Wall clock time and date at job start Fri Apr 10 2020 18:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47375 * 2 1 4 4 H 1.08997 * 109.57029 * 180.88685 * 3 2 1 5 5 C 1.50412 * 109.72467 * 60.66911 * 3 2 1 6 6 O 1.21279 * 118.46080 * 47.58217 * 5 3 2 7 7 N 1.33381 * 123.04758 * 227.83162 * 5 3 2 8 8 C 1.45644 * 124.58754 * 3.76912 * 7 5 3 9 9 C 1.52988 * 110.77831 * 338.37646 * 8 7 5 10 10 N 1.47050 * 109.56758 * 301.12858 * 3 2 1 11 11 C 1.34780 * 121.35270 * 342.57513 * 10 3 2 12 12 O 1.21593 * 119.99727 * 353.88477 * 11 10 3 13 13 N 1.34773 * 120.00059 * 173.87968 * 11 10 3 14 14 C 1.40197 * 119.99826 * 174.73159 * 13 11 10 15 15 C 1.40406 * 125.97399 * 359.97438 * 14 13 11 16 16 C 1.35246 * 107.86675 * 179.97438 * 15 14 13 17 17 N 1.34966 * 107.85575 * 0.02562 * 16 15 14 18 18 C 1.46503 * 125.97069 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46882 * 124.99554 * 18 17 16 20 20 H 1.08003 * 119.99997 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00225 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99487 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00404 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46761 * 59.99984 * 23 21 19 25 25 H 1.48493 * 109.47110 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46806 * 300.00260 * 23 21 19 27 27 N 1.31214 * 125.97029 * 179.68956 * 14 13 11 28 28 H 1.08994 * 109.47394 * 184.64327 * 1 2 3 29 29 H 1.09004 * 109.47213 * 304.64281 * 1 2 3 30 30 H 1.09000 * 109.46988 * 64.63437 * 1 2 3 31 31 H 1.09000 * 109.47055 * 239.99575 * 2 1 3 32 32 H 1.08998 * 109.46409 * 119.99952 * 2 1 3 33 33 H 0.97003 * 117.70515 * 184.04900 * 7 5 3 34 34 H 1.08997 * 109.22330 * 98.71726 * 8 7 5 35 35 H 1.09007 * 109.21406 * 218.04680 * 8 7 5 36 36 H 1.08992 * 109.72381 * 166.39947 * 9 8 7 37 37 H 1.09004 * 109.72070 * 287.01295 * 9 8 7 38 38 H 0.96995 * 119.99886 * 354.72685 * 13 11 10 39 39 H 1.08000 * 126.06330 * 0.02562 * 15 14 13 40 40 H 1.07999 * 126.06681 * 180.02562 * 16 15 14 41 41 H 1.08997 * 109.47102 * 244.99748 * 18 17 16 42 42 H 1.08999 * 109.47150 * 5.00385 * 18 17 16 43 43 H 0.96998 * 119.99997 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1299 1.4443 -0.0159 5 6 1.5554 2.1523 1.2344 6 8 1.6784 1.5976 2.3059 7 7 0.9925 3.3611 1.2045 8 6 0.7040 4.1090 -0.0115 9 6 1.5737 3.6175 -1.1701 10 7 1.5289 2.1456 -1.1861 11 6 1.0391 1.4703 -2.2447 12 8 1.1150 0.2573 -2.2800 13 7 0.4652 2.1397 -3.2640 14 6 0.0556 1.4494 -4.4135 15 6 0.1822 0.0688 -4.6354 16 6 -0.3298 -0.2038 -5.8572 17 7 -0.7644 0.9567 -6.3920 18 6 -1.3896 1.1172 -7.7072 19 6 -2.7235 1.8007 -7.5492 20 1 -3.0705 2.0872 -6.5674 21 6 -3.5003 2.0612 -8.6581 22 7 -3.0774 1.7127 -9.8537 23 14 -5.1533 2.9090 -8.4624 24 1 -4.9546 4.2435 -7.8420 25 1 -5.7870 3.0716 -9.7954 26 1 -6.0322 2.0853 -7.5940 27 7 -0.5177 1.9799 -5.4678 28 1 -0.3634 -1.0242 0.0832 29 1 -0.3634 0.5842 0.8455 30 1 -0.3633 0.4402 -0.9286 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 0.7626 3.7726 2.0523 34 1 -0.3466 3.9798 -0.2715 35 1 0.9023 5.1667 0.1624 36 1 1.1869 4.0074 -2.1116 37 1 2.6008 3.9533 -1.0273 38 1 0.3355 3.0989 -3.2023 39 1 0.6114 -0.6484 -3.9514 40 1 -0.3817 -1.1772 -6.3222 41 1 -0.7447 1.7220 -8.3447 42 1 -1.5351 0.1376 -8.1623 43 1 -3.6241 1.8956 -10.6338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135932675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:42 Heat of formation + Delta-G solvation = 33.040890 kcal Electronic energy + Delta-G solvation = -27545.647534 eV Core-core repulsion = 23628.456931 eV Total energy + Delta-G solvation = -3917.190603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 6.83 seconds Orbital eigenvalues (eV) -42.60337 -41.81027 -40.42476 -37.67341 -36.78301 -35.54469 -35.32539 -33.69549 -32.41080 -30.86790 -30.30219 -28.84270 -27.93075 -25.30141 -24.94033 -23.27255 -23.10797 -21.98233 -21.01213 -19.98880 -19.03202 -18.69507 -18.44892 -18.05867 -17.42824 -17.28089 -16.91802 -16.63559 -16.23886 -15.86234 -15.72799 -15.49359 -15.12972 -14.58761 -14.44550 -14.33613 -14.13701 -13.85926 -13.78023 -13.63145 -13.32023 -12.98186 -12.80829 -12.68749 -12.52040 -12.34085 -12.25202 -12.18285 -11.84669 -11.55706 -11.36669 -11.28055 -10.69841 -10.33781 -10.17559 -9.86190 -9.66134 -9.00668 -8.30549 -6.44782 0.97024 1.12322 1.40147 1.41582 1.45860 1.50406 1.70913 1.92626 2.19584 2.36543 2.42368 2.77562 3.01111 3.38477 3.67165 3.79671 4.00919 4.03320 4.10493 4.24245 4.30928 4.38823 4.61243 4.65939 4.68726 4.76769 4.87828 4.91545 4.97640 4.99731 5.04546 5.09802 5.25734 5.38526 5.53172 5.56655 5.63333 5.76192 5.85476 6.02447 6.17192 6.32552 6.58925 6.69160 7.06575 7.14059 7.25195 7.40120 8.76564 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.002865 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.203469 B = 9771.362912 C =10366.413439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.159 3.841 4 H 0.124 0.876 5 C 0.518 3.482 6 O -0.582 6.582 7 N -0.707 5.707 8 C 0.092 3.908 9 C 0.083 3.917 10 N -0.621 5.621 11 C 0.722 3.278 12 O -0.570 6.570 13 N -0.634 5.634 14 C 0.286 3.714 15 C -0.288 4.288 16 C 0.053 3.947 17 N -0.346 5.346 18 C 0.274 3.726 19 C -0.547 4.547 20 H 0.053 0.947 21 C 0.019 3.981 22 N -0.922 5.922 23 Si 0.970 3.030 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.271 1.271 27 N -0.346 5.346 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.408 0.592 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.417 0.583 39 H 0.170 0.830 40 H 0.197 0.803 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.659 5.600 19.264 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.052 3.948 4 H 0.141 0.859 5 C 0.304 3.696 6 O -0.462 6.462 7 N -0.358 5.358 8 C -0.033 4.033 9 C -0.039 4.039 10 N -0.360 5.360 11 C 0.424 3.576 12 O -0.447 6.447 13 N -0.288 5.288 14 C 0.031 3.969 15 C -0.320 4.320 16 C -0.095 4.095 17 N -0.128 5.128 18 C 0.155 3.845 19 C -0.585 4.585 20 H 0.072 0.928 21 C -0.182 4.182 22 N -0.560 5.560 23 Si 0.794 3.206 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.196 1.196 27 N -0.177 5.177 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.244 0.756 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.257 0.743 39 H 0.187 0.813 40 H 0.214 0.786 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.326 5.450 18.724 22.066 hybrid contribution -0.858 0.313 0.366 0.984 sum 9.468 5.763 19.090 22.074 Atomic orbital electron populations 1.21753 0.96184 1.01341 0.99897 1.21976 0.96378 0.93222 1.04387 1.21297 1.00412 0.93225 0.79854 0.85909 1.20369 0.77015 0.81718 0.90535 1.90771 1.58435 1.65417 1.31580 1.45355 1.61248 1.17613 1.11620 1.22026 0.99927 0.98078 0.83248 1.22454 1.03479 0.77536 1.00463 1.47268 1.65544 1.07568 1.15666 1.15477 0.78005 0.84760 0.79331 1.90790 1.62851 1.12359 1.78724 1.41591 1.62184 1.11566 1.13492 1.19033 0.98250 0.91681 0.87956 1.21691 1.16081 0.94947 0.99232 1.23141 0.98232 0.92919 0.95206 1.48788 1.45222 1.03958 1.14805 1.19298 0.92062 0.98396 0.74763 1.21388 1.02975 1.40252 0.93885 0.92838 1.25731 1.02154 0.95922 0.94381 1.69989 1.39762 1.47424 0.98852 0.85422 0.78559 0.78972 0.77625 1.19614 1.19978 1.19621 1.77233 1.25518 1.14403 1.00574 0.92991 0.94936 0.93393 0.86853 0.91154 0.75580 0.91073 0.84859 0.86825 0.86932 0.74337 0.81275 0.78612 0.96060 0.92607 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 8.94 71.98 0.64 -2.84 16 2 C -0.12 -2.82 4.92 30.59 0.15 -2.66 16 3 C 0.16 2.92 3.36 44.05 0.15 3.07 16 4 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 5 C 0.52 9.89 6.06 87.78 0.53 10.42 16 6 O -0.58 -15.66 17.18 -3.03 -0.05 -15.71 16 7 N -0.71 -8.27 5.42 -467.13 -2.53 -10.80 16 8 C 0.09 0.53 7.34 86.54 0.63 1.16 16 9 C 0.08 0.65 6.48 86.23 0.56 1.20 16 10 N -0.62 -10.50 2.82 -817.17 -2.31 -12.81 16 11 C 0.72 17.96 6.50 179.05 1.16 19.13 16 12 O -0.57 -17.20 8.40 -4.01 -0.03 -17.23 16 13 N -0.63 -16.97 5.34 -321.22 -1.71 -18.69 16 14 C 0.29 10.61 8.11 133.31 1.08 11.69 16 15 C -0.29 -10.63 9.61 22.11 0.21 -10.41 16 16 C 0.05 2.03 11.44 83.52 0.96 2.98 16 17 N -0.35 -15.70 3.67 -351.83 -1.29 -17.00 16 18 C 0.27 13.91 6.26 85.63 0.54 14.45 16 19 C -0.55 -30.27 9.23 25.60 0.24 -30.03 16 20 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 21 C 0.02 1.00 5.46 84.65 0.46 1.47 16 22 N -0.92 -51.64 13.29 21.45 0.28 -51.35 16 23 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 N -0.35 -15.26 12.42 -54.43 -0.68 -15.93 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.03 0.84 7.10 -2.38 -0.02 0.82 16 30 H 0.05 1.39 5.12 -2.39 -0.01 1.38 16 31 H 0.11 2.93 5.60 -8.11 -0.05 2.88 16 32 H 0.07 1.62 7.86 -2.39 -0.02 1.60 16 33 H 0.41 3.89 8.80 -92.71 -0.82 3.07 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 35 H 0.13 -0.18 8.14 -2.38 -0.02 -0.20 16 36 H 0.11 0.65 5.76 -2.39 -0.01 0.64 16 37 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.42 8.54 6.45 -92.71 -0.60 7.94 16 39 H 0.17 5.98 5.93 -2.91 -0.02 5.96 16 40 H 0.20 5.96 8.06 -2.91 -0.02 5.93 16 41 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 2.79 8.07 -2.39 -0.02 2.77 16 43 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -74.07 346.79 0.65 -73.42 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.37 Total: 21.67 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 7.31 Total: 19.62 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -8.24 Total: -126.58 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.09 Total: -32.95 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.07 0.65 -73.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135932675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.461 kcal (2) G-P(sol) polarization free energy of solvation -74.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.83 seconds