Wall clock time and date at job start Fri Apr 10 2020 18:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34797 * 125.49932 * 2 1 4 4 C 1.41418 * 108.26110 * 179.97438 * 3 2 1 5 5 N 1.32590 * 126.40713 * 179.97438 * 4 3 2 6 6 C 1.34476 * 119.99838 * 5.96386 * 5 4 3 7 7 O 1.35345 * 120.00036 * 174.59126 * 6 5 4 8 8 N 1.30898 * 119.99825 * 354.58911 * 6 5 4 9 9 C 1.46500 * 119.99796 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.40464 * 359.82282 * 9 8 6 11 11 C 1.53062 * 109.40292 * 119.57322 * 9 8 6 12 12 C 1.53344 * 108.42686 * 169.02734 * 11 9 8 13 13 C 1.52915 * 108.67455 * 292.46630 * 12 11 9 14 14 N 1.45755 * 110.48933 * 50.75124 * 13 12 11 15 15 C 1.33356 * 124.10364 * 340.93058 * 14 13 12 16 16 O 1.21284 * 118.24444 * 182.20139 * 15 14 13 17 17 N 1.37664 * 107.19273 * 0.24144 * 4 3 2 18 18 H 0.97003 * 126.38332 * 179.74406 * 17 4 3 19 19 N 1.36614 * 125.49595 * 179.97438 * 2 1 3 20 20 C 1.46507 * 125.84032 * 0.03927 * 19 2 1 21 21 C 1.50698 * 109.46893 * 84.99944 * 20 19 2 22 22 H 1.07995 * 120.00181 * 359.97438 * 21 20 19 23 23 C 1.37885 * 119.99639 * 180.02562 * 21 20 19 24 24 N 1.31508 * 119.99862 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99558 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47405 * 90.00110 * 25 23 21 27 27 H 1.48505 * 109.46790 * 209.99859 * 25 23 21 28 28 H 1.48493 * 109.47228 * 329.99295 * 25 23 21 29 29 H 1.09002 * 109.47268 * 90.02440 * 1 2 3 30 30 H 1.08997 * 109.47239 * 210.02897 * 1 2 3 31 31 H 1.09001 * 109.47152 * 330.03093 * 1 2 3 32 32 H 1.08001 * 125.86906 * 359.95720 * 3 2 1 33 33 H 0.96703 * 114.00184 * 359.97438 * 7 6 5 34 34 H 1.09007 * 109.67111 * 288.75714 * 11 9 8 35 35 H 1.08994 * 109.67848 * 49.25228 * 11 9 8 36 36 H 1.09005 * 109.60305 * 172.70780 * 12 11 9 37 37 H 1.09002 * 109.60520 * 52.22189 * 12 11 9 38 38 H 1.08997 * 109.30195 * 290.44244 * 13 12 11 39 39 H 1.09002 * 109.30375 * 171.06235 * 13 12 11 40 40 H 0.96993 * 117.95007 * 160.94571 * 14 13 12 41 41 H 1.08995 * 109.46983 * 204.99700 * 20 19 2 42 42 H 1.08995 * 109.47398 * 324.99661 * 20 19 2 43 43 H 0.97007 * 119.99656 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0974 0.0000 4 6 3.6403 0.6783 0.0006 5 7 4.7082 1.4643 0.0003 6 6 4.5630 2.7958 0.1204 7 8 5.6546 3.5884 0.2302 8 7 3.3659 3.3253 0.1309 9 6 3.2078 4.7759 0.2611 10 1 4.1901 5.2417 0.3397 11 6 2.4855 5.3215 -0.9731 12 6 2.0870 6.7765 -0.6978 13 6 1.0173 6.7928 0.3948 14 7 1.4476 6.0033 1.5419 15 6 2.4106 5.0819 1.4965 16 8 2.6558 4.4577 2.5071 17 7 3.6393 -0.6983 -0.0046 18 1 4.4197 -1.2743 -0.0090 19 7 2.3002 -1.1123 0.0005 20 6 1.8313 -2.5003 0.0003 21 6 1.5540 -2.9366 -1.4152 22 1 1.7109 -2.2487 -2.2329 23 6 1.0991 -4.2137 -1.6663 24 7 0.9076 -5.0512 -0.6706 25 14 0.7560 -4.7548 -3.4211 26 1 1.9864 -5.3452 -4.0066 27 1 -0.3290 -5.7687 -3.4233 28 1 0.3378 -3.5807 -4.2283 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8903 0.5134 32 1 1.9446 2.1208 -0.0007 33 1 6.4933 3.1073 0.2129 34 1 3.1507 5.2802 -1.8357 35 1 1.5933 4.7269 -1.1690 36 1 1.6874 7.2246 -1.6076 37 1 2.9596 7.3377 -0.3637 38 1 0.0910 6.3769 -0.0016 39 1 0.8408 7.8209 0.7109 40 1 1.0058 6.1576 2.3915 41 1 2.5972 -3.1425 0.4350 42 1 0.9173 -2.5752 0.5893 43 1 0.5878 -5.9498 -0.8473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330703856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:53 Heat of formation + Delta-G solvation = 17.066772 kcal Electronic energy + Delta-G solvation = -27220.151347 eV Core-core repulsion = 23302.268053 eV Total energy + Delta-G solvation = -3917.883293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.22583 -41.16487 -39.55209 -37.33978 -36.56286 -35.38143 -34.84056 -33.82655 -32.63167 -31.83129 -29.27818 -28.72623 -28.26712 -25.28943 -24.77832 -23.57848 -22.88248 -21.53738 -20.89103 -19.89816 -19.25684 -18.76864 -18.34271 -17.78082 -17.38978 -17.02412 -16.59257 -16.32932 -15.78256 -15.62162 -15.29059 -14.98734 -14.83789 -14.66424 -14.37234 -14.24806 -14.17703 -14.06537 -13.77405 -13.59890 -13.19961 -13.07967 -12.91269 -12.71428 -12.47511 -12.27532 -12.18383 -12.15609 -11.89573 -11.44810 -10.86362 -10.75913 -10.43359 -10.36290 -10.00691 -9.88086 -9.59920 -8.44667 -8.02369 -6.53056 0.26851 0.63272 1.39511 1.43368 1.52153 1.58455 1.74060 2.32386 2.42914 2.67065 2.90337 2.97269 3.25749 3.72352 3.86253 3.88649 4.00333 4.11449 4.19716 4.37338 4.42921 4.45778 4.58996 4.71751 4.72899 4.88626 4.89110 4.98263 5.01087 5.02563 5.11379 5.17049 5.19738 5.42322 5.48377 5.55985 5.73855 5.98847 6.03076 6.24767 6.36054 6.42087 6.58871 6.79851 7.20422 7.33507 7.39714 7.61366 8.69573 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.018502 B = 0.003035 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.972038 B = 9223.308905 C = 9673.741374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.184 3.816 3 C -0.324 4.324 4 C 0.466 3.534 5 N -0.685 5.685 6 C 0.543 3.457 7 O -0.510 6.510 8 N -0.624 5.624 9 C 0.075 3.925 10 H 0.067 0.933 11 C -0.104 4.104 12 C -0.130 4.130 13 C 0.107 3.893 14 N -0.714 5.714 15 C 0.522 3.478 16 O -0.604 6.604 17 N -0.472 5.472 18 H 0.450 0.550 19 N -0.353 5.353 20 C 0.269 3.731 21 C -0.559 4.559 22 H 0.059 0.941 23 C 0.030 3.970 24 N -0.915 5.915 25 Si 0.964 3.036 26 H -0.278 1.278 27 H -0.278 1.278 28 H -0.267 1.267 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.195 0.805 33 H 0.411 0.589 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.400 0.600 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 18.819 -1.467 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 C -0.357 4.357 4 C 0.213 3.787 5 N -0.441 5.441 6 C 0.228 3.772 7 O -0.305 6.305 8 N -0.378 5.378 9 C -0.040 4.040 10 H 0.085 0.915 11 C -0.143 4.143 12 C -0.168 4.168 13 C -0.016 4.016 14 N -0.365 5.365 15 C 0.309 3.691 16 O -0.485 6.485 17 N -0.195 5.195 18 H 0.298 0.702 19 N -0.141 5.141 20 C 0.152 3.848 21 C -0.597 4.597 22 H 0.077 0.923 23 C -0.172 4.172 24 N -0.553 5.553 25 Si 0.789 3.211 26 H -0.204 1.204 27 H -0.203 1.203 28 H -0.192 1.192 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.211 0.789 33 H 0.267 0.733 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.235 0.765 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.949 17.958 -1.180 18.102 hybrid contribution 1.052 -0.708 -0.197 1.283 sum -0.897 17.250 -1.377 17.328 Atomic orbital electron populations 1.20705 0.84152 1.04883 1.04978 1.21874 0.95893 0.84731 0.91597 1.22602 0.90478 1.00841 1.21802 1.18819 0.91760 0.82005 0.86067 1.68216 1.27820 1.00989 1.47043 1.21305 0.83039 0.87164 0.85663 1.84991 1.18272 1.37740 1.89469 1.73862 1.14860 1.09370 1.39683 1.21062 0.97604 0.92477 0.92854 0.91528 1.21657 1.00571 0.96520 0.95531 1.21915 0.99285 0.95403 1.00178 1.21669 0.97764 0.96500 0.85679 1.45508 1.37250 1.38962 1.14803 1.20628 0.80164 0.78240 0.90045 1.90671 1.69225 1.51206 1.37435 1.44372 0.98934 1.04729 1.71436 0.70202 1.47757 0.93011 1.07787 1.65537 1.19634 0.95894 0.71225 0.98088 1.21546 1.47007 0.98640 0.92508 0.92265 1.25611 0.94238 0.95957 1.01421 1.69974 1.45068 1.07258 1.32963 0.85452 0.78013 0.78279 0.79387 1.20384 1.20278 1.19159 0.88316 0.90295 0.87345 0.78896 0.73254 0.91551 0.91132 0.86779 0.91205 0.90271 0.87590 0.76453 0.94432 0.91697 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.47 10.08 71.23 0.72 -1.75 16 2 C 0.18 6.58 6.92 41.02 0.28 6.86 16 3 C -0.32 -12.40 9.36 22.26 0.21 -12.19 16 4 C 0.47 18.50 8.07 134.03 1.08 19.58 16 5 N -0.68 -26.94 10.52 -308.92 -3.25 -30.19 16 6 C 0.54 20.96 8.63 180.33 1.56 22.51 16 7 O -0.51 -16.75 12.02 -86.34 -1.04 -17.79 16 8 N -0.62 -23.59 5.78 -450.74 -2.61 -26.19 16 9 C 0.08 2.39 3.00 44.10 0.13 2.52 16 10 H 0.07 2.23 6.73 -2.39 -0.02 2.22 16 11 C -0.10 -2.37 5.63 30.73 0.17 -2.20 16 12 C -0.13 -1.79 6.02 30.68 0.18 -1.60 16 13 C 0.11 1.34 7.17 86.49 0.62 1.96 16 14 N -0.71 -15.50 5.45 -467.31 -2.55 -18.05 16 15 C 0.52 17.07 7.44 87.71 0.65 17.72 16 16 O -0.60 -26.03 17.49 -3.04 -0.05 -26.08 16 17 N -0.47 -17.60 7.39 -54.69 -0.40 -18.01 16 18 H 0.45 14.88 8.96 -213.28 -1.91 12.97 16 19 N -0.35 -13.71 3.64 -337.55 -1.23 -14.94 16 20 C 0.27 11.54 5.93 85.63 0.51 12.05 16 21 C -0.56 -26.49 9.39 25.60 0.24 -26.24 16 22 H 0.06 2.89 7.81 -2.91 -0.02 2.86 16 23 C 0.03 1.44 5.46 84.66 0.46 1.90 16 24 N -0.91 -46.42 13.29 21.45 0.28 -46.14 16 25 Si 0.96 38.81 29.54 68.60 2.03 40.84 16 26 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 28 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 29 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.08 2.20 7.14 -2.39 -0.02 2.18 16 31 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.19 7.54 5.49 -2.91 -0.02 7.53 16 33 H 0.41 10.13 8.98 -74.06 -0.67 9.46 16 34 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 36 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.40 7.76 8.80 -92.71 -0.82 6.95 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 2.82 7.18 -2.39 -0.02 2.80 16 43 H 0.27 13.17 8.31 -92.70 -0.77 12.40 16 Total: -1.00 -69.16 362.20 -4.30 -73.46 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -2.31 Total: 41.97 kcal Atomic # 6 Polarization: 34.30 SS G_CDS: 6.82 Total: 41.12 kcal Atomic # 7 Polarization: -143.77 SS G_CDS: -9.75 Total: -153.52 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.09 Total: -43.87 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -69.16 -4.30 -73.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330703856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.524 kcal (2) G-P(sol) polarization free energy of solvation -69.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds