Wall clock time and date at job start Fri Apr 10 2020 18:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00118 * 2 1 4 4 O 1.21284 * 119.99913 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00167 * 179.97438 * 3 2 1 6 6 C 1.53495 * 114.20784 * 180.02562 * 5 3 2 7 7 N 1.47064 * 87.98893 * 220.15201 * 6 5 3 8 8 C 1.34773 * 136.05963 * 207.08890 * 7 6 5 9 9 O 1.21595 * 119.99822 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.40196 * 120.00000 * 180.02562 * 10 8 7 12 12 C 1.40396 * 125.97439 * 0.27024 * 11 10 8 13 13 C 1.35244 * 107.86945 * 180.17767 * 12 11 10 14 14 C 1.50703 * 126.07226 * 179.88542 * 13 12 11 15 15 N 1.34968 * 107.85703 * 359.61998 * 13 12 11 16 16 C 1.46496 * 125.97396 * 180.24284 * 15 13 12 17 17 C 1.50702 * 109.47079 * 90.00325 * 16 15 13 18 18 H 1.08002 * 120.00024 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00327 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99450 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00465 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46776 * 59.99591 * 21 19 17 23 23 H 1.48491 * 109.47249 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46668 * 299.99903 * 21 19 17 25 25 N 1.31217 * 125.97157 * 180.02562 * 11 10 8 26 26 C 1.47071 * 87.88403 * 27.34174 * 7 6 5 27 27 H 1.09000 * 109.46669 * 299.99116 * 1 2 3 28 28 H 1.08998 * 109.47243 * 59.99749 * 1 2 3 29 29 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99715 * 180.02562 * 2 1 3 31 31 H 1.08999 * 113.28328 * 313.07270 * 5 3 2 32 32 H 1.09006 * 113.46644 * 105.36874 * 6 5 3 33 33 H 1.08999 * 113.52078 * 334.94496 * 6 5 3 34 34 H 0.97004 * 119.99938 * 0.02562 * 10 8 7 35 35 H 1.08001 * 126.06931 * 0.03580 * 12 11 10 36 36 H 1.09002 * 109.47152 * 269.68666 * 14 13 12 37 37 H 1.09001 * 109.46980 * 149.68766 * 14 13 12 38 38 H 1.09004 * 109.47113 * 29.68747 * 14 13 12 39 39 H 1.08997 * 109.47352 * 209.99655 * 16 15 13 40 40 H 1.09001 * 109.47699 * 330.00018 * 16 15 13 41 41 H 0.97001 * 120.00075 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.46342 * 87.43574 * 26 7 6 43 43 H 1.09002 * 113.46689 * 217.87836 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.2753 2.5672 0.0011 7 7 5.2790 2.0597 -0.9463 8 6 6.5533 2.3619 -1.2644 9 8 7.1254 3.2673 -0.6886 10 7 7.1936 1.6607 -2.2209 11 6 8.5193 1.9747 -2.5514 12 6 9.2980 2.9856 -1.9658 13 6 10.5128 2.9706 -2.5602 14 6 11.6661 3.8882 -2.2454 15 7 10.5107 1.9840 -3.4812 16 6 11.6303 1.6171 -4.3518 17 6 12.4767 0.5739 -3.6688 18 1 12.2078 0.2200 -2.6845 19 6 13.5945 0.0713 -4.3005 20 7 13.9217 0.5020 -5.4993 21 14 14.6441 -1.2212 -3.4537 22 1 13.8187 -2.4237 -3.1743 23 1 15.7783 -1.5941 -4.3367 24 1 15.1692 -0.6737 -2.1771 25 7 9.2508 1.3723 -3.4591 26 6 4.2783 1.0814 -1.3983 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9499 -0.8401 -0.0004 31 1 4.0764 0.4836 0.7323 32 1 4.6946 2.8542 0.9655 33 1 3.6280 3.3352 -0.4222 34 1 6.7371 0.9387 -2.6805 35 1 8.9822 3.6577 -1.1816 36 1 11.6100 4.7730 -2.8795 37 1 12.6056 3.3674 -2.4305 38 1 11.6168 4.1877 -1.1985 39 1 11.2454 1.2158 -5.2892 40 1 12.2362 2.4999 -4.5561 41 1 14.7079 0.1481 -5.9439 42 1 3.6312 1.4571 -2.1909 43 1 4.7002 0.1025 -1.6263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343531715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:41 Heat of formation + Delta-G solvation = 62.059255 kcal Electronic energy + Delta-G solvation = -26027.769833 eV Core-core repulsion = 22111.837560 eV Total energy + Delta-G solvation = -3915.932273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.32014 -40.54929 -39.45476 -37.85644 -35.08888 -34.76912 -33.37209 -31.58323 -30.97695 -30.20100 -27.58142 -26.53135 -26.41764 -26.23894 -23.90605 -22.79106 -21.14296 -20.41792 -19.73287 -19.13990 -18.25009 -17.57428 -16.67905 -16.53660 -16.31350 -15.87399 -15.61714 -15.41740 -14.87377 -14.75404 -14.22593 -14.00652 -13.83597 -13.54865 -13.28221 -12.92925 -12.83672 -12.80557 -12.64303 -12.45922 -12.30319 -12.09902 -11.65675 -11.39939 -11.22921 -11.09349 -10.82165 -10.47032 -10.45772 -10.23664 -9.99474 -9.67595 -9.65975 -9.54136 -9.00144 -8.63756 -7.90738 -7.40078 -6.24860 -4.32636 2.03041 2.05349 2.59543 2.75313 3.07421 3.23270 3.27086 3.29476 3.34575 3.71559 3.81629 4.03527 4.28733 4.31679 4.46529 4.61443 4.75755 4.90651 4.98941 5.01882 5.08430 5.19155 5.31242 5.35833 5.47309 5.61890 5.73336 5.85161 5.97401 6.12997 6.25624 6.50782 6.62911 6.70972 6.91014 6.94156 7.05167 7.18805 7.52649 7.67651 7.68481 7.89248 7.91283 8.08122 8.55103 8.67788 8.76333 9.33528 10.82207 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.022463 B = 0.002228 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.197392 B =12564.310380 C =13300.460192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.733 5.733 3 C 0.528 3.472 4 O -0.531 6.531 5 C -0.156 4.156 6 C 0.153 3.847 7 N -0.666 5.666 8 C 0.747 3.253 9 O -0.558 6.558 10 N -0.640 5.640 11 C 0.282 3.718 12 C -0.289 4.289 13 C 0.092 3.908 14 C -0.088 4.088 15 N -0.318 5.318 16 C 0.259 3.741 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.274 1.274 25 N -0.323 5.323 26 C 0.117 3.883 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.405 0.595 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.405 0.595 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.268 0.732 42 H 0.090 0.910 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.071 -1.549 10.031 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.384 5.384 3 C 0.313 3.687 4 O -0.407 6.407 5 C -0.178 4.178 6 C 0.029 3.971 7 N -0.407 5.407 8 C 0.449 3.551 9 O -0.432 6.432 10 N -0.289 5.289 11 C 0.029 3.971 12 C -0.320 4.320 13 C -0.039 4.039 14 C -0.147 4.147 15 N -0.100 5.100 16 C 0.141 3.859 17 C -0.575 4.575 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.734 3.266 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.199 1.199 25 N -0.154 5.154 26 C -0.007 4.007 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.239 0.761 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.240 0.760 35 H 0.177 0.823 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.583 -1.014 9.281 24.437 hybrid contribution 0.437 -1.170 0.582 1.378 sum -22.146 -2.185 9.863 24.341 Atomic orbital electron populations 1.21576 0.79319 1.02434 1.02525 1.45811 1.07970 1.08776 1.75883 1.20176 0.89037 0.83756 0.75729 1.90748 1.70017 1.31273 1.48655 1.23235 0.91939 1.01940 1.00726 1.22636 0.85973 0.94294 0.94199 1.48451 1.09301 1.39598 1.43364 1.14811 0.79006 0.81425 0.79838 1.90897 1.64754 1.32250 1.55294 1.41271 1.10941 1.37388 1.39290 1.18637 0.84418 0.96742 0.97340 1.21236 0.93176 1.07189 1.10435 1.21055 0.96903 0.93190 0.92763 1.20378 0.95335 0.97057 1.01911 1.48968 1.09242 1.22805 1.29010 1.19674 0.79738 0.97335 0.89121 1.21295 1.09459 1.22964 1.03768 0.91800 1.24932 0.97198 0.96813 0.94869 1.69912 1.26759 1.43069 1.13217 0.86410 0.79428 0.81504 0.79307 1.20027 1.20977 1.19917 1.77242 0.92611 1.22330 1.23206 1.22900 0.88635 0.94379 0.94819 0.92073 0.92046 0.90501 0.76145 0.85104 0.89403 0.88336 0.76038 0.82274 0.91082 0.89916 0.90608 0.93030 0.92781 0.92212 0.89166 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.33 10.70 59.85 0.64 0.97 16 2 N -0.73 -3.10 5.71 -67.08 -0.38 -3.49 16 3 C 0.53 3.76 7.40 -10.99 -0.08 3.68 16 4 O -0.53 -5.99 15.95 5.55 0.09 -5.90 16 5 C -0.16 -0.94 4.50 -91.12 -0.41 -1.35 16 6 C 0.15 1.40 7.96 -8.51 -0.07 1.33 16 7 N -0.67 -7.43 3.69 -190.85 -0.70 -8.13 16 8 C 0.75 11.86 8.76 -86.93 -0.76 11.10 16 9 O -0.56 -10.85 14.25 5.28 0.08 -10.78 16 10 N -0.64 -10.44 5.45 -15.51 -0.08 -10.53 16 11 C 0.28 5.89 8.11 -154.36 -1.25 4.64 16 12 C -0.29 -6.15 9.52 -39.84 -0.38 -6.53 16 13 C 0.09 1.99 6.93 -82.28 -0.57 1.42 16 14 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 15 N -0.32 -7.63 3.59 -58.33 -0.21 -7.84 16 16 C 0.26 6.67 5.81 -5.20 -0.03 6.64 16 17 C -0.54 -14.78 9.39 -34.44 -0.32 -15.10 16 18 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 21 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 N -0.32 -7.55 12.59 31.44 0.40 -7.15 16 26 C 0.12 0.78 7.87 -8.37 -0.07 0.71 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.40 0.57 8.83 -40.82 -0.36 0.21 16 31 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.96 7.46 -51.93 -0.39 0.58 16 34 H 0.41 5.35 8.54 -40.82 -0.35 5.00 16 35 H 0.16 3.35 5.91 -52.49 -0.31 3.04 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 42 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 371.27 15.07 5.59 5.59 Total: -1.00 -36.31 371.27 -8.53 -44.84 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.97 Total: 3.64 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -3.04 Total: 8.00 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.25 Total: -61.44 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.16 Total: -16.68 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.31 -8.53 -44.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343531715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.898 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds