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.71 -6.64 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592029871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.904 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds