Wall clock time and date at job start Fri Apr 10 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34835 * 119.86784 * 2 1 4 4 O 1.21785 * 120.31046 * 359.97438 * 3 2 1 5 5 C 1.41575 * 119.38434 * 179.74208 * 3 2 1 6 6 C 1.35021 * 119.11480 * 0.52240 * 5 3 2 7 7 N 1.36833 * 119.68269 * 359.73869 * 6 5 3 8 8 C 1.46501 * 119.69006 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.47256 * 270.02497 * 8 7 6 10 10 O 1.21287 * 119.99419 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00034 * 179.97438 * 9 8 7 12 12 C 1.46930 * 120.63187 * 359.72126 * 11 9 8 13 13 C 1.53621 * 108.54276 * 126.36790 * 12 11 9 14 14 C 1.53042 * 109.24150 * 54.85356 * 13 12 11 15 15 C 1.53033 * 109.54045 * 298.50783 * 14 13 12 16 16 H 1.08997 * 109.49898 * 301.41929 * 15 14 13 17 17 C 1.50703 * 109.49876 * 181.31760 * 15 14 13 18 18 H 1.07997 * 119.99629 * 0.16459 * 17 15 14 19 19 C 1.37871 * 119.99858 * 180.16426 * 17 15 14 20 20 N 1.31510 * 120.00525 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99802 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47280 * 89.99922 * 21 19 17 23 23 H 1.48503 * 109.47053 * 209.99904 * 21 19 17 24 24 H 1.48502 * 109.46904 * 329.99834 * 21 19 17 25 25 C 1.46926 * 120.62786 * 179.97438 * 11 9 8 26 26 C 1.34538 * 120.62188 * 0.02562 * 7 6 5 27 27 O 1.21583 * 119.53586 * 180.02562 * 26 7 6 28 28 H 1.09002 * 109.47391 * 269.73140 * 1 2 3 29 29 H 1.09001 * 109.46813 * 149.73196 * 1 2 3 30 30 H 1.09004 * 109.47041 * 29.73323 * 1 2 3 31 31 H 1.08001 * 120.44540 * 180.24116 * 5 3 2 32 32 H 1.08000 * 120.16061 * 179.71873 * 6 5 3 33 33 H 1.09004 * 109.47056 * 30.02115 * 8 7 6 34 34 H 1.09003 * 109.47305 * 150.02268 * 8 7 6 35 35 H 1.08995 * 109.58158 * 246.20077 * 12 11 9 36 36 H 1.09000 * 109.58344 * 6.62221 * 12 11 9 37 37 H 1.09001 * 109.63219 * 294.86155 * 13 12 11 38 38 H 1.08997 * 109.45321 * 174.74042 * 13 12 11 39 39 H 1.09003 * 109.45531 * 178.48627 * 14 13 12 40 40 H 1.09006 * 109.44798 * 58.52660 * 14 13 12 41 41 H 0.97004 * 120.00530 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.58826 * 353.36729 * 25 11 9 43 43 H 1.08996 * 109.58862 * 113.80174 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1365 1.1693 0.0000 4 8 1.5308 2.2258 -0.0005 5 6 3.5522 1.1573 0.0056 6 6 4.1992 -0.0278 0.0000 7 7 3.4805 -1.1921 -0.0055 8 6 4.1823 -2.4781 -0.0121 9 6 4.4230 -2.9117 -1.4352 10 8 4.0449 -2.2154 -2.3535 11 7 5.0582 -4.0733 -1.6874 12 6 5.5275 -4.9246 -0.5856 13 6 4.9646 -6.3396 -0.7877 14 6 5.3531 -6.8429 -2.1798 15 6 4.7446 -5.9265 -3.2436 16 1 3.6606 -5.9086 -3.1315 17 6 5.1008 -6.4414 -4.6145 18 1 5.6990 -7.3347 -4.7171 19 6 4.6630 -5.7720 -5.7375 20 7 3.9350 -4.6840 -5.6125 21 14 5.1040 -6.4107 -7.4367 22 1 4.0568 -7.3577 -7.8967 23 1 5.1930 -5.2720 -8.3857 24 1 6.4127 -7.1100 -7.3783 25 6 5.2996 -4.5097 -3.0695 26 6 2.1353 -1.1672 -0.0058 27 8 1.5164 -2.2137 -0.0102 28 1 -0.3634 -0.0048 1.0276 29 1 -0.3633 -0.8876 -0.5180 30 1 -0.3633 0.8924 -0.5097 31 1 4.1072 2.0838 0.0096 32 1 5.2788 -0.0566 -0.0005 33 1 5.1377 -2.3732 0.5022 34 1 3.5752 -3.2260 0.4980 35 1 6.6169 -4.9579 -0.5881 36 1 5.1743 -4.5213 0.3635 37 1 3.8784 -6.3178 -0.6987 38 1 5.3783 -7.0063 -0.0311 39 1 4.9783 -7.8573 -2.3167 40 1 6.4389 -6.8408 -2.2765 41 1 3.6266 -4.2132 -6.4027 42 1 4.7960 -3.8328 -3.7597 43 1 6.3708 -4.5099 -3.2708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:42 Heat of formation + Delta-G solvation = -61.234445 kcal Electronic energy + Delta-G solvation = -27974.946196 eV Core-core repulsion = 24021.374756 eV Total energy + Delta-G solvation = -3953.571440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39408 -39.81634 -38.82817 -37.42503 -36.59304 -35.21263 -33.54749 -32.17557 -31.81259 -29.98258 -28.56021 -27.65849 -25.13830 -24.56159 -23.90511 -23.31435 -21.93476 -20.18009 -19.31520 -18.63350 -17.85736 -17.40445 -17.08784 -16.61216 -16.15907 -15.83193 -15.20901 -15.07932 -14.81003 -14.51809 -14.21999 -13.85436 -13.81746 -13.68411 -13.49997 -13.26644 -12.83770 -12.68988 -12.56987 -12.38120 -12.07596 -11.88942 -11.80792 -11.07799 -10.99964 -10.90689 -10.56868 -10.49615 -10.32765 -10.30486 -9.98929 -9.83656 -9.58865 -9.20264 -9.06831 -8.59880 -8.48804 -7.91437 -6.04679 -4.14127 0.90182 1.73290 1.98679 2.85965 2.94724 3.27227 3.33852 3.35710 3.37056 3.60172 4.23353 4.38512 4.44520 4.63036 4.73550 4.99233 5.04589 5.14895 5.25483 5.26377 5.31487 5.35688 5.39191 5.52309 5.52902 5.63644 5.84122 5.93980 6.06251 6.21575 6.28207 6.51398 6.56551 6.74882 6.89000 7.01097 7.11753 7.13109 7.44793 7.55711 7.79376 7.84766 7.91014 8.07700 8.31395 8.60279 8.90183 9.52160 11.00438 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.003562 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.624778 B = 7858.190430 C = 8641.579152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.556 5.556 3 C 0.550 3.450 4 O -0.525 6.525 5 C -0.304 4.304 6 C 0.190 3.810 7 N -0.516 5.516 8 C 0.088 3.912 9 C 0.489 3.511 10 O -0.525 6.525 11 N -0.600 5.600 12 C 0.106 3.894 13 C -0.135 4.135 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.113 3.887 26 C 0.699 3.301 27 O -0.531 6.531 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.171 0.829 32 H 0.177 0.823 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.264 0.736 42 H 0.123 0.877 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 6.268 16.508 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.300 5.300 3 C 0.347 3.653 4 O -0.401 6.401 5 C -0.331 4.331 6 C 0.065 3.935 7 N -0.234 5.234 8 C -0.037 4.037 9 C 0.274 3.726 10 O -0.401 6.401 11 N -0.333 5.333 12 C -0.018 4.018 13 C -0.173 4.173 14 C -0.148 4.148 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.007 4.007 26 C 0.402 3.598 27 O -0.403 6.403 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.188 0.812 32 H 0.194 0.806 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.141 0.859 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.997 6.648 15.886 17.336 hybrid contribution 0.358 -0.412 -1.013 1.151 sum 2.355 6.236 14.873 16.298 Atomic orbital electron populations 1.21888 0.75449 1.05153 1.03590 1.46312 1.10391 1.06298 1.66975 1.17365 0.88985 0.82842 0.76101 1.90854 1.70871 1.29329 1.49074 1.21827 0.92979 0.98964 1.19323 1.22321 0.98912 0.84241 0.87983 1.44334 1.05078 1.07693 1.66320 1.21914 0.99109 0.84477 0.98209 1.20471 0.79397 0.82497 0.90277 1.90778 1.50174 1.53461 1.45678 1.48520 1.55928 1.19191 1.09661 1.21807 0.99053 0.91923 0.88995 1.22026 1.01144 0.94971 0.99169 1.21626 1.00063 0.99803 0.93353 1.18965 0.96240 0.89736 0.93023 0.95272 1.21067 1.33994 1.11008 0.90027 0.92300 1.25056 0.94700 0.94893 0.99345 1.69877 1.34961 1.17180 1.29734 0.86589 0.78828 0.78468 0.84104 1.20633 1.21176 1.19867 1.22352 0.99348 1.00692 0.78292 1.15764 0.81373 0.84400 0.78294 1.91031 1.65688 1.30124 1.53458 0.90986 0.88971 0.88947 0.81180 0.80608 0.85961 0.85411 0.91445 0.91340 0.91902 0.92023 0.92894 0.93110 0.92600 0.85918 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.13 59.85 0.61 1.58 16 2 N -0.56 -8.02 2.96 -131.49 -0.39 -8.41 16 3 C 0.55 7.84 7.44 -14.96 -0.11 7.73 16 4 O -0.52 -8.69 16.69 5.11 0.09 -8.60 16 5 C -0.30 -3.28 10.00 -39.45 -0.39 -3.67 16 6 C 0.19 1.82 10.38 -16.46 -0.17 1.65 16 7 N -0.52 -6.56 2.10 -122.82 -0.26 -6.81 16 8 C 0.09 1.03 4.16 -5.19 -0.02 1.01 16 9 C 0.49 8.64 7.76 -10.98 -0.09 8.56 16 10 O -0.52 -11.96 15.84 5.55 0.09 -11.88 16 11 N -0.60 -10.69 2.97 -172.52 -0.51 -11.20 16 12 C 0.11 1.36 6.37 -3.49 -0.02 1.34 16 13 C -0.13 -1.95 6.10 -26.39 -0.16 -2.11 16 14 C -0.11 -2.06 5.10 -26.69 -0.14 -2.20 16 15 C 0.04 0.94 2.25 -91.67 -0.21 0.73 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -13.81 8.56 -34.44 -0.29 -14.11 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -25.49 11.39 55.43 0.63 -24.86 16 21 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.11 2.58 5.40 -3.73 -0.02 2.56 16 26 C 0.70 10.82 8.11 -87.29 -0.71 10.11 16 27 O -0.53 -9.63 15.35 5.29 0.08 -9.55 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.15 7.39 -51.93 -0.38 0.77 16 30 H 0.09 1.07 7.42 -51.93 -0.39 0.69 16 31 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.12 0.78 7.82 -51.93 -0.41 0.38 16 34 H 0.13 1.44 6.94 -51.93 -0.36 1.08 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.62 5.93 -51.93 -0.31 0.31 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.12 3.36 5.12 -51.93 -0.27 3.10 16 43 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -36.47 353.16 -7.67 -44.14 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.88 Total: 1.07 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: -1.82 Total: 14.80 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.53 Total: -51.28 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: 0.25 Total: -30.03 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.47 -7.67 -44.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.096 kcal (2) G-P(sol) polarization free energy of solvation -36.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds