Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47203 * 240.00112 * 3 2 1 5 5 H 1.48501 * 109.46884 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46987 * 119.99887 * 3 2 1 7 7 C 1.37874 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47066 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46722 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99660 * 180.02562 * 11 10 9 13 13 O 1.21595 * 120.00327 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00149 * 179.97438 * 12 11 10 15 15 C 1.40840 * 120.00479 * 180.02562 * 14 12 11 16 16 C 1.40244 * 126.07381 * 359.97438 * 15 14 12 17 17 N 1.30836 * 108.34101 * 179.73835 * 16 15 14 18 18 N 1.40073 * 108.36612 * 0.44186 * 17 16 15 19 19 C 1.46491 * 126.06034 * 179.81953 * 18 17 16 20 20 C 1.50702 * 109.46957 * 304.68694 * 19 18 17 21 21 O 1.21283 * 120.00262 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99928 * 179.72354 * 20 19 18 23 23 C 1.46499 * 120.00199 * 180.27479 * 22 20 19 24 24 C 1.53001 * 117.50348 * 223.62517 * 23 22 20 25 25 C 1.52995 * 59.99914 * 252.50840 * 24 23 22 26 26 C 1.35726 * 126.07994 * 180.02562 * 15 14 12 27 27 H 0.97002 * 120.00376 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47080 * 60.00539 * 9 7 2 29 29 H 1.08999 * 109.47585 * 300.00536 * 9 7 2 30 30 H 1.08996 * 109.46518 * 60.00478 * 10 9 7 31 31 H 1.08999 * 109.47083 * 300.00276 * 10 9 7 32 32 H 0.97005 * 120.00689 * 0.02562 * 11 10 9 33 33 H 0.97000 * 119.99835 * 0.02562 * 14 12 11 34 34 H 1.08003 * 125.82342 * 0.02562 * 16 15 14 35 35 H 1.09004 * 109.47166 * 184.68960 * 19 18 17 36 36 H 1.08994 * 109.47507 * 64.68666 * 19 18 17 37 37 H 0.97000 * 120.00317 * 0.28382 * 22 20 19 38 38 H 1.09006 * 115.54765 * 9.33387 * 23 22 20 39 39 H 1.09000 * 117.49769 * 359.97438 * 24 23 22 40 40 H 1.08999 * 117.49995 * 145.01974 * 24 23 22 41 41 H 1.08999 * 117.50298 * 252.50709 * 25 24 23 42 42 H 1.09008 * 117.51520 * 107.47929 * 25 24 23 43 43 H 1.08000 * 126.21482 * 359.97179 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5128 -4.9307 -0.0024 12 6 2.1867 -6.0979 -0.0031 13 8 3.4027 -6.0979 -0.0027 14 7 1.5129 -7.2652 -0.0031 15 6 2.2170 -8.4849 -0.0032 16 6 3.6116 -8.6334 -0.0038 17 7 3.8895 -9.9118 0.0019 18 7 2.6843 -10.6256 -0.0039 19 6 2.5457 -12.0839 -0.0040 20 6 3.3090 -12.6608 -1.1684 21 8 3.9100 -11.9262 -1.9234 22 7 3.3289 -13.9937 -1.3671 23 6 4.0758 -14.5551 -2.4954 24 6 3.4011 -15.6612 -3.3091 25 6 4.5618 -16.0005 -2.3719 26 6 1.6667 -9.7256 -0.0038 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 2.8726 -3.6046 0.8877 31 1 2.8714 -3.6039 -0.8922 32 1 0.5428 -4.9308 -0.0024 33 1 0.5429 -7.2652 -0.0031 34 1 4.3329 -7.8295 -0.0039 35 1 1.4921 -12.3488 -0.0933 36 1 2.9441 -12.4869 0.9270 37 1 2.8484 -14.5814 -0.7632 38 1 4.7146 -13.8534 -3.0320 39 1 2.4016 -15.9716 -3.0047 40 1 3.5958 -15.6875 -4.3813 41 1 5.5201 -16.2500 -2.8274 42 1 4.3260 -16.5338 -1.4509 43 1 0.6114 -9.9555 -0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345269964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = 48.614169 kcal Electronic energy + Delta-G solvation = -25124.356286 eV Core-core repulsion = 21207.840990 eV Total energy + Delta-G solvation = -3916.515295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -41.37944 -40.13407 -39.34435 -37.54317 -35.17918 -34.41213 -33.61672 -32.93965 -32.56654 -29.96710 -29.11728 -27.17258 -24.66825 -23.03887 -22.95671 -21.98085 -21.45915 -21.03078 -20.78143 -20.13287 -17.89649 -17.78917 -17.59900 -16.79377 -16.34370 -16.13459 -15.48701 -15.28768 -15.03221 -14.78724 -14.53083 -14.28748 -14.23372 -13.81237 -13.39630 -13.25978 -13.23266 -12.89590 -12.70665 -12.25539 -12.16743 -11.86372 -11.18007 -11.09488 -11.04996 -10.82397 -10.66318 -10.63105 -10.36955 -10.25242 -9.85945 -9.54461 -9.35428 -9.28263 -9.25752 -8.56369 -8.35726 -7.56821 -6.07240 -4.09831 1.69237 2.06328 2.10602 2.63674 2.86507 3.04826 3.33839 3.34906 3.37338 3.41408 3.72022 4.07510 4.19406 4.24792 4.38689 4.41503 4.42347 4.59944 4.61275 4.72726 5.05228 5.15541 5.23671 5.30016 5.36579 5.49546 5.58320 5.65248 5.93484 6.29662 6.31866 6.41060 6.72883 6.78919 6.93356 6.98555 7.04906 7.19480 7.57000 7.64628 7.70725 7.75599 7.91694 8.25779 8.38700 8.91207 8.97137 9.54914 11.04343 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.043820 B = 0.001627 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.824013 B =17202.803043 C =17357.877878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.733 5.733 12 C 0.702 3.298 13 O -0.584 6.584 14 N -0.666 5.666 15 C 0.044 3.956 16 C 0.054 3.946 17 N -0.260 5.260 18 N -0.373 5.373 19 C 0.130 3.870 20 C 0.500 3.500 21 O -0.498 6.498 22 N -0.705 5.705 23 C 0.081 3.919 24 C -0.193 4.193 25 C -0.188 4.188 26 C -0.002 4.002 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.395 0.605 33 H 0.404 0.596 34 H 0.209 0.791 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.401 0.599 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 -34.544 -0.669 34.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.386 5.386 12 C 0.402 3.598 13 O -0.462 6.462 14 N -0.314 5.314 15 C -0.062 4.062 16 C -0.135 4.135 17 N -0.080 5.080 18 N -0.160 5.160 19 C 0.004 3.996 20 C 0.284 3.716 21 O -0.370 6.370 22 N -0.358 5.358 23 C -0.025 4.025 24 C -0.232 4.232 25 C -0.227 4.227 26 C -0.148 4.148 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.228 0.772 33 H 0.238 0.762 34 H 0.225 0.775 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.236 0.764 38 H 0.156 0.844 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.551 -34.713 -1.209 34.769 hybrid contribution -1.665 1.084 0.248 2.002 sum -0.114 -33.629 -0.961 33.643 Atomic orbital electron populations 1.69943 1.06088 1.26952 1.50390 1.24985 0.94885 0.99382 0.94979 0.86567 0.79508 0.82627 0.78805 1.20103 1.21287 1.20100 1.21016 0.93274 0.90342 1.51382 0.92215 1.19331 0.94262 0.91041 0.97849 1.21650 0.95684 0.80067 1.00911 1.45507 1.09953 1.05102 1.78065 1.15938 0.85555 0.80116 0.78221 1.90772 1.11665 1.85979 1.57798 1.41970 1.08986 1.02422 1.77999 1.17486 0.91970 0.84698 1.12017 1.24654 0.95123 0.93989 0.99770 1.77483 1.04056 1.04550 1.21948 1.47520 1.04129 1.04018 1.60339 1.21244 1.02480 0.77324 0.98537 1.20752 0.81977 0.82152 0.86714 1.90834 1.41889 1.58635 1.45647 1.45295 1.53349 1.06908 1.30230 1.21602 0.98939 0.90662 0.91291 1.23438 0.97741 1.03322 0.98682 1.23386 0.99550 0.97794 1.01949 1.21631 0.94353 0.88034 1.10759 0.92829 0.95929 0.95925 0.92519 0.92528 0.77224 0.76161 0.77461 0.85854 0.86922 0.76414 0.84395 0.88442 0.87894 0.87763 0.88383 0.80835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.14 2.97 5.61 -4.04 -0.02 2.94 16 11 N -0.73 -12.72 5.56 -65.22 -0.36 -13.09 16 12 C 0.70 12.31 8.54 -86.91 -0.74 11.57 16 13 O -0.58 -12.28 13.50 5.28 0.07 -12.21 16 14 N -0.67 -8.94 5.48 -14.39 -0.08 -9.02 16 15 C 0.04 0.62 6.90 -83.86 -0.58 0.04 16 16 C 0.05 0.89 10.84 -17.22 -0.19 0.70 16 17 N -0.26 -4.09 11.65 30.70 0.36 -3.74 16 18 N -0.37 -4.29 3.42 -62.21 -0.21 -4.50 16 19 C 0.13 0.82 7.00 -5.20 -0.04 0.79 16 20 C 0.50 4.48 7.86 -10.98 -0.09 4.39 16 21 O -0.50 -7.34 15.29 5.55 0.08 -7.26 16 22 N -0.71 -3.81 5.57 -53.81 -0.30 -4.11 16 23 C 0.08 0.50 6.43 -67.93 -0.44 0.06 16 24 C -0.19 -0.82 10.46 -26.73 -0.28 -1.10 16 25 C -0.19 -0.74 10.45 -26.74 -0.28 -1.02 16 26 C 0.00 -0.03 11.52 -16.67 -0.19 -0.22 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.39 5.75 8.49 -40.82 -0.35 5.41 16 33 H 0.40 3.87 8.84 -40.82 -0.36 3.51 16 34 H 0.21 3.78 5.91 -52.48 -0.31 3.47 16 35 H 0.12 0.25 8.07 -51.93 -0.42 -0.17 16 36 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.40 0.70 8.83 -40.82 -0.36 0.34 16 38 H 0.14 1.18 7.40 -51.93 -0.38 0.79 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.28 8.14 -51.92 -0.42 -0.15 16 43 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -38.42 374.80 -8.42 -46.84 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.95 Total: 5.21 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.39 Total: 5.12 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.14 Total: -59.79 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.16 Total: -19.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.42 -8.42 -46.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345269964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.456 kcal (2) G-P(sol) polarization free energy of solvation -38.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds