Wall clock time and date at job start Fri Apr 10 2020 18:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35246 * 126.06766 * 2 1 4 4 C 1.40406 * 107.86363 * 179.97438 * 3 2 1 5 5 N 1.40198 * 125.97042 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99922 * 359.97438 * 5 4 3 7 7 O 1.21589 * 119.99996 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99909 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00181 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.88300 * 322.63932 * 9 8 6 11 11 C 1.54627 * 110.97327 * 86.45276 * 9 8 6 12 12 C 1.51283 * 104.19534 * 142.92092 * 11 9 8 13 13 O 1.21279 * 124.93857 * 163.71750 * 12 11 9 14 14 N 1.34417 * 110.11678 * 343.74279 * 12 11 9 15 15 C 1.46502 * 124.35146 * 179.57049 * 14 12 11 16 16 C 1.46769 * 111.30165 * 359.59726 * 14 12 11 17 17 N 1.31211 * 108.05746 * 0.26312 * 4 3 2 18 18 N 1.34963 * 126.07428 * 179.97438 * 2 1 3 19 19 C 1.46504 * 125.97369 * 0.02562 * 18 2 1 20 20 C 1.50699 * 109.47062 * 90.00007 * 19 18 2 21 21 H 1.08004 * 120.00178 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00116 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99706 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99953 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47034 * 89.99630 * 24 22 20 26 26 H 1.48500 * 109.46883 * 209.99476 * 24 22 20 27 27 H 1.48494 * 109.47421 * 329.99673 * 24 22 20 28 28 H 1.08995 * 109.47013 * 90.02706 * 1 2 3 29 29 H 1.09003 * 109.47083 * 210.02688 * 1 2 3 30 30 H 1.09004 * 109.47556 * 330.02566 * 1 2 3 31 31 H 1.07999 * 126.07172 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00170 * 180.02562 * 5 4 3 33 33 H 0.97002 * 120.00061 * 0.02562 * 8 6 5 34 34 H 1.09005 * 110.48027 * 261.59577 * 11 9 8 35 35 H 1.09000 * 110.48552 * 24.23656 * 11 9 8 36 36 H 1.08999 * 109.46755 * 0.03268 * 15 14 12 37 37 H 1.09002 * 109.46411 * 120.02597 * 15 14 12 38 38 H 1.08990 * 109.47439 * 240.02854 * 15 14 12 39 39 H 1.08998 * 110.24703 * 258.01607 * 16 14 12 40 40 H 1.08997 * 110.24528 * 136.00848 * 16 14 12 41 41 H 1.09002 * 109.47265 * 210.00327 * 19 18 2 42 42 H 1.09000 * 109.47095 * 330.00441 * 19 18 2 43 43 H 0.97003 * 119.99855 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7737 1.4752 0.0013 6 6 4.6369 2.8160 0.0009 7 8 3.5277 3.3140 0.0005 8 7 5.7297 3.6049 0.0011 9 6 5.5810 5.0623 0.0012 10 1 4.7364 5.3668 -0.6168 11 6 5.4359 5.6037 1.4424 12 6 6.1940 6.9127 1.4250 13 8 6.0957 7.7835 2.2634 14 7 6.9920 6.9705 0.3449 15 6 7.8585 8.1054 0.0170 16 6 6.8832 5.7509 -0.4643 17 7 3.6337 -0.6575 -0.0048 18 7 2.3017 -1.0908 0.0005 19 6 1.8501 -2.4846 0.0006 20 6 1.6958 -2.9627 -1.4202 21 1 1.9120 -2.2950 -2.2412 22 6 1.2776 -4.2521 -1.6721 23 7 1.0138 -5.0650 -0.6724 24 14 1.0870 -4.8450 -3.4332 25 1 2.3682 -5.4342 -3.8985 26 1 0.0175 -5.8732 -3.4963 27 1 0.7239 -3.6989 -4.3048 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 1.9720 2.1212 -0.0004 32 1 5.6587 1.0780 0.0013 33 1 6.6146 3.2077 0.0011 34 1 4.3862 5.7739 1.6819 35 1 5.8840 4.9127 2.1564 36 1 7.7503 8.8771 0.7791 37 1 8.8958 7.7722 -0.0179 38 1 7.5743 8.5111 -0.9538 39 1 7.7391 5.1007 -0.2835 40 1 6.8181 6.0048 -1.5223 41 1 2.5846 -3.1044 0.5148 42 1 0.8913 -2.5558 0.5140 43 1 0.7199 -5.9723 -0.8496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272108843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:08 Heat of formation + Delta-G solvation = 27.590281 kcal Electronic energy + Delta-G solvation = -26167.736035 eV Core-core repulsion = 22250.309075 eV Total energy + Delta-G solvation = -3917.426960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -41.14423 -40.61751 -39.53315 -37.02854 -35.05346 -34.66335 -33.40319 -31.94256 -31.20977 -30.65671 -28.02193 -26.96541 -26.46758 -26.27456 -23.42607 -22.47146 -21.39011 -20.30705 -19.81600 -19.60061 -17.96619 -17.24165 -16.98425 -16.69438 -16.22761 -15.85877 -15.54065 -15.31325 -14.79717 -14.46011 -14.32275 -14.18222 -14.06846 -13.85584 -13.65349 -13.02317 -12.88648 -12.72220 -12.48746 -12.38471 -12.28992 -12.11706 -11.70618 -11.62839 -11.40217 -11.13158 -10.84600 -10.51092 -10.37864 -10.27361 -10.08139 -9.72123 -9.57736 -9.41841 -9.23162 -8.65225 -7.94535 -7.44133 -6.26363 -4.33889 2.10964 2.19976 2.55216 2.62002 3.02036 3.20623 3.26949 3.31023 3.47585 3.74724 3.85994 4.05236 4.19615 4.30883 4.45554 4.48473 4.83795 4.89032 4.92991 5.07373 5.10978 5.27441 5.33505 5.47244 5.53075 5.68944 5.89384 5.97138 6.05515 6.11480 6.17817 6.44505 6.50206 6.58953 6.60306 6.92022 7.02901 7.07417 7.47629 7.66240 7.74362 7.84366 7.88428 8.04990 8.46645 8.64906 8.74431 9.32338 10.80845 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.031008 B = 0.002159 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.761972 B =12963.581535 C =13353.796566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.280 3.720 5 N -0.641 5.641 6 C 0.716 3.284 7 O -0.560 6.560 8 N -0.736 5.736 9 C 0.160 3.840 10 H 0.115 0.885 11 C -0.170 4.170 12 C 0.522 3.478 13 O -0.529 6.529 14 N -0.625 5.625 15 C 0.093 3.907 16 C 0.099 3.901 17 N -0.323 5.323 18 N -0.317 5.317 19 C 0.259 3.741 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.407 0.593 33 H 0.400 0.600 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.104 20.349 0.191 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.027 3.973 5 N -0.291 5.291 6 C 0.415 3.585 7 O -0.435 6.435 8 N -0.393 5.393 9 C 0.053 3.947 10 H 0.133 0.867 11 C -0.211 4.211 12 C 0.309 3.691 13 O -0.405 6.405 14 N -0.360 5.360 15 C -0.049 4.049 16 C -0.025 4.025 17 N -0.153 5.153 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.574 4.574 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.197 1.197 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.242 0.758 33 H 0.235 0.765 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.694 19.978 0.662 23.158 hybrid contribution 0.561 -0.309 -1.040 1.222 sum 12.255 19.669 -0.378 23.177 Atomic orbital electron populations 1.20334 0.87906 1.02827 1.03166 1.21066 0.94914 0.87158 1.00856 1.21225 0.89644 0.99822 1.21294 1.18640 0.86460 0.89264 1.02952 1.41335 1.07733 1.03583 1.76441 1.15547 0.84555 0.80468 0.77943 1.90898 1.23349 1.73405 1.55807 1.44887 1.08055 1.05158 1.81231 1.21528 0.98267 0.78885 0.96053 0.86665 1.22898 1.03675 0.95477 0.99080 1.20916 0.79259 0.88428 0.80470 1.90738 1.66089 1.43365 1.40305 1.48138 1.43959 1.18285 1.25652 1.21591 0.93292 0.88138 1.01884 1.22272 0.97564 0.86148 0.96526 1.77249 1.00012 1.08288 1.29779 1.48971 1.00862 1.07770 1.52380 1.19686 0.95976 0.71336 0.98914 1.21318 1.46721 0.97930 0.91390 0.91767 1.24933 0.94699 0.96109 0.98103 1.69921 1.44958 1.07089 1.30998 0.86353 0.77991 0.78572 0.83753 1.20369 1.20891 1.19673 0.90434 0.90880 0.90801 0.82198 0.75846 0.76537 0.86913 0.87164 0.89758 0.91939 0.91828 0.90308 0.89096 0.93033 0.92769 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.11 36.00 0.36 -1.05 16 2 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 3 C -0.29 -5.77 9.52 -39.83 -0.38 -6.15 16 4 C 0.28 5.45 8.11 -154.36 -1.25 4.20 16 5 N -0.64 -9.02 5.46 -15.50 -0.08 -9.10 16 6 C 0.72 9.14 8.53 -86.92 -0.74 8.40 16 7 O -0.56 -9.17 13.21 5.29 0.07 -9.10 16 8 N -0.74 -5.49 5.19 -57.08 -0.30 -5.79 16 9 C 0.16 1.10 3.43 -66.30 -0.23 0.87 16 10 H 0.12 0.94 7.73 -51.93 -0.40 0.53 16 11 C -0.17 -1.42 6.59 -26.74 -0.18 -1.59 16 12 C 0.52 5.19 8.02 -10.86 -0.09 5.10 16 13 O -0.53 -7.46 17.35 5.56 0.10 -7.36 16 14 N -0.62 -4.29 3.33 -180.29 -0.60 -4.89 16 15 C 0.09 0.47 11.14 59.85 0.67 1.14 16 16 C 0.10 0.44 7.07 -3.12 -0.02 0.41 16 17 N -0.32 -7.23 12.59 31.44 0.40 -6.83 16 18 N -0.32 -7.39 3.59 -58.32 -0.21 -7.60 16 19 C 0.26 6.54 5.99 -5.19 -0.03 6.51 16 20 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16 21 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 24 Si 0.91 20.89 29.54 -169.99 -5.02 15.86 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.24 7.07 -51.93 -0.37 0.87 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 32 H 0.41 4.38 8.84 -40.82 -0.36 4.02 16 33 H 0.40 1.71 8.38 -40.82 -0.34 1.37 16 34 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.11 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.08 0.54 7.53 -51.93 -0.39 0.15 16 37 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.22 7.77 -51.93 -0.40 -0.19 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.05 1.36 7.04 -51.93 -0.37 0.99 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -35.49 366.60 -8.13 -43.61 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.87 Total: 3.82 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.88 Total: 5.94 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.06 Total: -58.30 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.17 Total: -16.46 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.49 -8.13 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272108843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.204 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds