Wall clock time and date at job start Fri Apr 10 2020 18:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34805 * 125.49911 * 2 1 4 4 C 1.41414 * 108.25914 * 180.27993 * 3 2 1 5 5 N 1.32596 * 126.40548 * 179.75461 * 4 3 2 6 6 C 1.34468 * 119.99406 * 353.71652 * 5 4 3 7 7 O 1.35356 * 119.99672 * 185.33886 * 6 5 4 8 8 N 1.30893 * 120.00446 * 5.33913 * 6 5 4 9 9 C 1.46501 * 120.00097 * 186.95613 * 8 6 5 10 10 H 1.09001 * 109.39751 * 7.48989 * 9 8 6 11 11 C 1.53065 * 109.40180 * 247.66349 * 9 8 6 12 12 C 1.53342 * 108.42822 * 190.97193 * 11 9 8 13 13 C 1.52923 * 108.67480 * 67.52930 * 12 11 9 14 14 N 1.45748 * 110.48678 * 309.24930 * 13 12 11 15 15 C 1.33354 * 124.10783 * 19.07350 * 14 13 12 16 16 O 1.21287 * 118.24703 * 177.77984 * 15 14 13 17 17 N 1.37660 * 107.19456 * 359.73121 * 4 3 2 18 18 H 0.97006 * 126.38704 * 179.97438 * 17 4 3 19 19 N 1.36618 * 125.49448 * 179.81738 * 2 1 3 20 20 C 1.46503 * 125.84380 * 359.97438 * 19 2 1 21 21 C 1.50696 * 109.47036 * 84.71676 * 20 19 2 22 22 H 1.08001 * 120.00185 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00081 * 179.72578 * 21 20 19 24 24 N 1.31515 * 119.99521 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00163 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.46941 * 60.00048 * 25 23 21 27 27 H 1.48496 * 109.46861 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47245 * 299.99755 * 25 23 21 29 29 H 1.08992 * 109.47636 * 270.18153 * 1 2 3 30 30 H 1.09000 * 109.46866 * 30.18084 * 1 2 3 31 31 H 1.09002 * 109.46753 * 150.17250 * 1 2 3 32 32 H 1.08002 * 125.86496 * 0.02562 * 3 2 1 33 33 H 0.96692 * 113.99760 * 176.08067 * 7 6 5 34 34 H 1.08998 * 109.67546 * 310.70693 * 11 9 8 35 35 H 1.09004 * 109.67268 * 71.23358 * 11 9 8 36 36 H 1.08997 * 109.60182 * 187.28904 * 12 11 9 37 37 H 1.09007 * 109.60089 * 307.60916 * 12 11 9 38 38 H 1.08994 * 109.29613 * 69.56490 * 13 12 11 39 39 H 1.08998 * 109.29651 * 189.14154 * 13 12 11 40 40 H 0.96997 * 117.94776 * 199.07861 * 14 13 12 41 41 H 1.09005 * 109.46807 * 324.71704 * 20 19 2 42 42 H 1.08995 * 109.46962 * 204.71656 * 20 19 2 43 43 H 0.97000 * 119.99660 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0975 0.0000 4 6 3.6404 0.6784 -0.0066 5 7 4.7082 1.4644 -0.0131 6 6 4.5627 2.7950 -0.1415 7 8 5.6542 3.5871 -0.2569 8 7 3.3656 3.3243 -0.1549 9 6 3.1984 4.7502 -0.4465 10 1 4.1554 5.1714 -0.7544 11 6 2.7059 5.4719 0.8102 12 6 2.2768 6.8908 0.4176 13 6 1.0335 6.7988 -0.4680 14 7 1.2518 5.8555 -1.5574 15 6 2.2009 4.9187 -1.5564 16 8 2.2617 4.1623 -2.5026 17 7 3.6393 -0.6982 -0.0043 18 1 4.4197 -1.2743 -0.0079 19 7 2.3002 -1.1123 0.0035 20 6 1.8314 -2.5003 0.0085 21 6 1.5462 -2.9392 -1.4046 22 1 1.6985 -2.2528 -2.2244 23 6 1.0958 -4.2187 -1.6515 24 7 0.9146 -5.0559 -0.6536 25 14 0.7416 -4.7625 -3.4031 26 1 1.9805 -4.6555 -4.2147 27 1 0.2723 -6.1714 -3.3986 28 1 -0.3102 -3.8929 -3.9883 29 1 -0.3634 0.0033 1.0275 30 1 -0.3633 0.8884 -0.5166 31 1 -0.3633 -0.8916 -0.5112 32 1 1.9446 2.1209 0.0004 33 1 5.4490 4.5204 -0.4043 34 1 1.8564 4.9352 1.2325 35 1 3.5106 5.5216 1.5439 36 1 2.0449 7.4642 1.3151 37 1 3.0834 7.3785 -0.1297 38 1 0.1872 6.4660 0.1327 39 1 0.8148 7.7819 -0.8850 40 1 0.6704 5.9128 -2.3317 41 1 0.9206 -2.5740 0.6027 42 1 2.5997 -3.1417 0.4401 43 1 0.5981 -5.9562 -0.8273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330703857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:01 Heat of formation + Delta-G solvation = 31.126691 kcal Electronic energy + Delta-G solvation = -27320.334147 eV Core-core repulsion = 23403.060538 eV Total energy + Delta-G solvation = -3917.273609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 5.26 seconds Orbital eigenvalues (eV) -42.25531 -41.33787 -39.80787 -37.34923 -36.72131 -35.33621 -34.76850 -33.87106 -32.65968 -31.82385 -29.30758 -28.73004 -28.30478 -25.46730 -24.80690 -23.69016 -23.06275 -21.42658 -20.90375 -19.94218 -19.02586 -18.87379 -18.42604 -18.02262 -17.40774 -16.83674 -16.63300 -16.39148 -15.99986 -15.60129 -15.39648 -15.14359 -14.95040 -14.63458 -14.44800 -14.34509 -14.25780 -14.04874 -13.75662 -13.59596 -13.26437 -12.97293 -12.90090 -12.73011 -12.53149 -12.29798 -12.22468 -12.16683 -11.91134 -11.48018 -10.85155 -10.76954 -10.40943 -10.35008 -9.98752 -9.88059 -9.56355 -8.46440 -8.04415 -6.54798 0.20594 0.59024 1.38514 1.40722 1.48077 1.53969 1.70310 2.29267 2.37716 2.43682 2.88234 2.93948 3.11808 3.65169 3.77538 3.81301 3.93042 4.05525 4.13505 4.27048 4.35507 4.42431 4.65443 4.78561 4.80629 4.84012 4.90206 4.96272 4.99530 5.02779 5.09839 5.13959 5.21386 5.39752 5.46491 5.53833 5.72629 5.79166 5.98373 6.18560 6.23598 6.41249 6.46661 6.69988 7.18306 7.21278 7.36183 7.81213 8.67121 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.003179 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.187484 B = 8806.121493 C = 9393.875024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.184 3.816 3 C -0.320 4.320 4 C 0.465 3.535 5 N -0.661 5.661 6 C 0.555 3.445 7 O -0.518 6.518 8 N -0.666 5.666 9 C 0.069 3.931 10 H 0.069 0.931 11 C -0.107 4.107 12 C -0.130 4.130 13 C 0.105 3.895 14 N -0.713 5.713 15 C 0.524 3.476 16 O -0.601 6.601 17 N -0.472 5.472 18 H 0.450 0.550 19 N -0.352 5.352 20 C 0.270 3.730 21 C -0.564 4.564 22 H 0.053 0.947 23 C 0.034 3.966 24 N -0.911 5.911 25 Si 0.959 3.041 26 H -0.279 1.279 27 H -0.276 1.276 28 H -0.268 1.268 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.198 0.802 33 H 0.408 0.592 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.400 0.600 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 21.745 5.196 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 C -0.353 4.353 4 C 0.212 3.788 5 N -0.413 5.413 6 C 0.241 3.759 7 O -0.315 6.315 8 N -0.423 5.423 9 C -0.046 4.046 10 H 0.086 0.914 11 C -0.146 4.146 12 C -0.168 4.168 13 C -0.018 4.018 14 N -0.365 5.365 15 C 0.310 3.690 16 O -0.481 6.481 17 N -0.194 5.194 18 H 0.298 0.702 19 N -0.139 5.139 20 C 0.153 3.847 21 C -0.602 4.602 22 H 0.071 0.929 23 C -0.169 4.169 24 N -0.549 5.549 25 Si 0.784 3.216 26 H -0.204 1.204 27 H -0.201 1.201 28 H -0.193 1.193 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.214 0.786 33 H 0.266 0.734 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.236 0.764 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.539 19.828 5.228 20.662 hybrid contribution 0.259 0.194 -1.585 1.618 sum -2.279 20.022 3.643 20.478 Atomic orbital electron populations 1.20739 0.84101 1.05026 1.05211 1.21911 0.95938 0.84715 0.91569 1.22707 0.90203 1.00982 1.21417 1.18759 0.91425 0.82250 0.86381 1.67688 1.27488 0.99958 1.46211 1.20930 0.80346 0.88668 0.85987 1.84666 1.34760 1.23756 1.88349 1.73699 1.18893 1.10494 1.39223 1.21218 0.96337 0.92296 0.94766 0.91392 1.21747 1.02203 0.95583 0.95061 1.21928 0.97660 0.95855 1.01345 1.21687 0.98731 0.93084 0.88267 1.45510 1.33834 1.33996 1.23117 1.20433 0.82188 0.79149 0.87210 1.90728 1.74358 1.44811 1.38220 1.44333 0.99096 1.04646 1.71358 0.70217 1.47784 0.92776 1.07868 1.65491 1.19644 0.96041 0.71158 0.97846 1.21520 1.47357 0.98568 0.92733 0.92850 1.25542 0.94224 0.95874 1.01234 1.69950 1.45002 1.07170 1.32749 0.85572 0.78713 0.77666 0.79603 1.20444 1.20090 1.19262 0.87204 0.87865 0.90390 0.78606 0.73376 0.91241 0.90643 0.86852 0.90494 0.90543 0.87712 0.76433 0.91259 0.94184 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.62 9.92 71.23 0.71 -1.91 16 2 C 0.18 6.72 6.92 41.02 0.28 7.01 16 3 C -0.32 -12.52 9.36 22.26 0.21 -12.31 16 4 C 0.46 19.36 8.07 134.02 1.08 20.44 16 5 N -0.66 -28.57 10.62 -308.93 -3.28 -31.85 16 6 C 0.55 21.85 8.73 180.33 1.58 23.42 16 7 O -0.52 -17.64 13.63 -86.46 -1.18 -18.82 16 8 N -0.67 -23.63 5.78 -450.73 -2.61 -26.23 16 9 C 0.07 1.83 2.86 44.10 0.13 1.96 16 10 H 0.07 1.59 5.45 -2.39 -0.01 1.58 16 11 C -0.11 -1.93 5.63 30.73 0.17 -1.75 16 12 C -0.13 -1.25 6.02 30.68 0.18 -1.07 16 13 C 0.11 1.04 7.17 86.50 0.62 1.66 16 14 N -0.71 -13.71 5.45 -467.33 -2.55 -16.26 16 15 C 0.52 15.45 7.44 87.71 0.65 16.10 16 16 O -0.60 -24.76 17.49 -3.05 -0.05 -24.81 16 17 N -0.47 -18.50 7.39 -54.69 -0.40 -18.90 16 18 H 0.45 15.88 8.96 -213.27 -1.91 13.97 16 19 N -0.35 -14.02 3.64 -337.54 -1.23 -15.25 16 20 C 0.27 11.80 5.71 85.63 0.49 12.29 16 21 C -0.56 -27.75 9.39 25.60 0.24 -27.51 16 22 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 23 C 0.03 1.67 5.46 84.65 0.46 2.14 16 24 N -0.91 -46.76 13.29 21.45 0.28 -46.47 16 25 Si 0.96 40.35 29.54 68.60 2.03 42.37 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.08 2.43 7.81 -2.39 -0.02 2.41 16 32 H 0.20 7.71 5.50 -2.91 -0.02 7.70 16 33 H 0.41 9.81 5.93 -74.06 -0.44 9.37 16 34 H 0.07 1.41 8.13 -2.39 -0.02 1.40 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.08 0.68 8.13 -2.38 -0.02 0.66 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.40 7.12 8.80 -92.71 -0.82 6.30 16 41 H 0.07 2.99 7.90 -2.38 -0.02 2.97 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -72.19 360.53 -4.26 -76.45 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: -2.08 Total: 39.31 kcal Atomic # 6 Polarization: 33.65 SS G_CDS: 6.80 Total: 40.46 kcal Atomic # 7 Polarization: -145.18 SS G_CDS: -9.78 Total: -154.96 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -1.23 Total: -43.63 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Total: -72.19 -4.26 -76.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330703857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.579 kcal (2) G-P(sol) polarization free energy of solvation -72.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.26 seconds