Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34759 * 117.00206 * 2 1 4 4 O 1.21517 * 119.99629 * 359.97438 * 3 2 1 5 5 C 1.47284 * 119.99663 * 179.97438 * 3 2 1 6 6 C 1.41337 * 126.43190 * 359.97313 * 5 3 2 7 7 N 1.30436 * 108.01614 * 180.02562 * 6 5 3 8 8 N 1.39925 * 108.91500 * 359.97438 * 7 6 5 9 9 C 1.46500 * 125.74043 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47315 * 305.02396 * 9 8 7 11 11 O 1.21285 * 119.99847 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00168 * 180.02562 * 10 9 8 13 13 C 1.46931 * 120.63030 * 359.97438 * 12 10 9 14 14 C 1.53200 * 108.77279 * 126.37310 * 13 12 10 15 15 C 1.53039 * 109.31160 * 54.63574 * 14 13 12 16 16 C 1.53046 * 109.52798 * 298.64112 * 15 14 13 17 17 H 1.08994 * 109.49581 * 301.40708 * 16 15 14 18 18 C 1.50700 * 109.49577 * 181.31010 * 16 15 14 19 19 H 1.07999 * 120.00091 * 0.02562 * 18 16 15 20 20 C 1.37881 * 119.99871 * 180.02562 * 18 16 15 21 21 N 1.31514 * 119.99744 * 359.97438 * 20 18 16 22 22 Si 1.86796 * 120.00059 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47228 * 59.99945 * 22 20 18 24 24 H 1.48501 * 109.47081 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47127 * 300.00267 * 22 20 18 26 26 C 1.46928 * 120.63178 * 179.97438 * 12 10 9 27 27 C 1.34226 * 108.51568 * 0.24218 * 8 7 6 28 28 H 1.09008 * 109.46769 * 60.00261 * 1 2 3 29 29 H 1.09000 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47197 * 300.00537 * 1 2 3 31 31 H 1.08004 * 125.99617 * 0.05410 * 6 5 3 32 32 H 1.09002 * 109.47139 * 185.02800 * 9 8 7 33 33 H 1.08996 * 109.47537 * 65.02902 * 9 8 7 34 34 H 1.08998 * 109.58425 * 6.59260 * 13 12 10 35 35 H 1.08995 * 109.70793 * 246.22878 * 13 12 10 36 36 H 1.08997 * 109.49280 * 294.68615 * 14 13 12 37 37 H 1.08996 * 109.52417 * 174.60413 * 14 13 12 38 38 H 1.09002 * 109.46050 * 58.65698 * 15 14 13 39 39 H 1.09004 * 109.46034 * 178.62914 * 15 14 13 40 40 H 0.97002 * 119.99462 * 179.97438 * 21 20 18 41 41 H 1.08999 * 109.58766 * 353.41859 * 26 12 10 42 42 H 1.08998 * 109.58326 * 113.83934 * 26 12 10 43 43 H 1.08005 * 126.29571 * 179.72491 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5347 1.2776 0.0006 6 6 4.4323 0.1859 0.0017 7 7 5.6466 0.6620 0.0024 8 7 5.5857 2.0600 0.0013 9 6 6.7364 2.9667 0.0021 10 6 7.6341 2.6380 1.1672 11 8 7.3412 1.7355 1.9227 12 7 8.7618 3.3475 1.3701 13 6 9.1297 4.4440 0.4639 14 6 9.3688 5.7098 1.2931 15 6 10.4075 5.4155 2.3778 16 6 9.8796 4.3209 3.3081 17 1 8.9402 4.6454 3.7553 18 6 10.8892 4.0543 4.3947 19 1 11.8148 4.6102 4.4200 20 6 10.6312 3.1008 5.3566 21 7 9.5038 2.4243 5.3261 22 14 11.8822 2.7708 6.7040 23 1 12.1099 4.0142 7.4834 24 1 11.3695 1.7086 7.6062 25 1 13.1616 2.3279 6.0938 26 6 9.6467 3.0393 2.5018 27 6 4.2956 2.4304 0.0051 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.1604 -0.8594 0.0014 32 1 6.3881 3.9957 0.0909 33 1 7.2916 2.8501 -0.9286 34 1 8.3205 4.6191 -0.2451 35 1 10.0396 4.1842 -0.0770 36 1 8.4341 6.0212 1.7593 37 1 9.7351 6.5060 0.6451 38 1 11.3342 5.0804 1.9119 39 1 10.5975 6.3212 2.9539 40 1 9.3224 1.7532 6.0026 41 1 9.1788 2.2876 3.1374 42 1 10.5995 2.6637 2.1288 43 1 3.9213 3.4435 0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600092810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = -38.080460 kcal Electronic energy + Delta-G solvation = -26855.740529 eV Core-core repulsion = 22903.173121 eV Total energy + Delta-G solvation = -3952.567408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53132 -40.03391 -39.41071 -36.83706 -36.38550 -33.77952 -33.23466 -31.88589 -30.62094 -30.00910 -28.58432 -27.33902 -25.13619 -24.49317 -23.21187 -21.97349 -21.47440 -20.41935 -19.91490 -18.57239 -17.86496 -17.17561 -16.96530 -16.39753 -16.28895 -16.00071 -15.28930 -15.10134 -14.63666 -14.44259 -14.08726 -13.84091 -13.68760 -13.50075 -13.16580 -13.11395 -12.81144 -12.66870 -12.56733 -12.26343 -12.04775 -11.91234 -11.16902 -11.08339 -10.96832 -10.89533 -10.60097 -10.51225 -10.33939 -10.31135 -9.99003 -9.91206 -9.34907 -9.20096 -9.03932 -8.77281 -8.49049 -7.89196 -6.04750 -4.14053 1.25286 2.01039 2.16630 2.78787 2.97586 3.17971 3.28594 3.35444 3.36307 3.47545 4.37102 4.40042 4.55591 4.64541 4.82513 4.89959 4.92381 4.95857 5.03038 5.09640 5.25329 5.32324 5.33240 5.37026 5.51474 5.59495 5.84552 6.02542 6.19653 6.26997 6.39001 6.47753 6.54639 6.60198 6.75685 6.87533 7.03162 7.14328 7.50409 7.55379 7.77939 7.78440 7.90829 8.08775 8.31524 8.65267 8.89790 9.52118 11.00455 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.002830 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.196249 B = 9891.819074 C =10860.832097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.355 6.355 3 C 0.549 3.451 4 O -0.526 6.526 5 C -0.289 4.289 6 C 0.093 3.907 7 N -0.261 5.261 8 N -0.338 5.338 9 C 0.106 3.894 10 C 0.492 3.508 11 O -0.505 6.505 12 N -0.603 5.603 13 C 0.106 3.894 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.041 3.959 17 H 0.028 0.972 18 C -0.524 4.524 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.880 5.880 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.114 3.886 27 C 0.141 3.859 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.196 0.804 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.265 0.735 41 H 0.123 0.877 42 H 0.044 0.956 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 0.715 -15.269 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.395 3.605 4 O -0.416 6.416 5 C -0.302 4.302 6 C -0.096 4.096 7 N -0.078 5.078 8 N -0.115 5.115 9 C -0.018 4.018 10 C 0.276 3.724 11 O -0.379 6.379 12 N -0.338 5.338 13 C -0.018 4.018 14 C -0.173 4.173 15 C -0.149 4.149 16 C 0.022 3.978 17 H 0.046 0.954 18 C -0.562 4.562 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.517 5.517 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.006 4.006 27 C -0.012 4.012 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.213 0.787 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.063 0.937 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.333 0.149 -14.742 18.003 hybrid contribution -0.359 0.222 0.770 0.878 sum -10.691 0.370 -13.972 17.597 Atomic orbital electron populations 1.23231 0.76278 1.03525 1.02474 1.86543 1.23200 1.32726 1.84703 1.19978 0.87491 0.81160 0.71850 1.90820 1.66786 1.36019 1.47976 1.19166 0.90497 0.93582 1.26934 1.24210 0.88815 1.00069 0.96515 1.77452 1.21516 0.86851 1.22018 1.48066 1.04619 1.05663 1.53119 1.21864 0.86299 0.92486 1.01180 1.20134 0.82384 0.83750 0.86179 1.90823 1.71770 1.29588 1.45723 1.48517 1.22895 1.32438 1.29906 1.21699 1.00168 0.87899 0.91997 1.21954 1.00934 0.95872 0.98494 1.21633 0.96849 1.00250 0.96176 1.18966 0.96983 0.89808 0.92088 0.95357 1.21022 1.03969 1.21246 1.09969 0.92358 1.25061 0.95346 0.95865 0.97746 1.69866 1.23067 1.23882 1.34887 0.86637 0.81541 0.77935 0.81783 1.20264 1.21228 1.20207 1.22356 0.90931 1.02654 0.84641 1.22912 0.83515 0.99982 0.94766 0.92021 0.88148 0.91936 0.78733 0.85667 0.86499 0.91532 0.91494 0.92081 0.91988 0.93066 0.92882 0.92514 0.85893 0.93738 0.79254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.36 -4.08 10.41 -40.65 -0.42 -4.51 16 3 C 0.55 7.35 7.95 34.41 0.27 7.63 16 4 O -0.53 -7.99 16.69 -19.28 -0.32 -8.31 16 5 C -0.29 -3.87 6.13 -105.08 -0.64 -4.52 16 6 C 0.09 1.27 11.87 -16.97 -0.20 1.07 16 7 N -0.26 -4.24 11.54 30.87 0.36 -3.89 16 8 N -0.34 -4.79 3.37 -61.97 -0.21 -5.00 16 9 C 0.11 1.30 5.32 -5.19 -0.03 1.27 16 10 C 0.49 9.03 7.72 -10.99 -0.08 8.94 16 11 O -0.51 -12.04 15.11 5.55 0.08 -11.96 16 12 N -0.60 -10.97 2.97 -172.76 -0.51 -11.48 16 13 C 0.11 1.38 6.34 -3.70 -0.02 1.36 16 14 C -0.13 -1.89 6.08 -26.61 -0.16 -2.05 16 15 C -0.11 -2.06 5.11 -26.69 -0.14 -2.20 16 16 C 0.04 0.96 2.25 -91.65 -0.21 0.76 16 17 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.52 -13.83 8.56 -34.44 -0.29 -14.13 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.88 -25.44 11.40 55.43 0.63 -24.80 16 22 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.11 2.64 5.40 -3.71 -0.02 2.62 16 27 C 0.14 1.76 11.25 -16.55 -0.19 1.57 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.20 2.06 8.06 -52.48 -0.42 1.63 16 32 H 0.13 1.05 7.61 -51.93 -0.40 0.66 16 33 H 0.12 1.10 7.94 -51.93 -0.41 0.69 16 34 H 0.07 0.60 5.93 -51.93 -0.31 0.29 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.12 3.41 5.13 -51.93 -0.27 3.14 16 42 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.19 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -35.59 362.39 -6.69 -42.28 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.00 Total: 0.81 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.74 Total: 5.34 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.27 Total: -45.17 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.66 Total: -24.77 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.59 -6.69 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600092810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.202 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds