Wall clock time and date at job start Fri Apr 10 2020 18:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47375 * 2 1 4 4 H 1.08997 * 109.57029 * 180.88685 * 3 2 1 5 5 C 1.50412 * 109.72467 * 60.66911 * 3 2 1 6 6 O 1.21279 * 118.46080 * 47.58217 * 5 3 2 7 7 N 1.33381 * 123.04758 * 227.83162 * 5 3 2 8 8 C 1.45644 * 124.58754 * 3.76912 * 7 5 3 9 9 C 1.52988 * 110.77831 * 338.37646 * 8 7 5 10 10 N 1.47050 * 109.56758 * 301.12858 * 3 2 1 11 11 C 1.34780 * 121.35270 * 342.57513 * 10 3 2 12 12 O 1.21593 * 119.99727 * 353.88477 * 11 10 3 13 13 N 1.34773 * 120.00059 * 173.87968 * 11 10 3 14 14 C 1.40197 * 119.99826 * 174.73159 * 13 11 10 15 15 C 1.40406 * 125.97399 * 359.97438 * 14 13 11 16 16 C 1.35246 * 107.86675 * 179.97438 * 15 14 13 17 17 N 1.34966 * 107.85575 * 0.02562 * 16 15 14 18 18 C 1.46503 * 125.97069 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46882 * 124.99554 * 18 17 16 20 20 H 1.08003 * 119.99997 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00225 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99487 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00404 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46761 * 59.99984 * 23 21 19 25 25 H 1.48493 * 109.47110 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46806 * 300.00260 * 23 21 19 27 27 N 1.31214 * 125.97029 * 179.68956 * 14 13 11 28 28 H 1.08994 * 109.47394 * 184.64327 * 1 2 3 29 29 H 1.09004 * 109.47213 * 304.64281 * 1 2 3 30 30 H 1.09000 * 109.46988 * 64.63437 * 1 2 3 31 31 H 1.09000 * 109.47055 * 239.99575 * 2 1 3 32 32 H 1.08998 * 109.46409 * 119.99952 * 2 1 3 33 33 H 0.97003 * 117.70515 * 184.04900 * 7 5 3 34 34 H 1.08997 * 109.22330 * 98.71726 * 8 7 5 35 35 H 1.09007 * 109.21406 * 218.04680 * 8 7 5 36 36 H 1.08992 * 109.72381 * 166.39947 * 9 8 7 37 37 H 1.09004 * 109.72070 * 287.01295 * 9 8 7 38 38 H 0.96995 * 119.99886 * 354.72685 * 13 11 10 39 39 H 1.08000 * 126.06330 * 0.02562 * 15 14 13 40 40 H 1.07999 * 126.06681 * 180.02562 * 16 15 14 41 41 H 1.08997 * 109.47102 * 244.99748 * 18 17 16 42 42 H 1.08999 * 109.47150 * 5.00385 * 18 17 16 43 43 H 0.96998 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1299 1.4443 -0.0159 5 6 1.5554 2.1523 1.2344 6 8 1.6784 1.5976 2.3059 7 7 0.9925 3.3611 1.2045 8 6 0.7040 4.1090 -0.0115 9 6 1.5737 3.6175 -1.1701 10 7 1.5289 2.1456 -1.1861 11 6 1.0391 1.4703 -2.2447 12 8 1.1150 0.2573 -2.2800 13 7 0.4652 2.1397 -3.2640 14 6 0.0556 1.4494 -4.4135 15 6 0.1822 0.0688 -4.6354 16 6 -0.3298 -0.2038 -5.8572 17 7 -0.7644 0.9567 -6.3920 18 6 -1.3896 1.1172 -7.7072 19 6 -2.7235 1.8007 -7.5492 20 1 -3.0705 2.0872 -6.5674 21 6 -3.5003 2.0612 -8.6581 22 7 -3.0774 1.7127 -9.8537 23 14 -5.1533 2.9090 -8.4624 24 1 -4.9546 4.2435 -7.8420 25 1 -5.7870 3.0716 -9.7954 26 1 -6.0322 2.0853 -7.5940 27 7 -0.5177 1.9799 -5.4678 28 1 -0.3634 -1.0242 0.0832 29 1 -0.3634 0.5842 0.8455 30 1 -0.3633 0.4402 -0.9286 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 0.7626 3.7726 2.0523 34 1 -0.3466 3.9798 -0.2715 35 1 0.9023 5.1667 0.1624 36 1 1.1869 4.0074 -2.1116 37 1 2.6008 3.9533 -1.0273 38 1 0.3355 3.0989 -3.2023 39 1 0.6114 -0.6484 -3.9514 40 1 -0.3817 -1.1772 -6.3222 41 1 -0.7447 1.7220 -8.3447 42 1 -1.5351 0.1376 -8.1623 43 1 -3.6241 1.8956 -10.6338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135932675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:48 Heat of formation + Delta-G solvation = 57.205814 kcal Electronic energy + Delta-G solvation = -27544.599665 eV Core-core repulsion = 23628.456931 eV Total energy + Delta-G solvation = -3916.142734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -41.62616 -40.46077 -39.39211 -36.88664 -35.64660 -34.56030 -33.53567 -32.52195 -30.81111 -29.62652 -29.32195 -27.56897 -26.44164 -24.56486 -23.21229 -22.41594 -21.87233 -20.56460 -19.75070 -19.05397 -18.19689 -17.62776 -16.90414 -16.60697 -16.43269 -16.34161 -15.72145 -15.54539 -14.92818 -14.67587 -14.44160 -14.34922 -13.91444 -13.60857 -13.40820 -13.07413 -12.93544 -12.70730 -12.43627 -12.28372 -12.14890 -11.76906 -11.54542 -11.37420 -11.21514 -10.96012 -10.87605 -10.55100 -10.31042 -10.27460 -9.94277 -9.56602 -9.53169 -9.23389 -9.01478 -8.64917 -8.15114 -7.46503 -6.26340 -4.31578 2.00480 2.26108 2.55810 2.79763 3.01675 3.23134 3.23519 3.27114 3.31842 3.74402 3.90270 4.09238 4.21766 4.31054 4.50626 4.59961 4.76090 4.86381 4.98212 5.08772 5.24333 5.35964 5.43980 5.60863 5.68575 5.74759 5.80560 6.10779 6.13969 6.30250 6.36447 6.45207 6.49357 6.55703 6.75962 6.84858 6.91418 7.04889 7.43007 7.64957 7.72218 7.78907 7.88698 8.02864 8.44658 8.61410 8.77828 9.34078 10.82348 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.002865 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.203469 B = 9771.362912 C =10366.413439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.105 0.895 5 C 0.518 3.482 6 O -0.541 6.541 7 N -0.719 5.719 8 C 0.093 3.907 9 C 0.092 3.908 10 N -0.631 5.631 11 C 0.724 3.276 12 O -0.545 6.545 13 N -0.642 5.642 14 C 0.273 3.727 15 C -0.285 4.285 16 C 0.052 3.948 17 N -0.319 5.319 18 C 0.259 3.741 19 C -0.529 4.529 20 H 0.068 0.932 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.307 5.307 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.403 0.597 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 4.121 18.103 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.052 3.948 4 H 0.122 0.878 5 C 0.303 3.697 6 O -0.418 6.418 7 N -0.371 5.371 8 C -0.032 4.032 9 C -0.032 4.032 10 N -0.372 5.372 11 C 0.426 3.574 12 O -0.420 6.420 13 N -0.294 5.294 14 C 0.019 3.981 15 C -0.316 4.316 16 C -0.098 4.098 17 N -0.101 5.101 18 C 0.142 3.858 19 C -0.568 4.568 20 H 0.086 0.914 21 C -0.140 4.140 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.200 1.200 27 N -0.138 5.138 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.240 0.760 39 H 0.179 0.821 40 H 0.185 0.815 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.206 3.904 17.532 20.658 hybrid contribution -0.904 0.761 0.614 1.332 sum 9.302 4.665 18.146 20.918 Atomic orbital electron populations 1.21858 0.95214 1.01870 1.01112 1.22100 0.97399 0.91797 1.05048 1.21304 0.99414 0.94261 0.79820 0.87781 1.20406 0.76944 0.81025 0.91283 1.90783 1.56452 1.64129 1.30411 1.45364 1.62966 1.18582 1.10184 1.21796 1.00311 0.96366 0.84773 1.22056 1.01499 0.80323 0.99337 1.47304 1.66888 1.05847 1.17113 1.15349 0.78132 0.84957 0.78949 1.90803 1.62056 1.11072 1.78104 1.41622 1.62257 1.10925 1.14618 1.18770 1.00303 0.91303 0.87678 1.21496 1.16164 0.94654 0.99308 1.22565 0.99575 0.92580 0.95114 1.49060 1.43337 1.02772 1.14960 1.19733 0.93290 0.99267 0.73556 1.21218 1.01652 1.39542 0.94359 0.91365 1.24942 0.98806 0.95517 0.94780 1.69907 1.38450 1.46768 0.98235 0.86388 0.82764 0.80077 0.77277 1.19953 1.21044 1.20041 1.77316 1.23356 1.13651 0.99484 0.92553 0.94601 0.91784 0.85716 0.91134 0.76458 0.90836 0.88913 0.88049 0.89444 0.75958 0.82119 0.81541 0.93752 0.92542 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.94 37.16 0.33 -1.54 16 2 C -0.13 -1.49 4.92 -26.73 -0.13 -1.62 16 3 C 0.16 1.59 3.36 -68.92 -0.23 1.36 16 4 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 5 C 0.52 5.39 6.06 -11.75 -0.07 5.32 16 6 O -0.54 -7.51 17.18 5.56 0.10 -7.41 16 7 N -0.72 -5.16 5.42 -61.33 -0.33 -5.49 16 8 C 0.09 0.44 7.34 -4.51 -0.03 0.41 16 9 C 0.09 0.52 6.48 -3.63 -0.02 0.49 16 10 N -0.63 -6.02 2.82 -172.26 -0.49 -6.51 16 11 C 0.72 9.51 6.50 -86.92 -0.57 8.94 16 12 O -0.55 -8.41 8.40 5.28 0.04 -8.37 16 13 N -0.64 -9.02 5.34 -15.50 -0.08 -9.11 16 14 C 0.27 5.13 8.11 -154.35 -1.25 3.88 16 15 C -0.28 -5.33 9.61 -39.83 -0.38 -5.71 16 16 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 17 N -0.32 -7.17 3.67 -62.56 -0.23 -7.40 16 18 C 0.26 6.42 6.26 -5.19 -0.03 6.39 16 19 C -0.53 -14.43 9.23 -34.44 -0.32 -14.75 16 20 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.90 -24.97 13.29 55.43 0.74 -24.23 16 23 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 N -0.31 -6.72 12.42 31.44 0.39 -6.33 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.47 7.10 -51.93 -0.37 0.10 16 30 H 0.06 0.94 5.12 -51.93 -0.27 0.68 16 31 H 0.13 1.63 5.60 -52.29 -0.29 1.33 16 32 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 33 H 0.40 2.42 8.80 -40.82 -0.36 2.07 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.10 0.47 5.76 -51.93 -0.30 0.17 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.40 4.51 6.45 -40.82 -0.26 4.25 16 39 H 0.16 2.90 5.93 -52.49 -0.31 2.59 16 40 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 41 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -33.64 346.79 -8.15 -41.79 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.49 Total: 6.29 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -3.00 Total: 5.57 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.00 Total: -59.07 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.14 Total: -15.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.64 -8.15 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135932675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.000 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds