Wall clock time and date at job start Fri Apr 10 2020 18:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47203 * 240.00112 * 3 2 1 5 5 H 1.48501 * 109.46884 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.46987 * 119.99887 * 3 2 1 7 7 C 1.37874 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99904 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47066 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46722 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99660 * 180.02562 * 11 10 9 13 13 O 1.21595 * 120.00327 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00149 * 179.97438 * 12 11 10 15 15 C 1.40840 * 120.00479 * 180.02562 * 14 12 11 16 16 C 1.40244 * 126.07381 * 359.97438 * 15 14 12 17 17 N 1.30836 * 108.34101 * 179.73835 * 16 15 14 18 18 N 1.40073 * 108.36612 * 0.44186 * 17 16 15 19 19 C 1.46491 * 126.06034 * 179.81953 * 18 17 16 20 20 C 1.50702 * 109.46957 * 304.68694 * 19 18 17 21 21 O 1.21283 * 120.00262 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99928 * 179.72354 * 20 19 18 23 23 C 1.46499 * 120.00199 * 180.27479 * 22 20 19 24 24 C 1.53001 * 117.50348 * 223.62517 * 23 22 20 25 25 C 1.52995 * 59.99914 * 252.50840 * 24 23 22 26 26 C 1.35726 * 126.07994 * 180.02562 * 15 14 12 27 27 H 0.97002 * 120.00376 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47080 * 60.00539 * 9 7 2 29 29 H 1.08999 * 109.47585 * 300.00536 * 9 7 2 30 30 H 1.08996 * 109.46518 * 60.00478 * 10 9 7 31 31 H 1.08999 * 109.47083 * 300.00276 * 10 9 7 32 32 H 0.97005 * 120.00689 * 0.02562 * 11 10 9 33 33 H 0.97000 * 119.99835 * 0.02562 * 14 12 11 34 34 H 1.08003 * 125.82342 * 0.02562 * 16 15 14 35 35 H 1.09004 * 109.47166 * 184.68960 * 19 18 17 36 36 H 1.08994 * 109.47507 * 64.68666 * 19 18 17 37 37 H 0.97000 * 120.00317 * 0.28382 * 22 20 19 38 38 H 1.09006 * 115.54765 * 9.33387 * 23 22 20 39 39 H 1.09000 * 117.49769 * 359.97438 * 24 23 22 40 40 H 1.08999 * 117.49995 * 145.01974 * 24 23 22 41 41 H 1.08999 * 117.50298 * 252.50709 * 25 24 23 42 42 H 1.09008 * 117.51520 * 107.47929 * 25 24 23 43 43 H 1.08000 * 126.21482 * 359.97179 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5128 -4.9307 -0.0024 12 6 2.1867 -6.0979 -0.0031 13 8 3.4027 -6.0979 -0.0027 14 7 1.5129 -7.2652 -0.0031 15 6 2.2170 -8.4849 -0.0032 16 6 3.6116 -8.6334 -0.0038 17 7 3.8895 -9.9118 0.0019 18 7 2.6843 -10.6256 -0.0039 19 6 2.5457 -12.0839 -0.0040 20 6 3.3090 -12.6608 -1.1684 21 8 3.9100 -11.9262 -1.9234 22 7 3.3289 -13.9937 -1.3671 23 6 4.0758 -14.5551 -2.4954 24 6 3.4011 -15.6612 -3.3091 25 6 4.5618 -16.0005 -2.3719 26 6 1.6667 -9.7256 -0.0038 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 2.8726 -3.6046 0.8877 31 1 2.8714 -3.6039 -0.8922 32 1 0.5428 -4.9308 -0.0024 33 1 0.5429 -7.2652 -0.0031 34 1 4.3329 -7.8295 -0.0039 35 1 1.4921 -12.3488 -0.0933 36 1 2.9441 -12.4869 0.9270 37 1 2.8484 -14.5814 -0.7632 38 1 4.7146 -13.8534 -3.0320 39 1 2.4016 -15.9716 -3.0047 40 1 3.5958 -15.6875 -4.3813 41 1 5.5201 -16.2500 -2.8274 42 1 4.3260 -16.5338 -1.4509 43 1 0.6114 -9.9555 -0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345269964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:03 Heat of formation + Delta-G solvation = 17.578249 kcal Electronic energy + Delta-G solvation = -25125.702104 eV Core-core repulsion = 21207.840990 eV Total energy + Delta-G solvation = -3917.861114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 7.75 seconds Orbital eigenvalues (eV) -42.36518 -40.99246 -40.49289 -38.06915 -36.74225 -35.73044 -34.83268 -34.29309 -33.45495 -31.60115 -30.26580 -28.12737 -26.54672 -23.74365 -23.38803 -23.27670 -22.54310 -22.12605 -21.81759 -21.25967 -19.15761 -18.67712 -18.38312 -18.30713 -17.42044 -16.96026 -16.74003 -16.49272 -16.32867 -15.75874 -15.63919 -15.50933 -15.27920 -15.05212 -14.79997 -14.43900 -14.24220 -13.79011 -13.67749 -13.44158 -13.18848 -12.92440 -12.52476 -12.51599 -12.35683 -12.25555 -11.86571 -11.68154 -11.62199 -11.50831 -11.46162 -11.17559 -11.11212 -10.57319 -10.28573 -10.03919 -9.79031 -8.61241 -8.21532 -6.31320 0.80647 1.30158 1.43882 1.45990 1.46143 1.53822 1.65599 1.82137 2.09183 2.42327 2.43588 2.96648 3.13435 3.37231 3.58037 3.76303 3.81122 3.99054 4.04575 4.05963 4.21016 4.24684 4.47140 4.56013 4.65571 4.68149 4.76008 4.79284 4.90294 5.01582 5.16686 5.19894 5.35135 5.46109 5.54674 5.63342 5.80310 5.82071 6.02063 6.09405 6.20274 6.48062 6.69157 6.81457 7.13723 7.19368 7.37699 7.59393 8.90024 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.043820 B = 0.001627 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.824013 B =17202.803043 C =17357.877878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.726 5.726 12 C 0.698 3.302 13 O -0.624 6.624 14 N -0.643 5.643 15 C 0.002 3.998 16 C 0.023 3.977 17 N -0.297 5.297 18 N -0.365 5.365 19 C 0.122 3.878 20 C 0.495 3.505 21 O -0.570 6.570 22 N -0.683 5.683 23 C 0.049 3.951 24 C -0.181 4.181 25 C -0.172 4.172 26 C 0.041 3.959 27 H 0.265 0.735 28 H 0.010 0.990 29 H 0.012 0.988 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.410 0.590 33 H 0.425 0.575 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.143 0.857 37 H 0.423 0.577 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 -37.334 0.086 37.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.381 5.381 12 C 0.398 3.602 13 O -0.505 6.505 14 N -0.292 5.292 15 C -0.103 4.103 16 C -0.165 4.165 17 N -0.119 5.119 18 N -0.151 5.151 19 C -0.002 4.002 20 C 0.281 3.719 21 O -0.447 6.447 22 N -0.336 5.336 23 C -0.057 4.057 24 C -0.219 4.219 25 C -0.210 4.210 26 C -0.106 4.106 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.246 0.754 33 H 0.263 0.737 34 H 0.193 0.807 35 H 0.199 0.801 36 H 0.161 0.839 37 H 0.261 0.739 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.703 -37.625 -0.431 37.634 hybrid contribution -1.003 1.680 -0.010 1.957 sum -1.706 -35.945 -0.441 35.988 Atomic orbital electron populations 1.70043 1.07437 1.27991 1.50988 1.25825 0.95782 1.02924 0.94430 0.85528 0.78329 0.78311 0.79053 1.19532 1.20528 1.19399 1.21448 0.93614 0.91989 1.51591 0.92381 1.19133 0.94233 0.91472 0.96535 1.21103 0.94667 0.80854 0.99750 1.45118 1.10498 1.04011 1.78444 1.16042 0.85116 0.80960 0.78069 1.90772 1.13660 1.86665 1.59418 1.41545 1.09779 1.01031 1.76889 1.17692 0.91190 0.85934 1.15485 1.24304 0.96327 0.93995 1.01846 1.77399 1.06672 1.04504 1.23352 1.48002 1.03122 1.06079 1.57894 1.21889 1.05733 0.74151 0.98419 1.21277 0.81285 0.82720 0.86632 1.90826 1.45129 1.60389 1.48343 1.45094 1.52360 1.06184 1.29954 1.21531 1.00448 0.91179 0.92566 1.23495 0.98662 1.01145 0.98637 1.23464 0.99618 0.95359 1.02565 1.22467 0.96343 0.86125 1.05669 0.92575 0.97162 0.97013 0.93615 0.93845 0.75439 0.73661 0.80726 0.80056 0.83909 0.73859 0.87870 0.86766 0.88066 0.87708 0.86449 0.74941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.20 5.09 29.85 0.15 1.36 16 10 C 0.16 7.04 5.61 86.38 0.48 7.52 16 11 N -0.73 -25.47 5.56 -478.53 -2.66 -28.13 16 12 C 0.70 24.97 8.54 179.05 1.53 26.50 16 13 O -0.62 -27.73 13.50 -4.01 -0.05 -27.79 16 14 N -0.64 -16.64 5.48 -317.70 -1.74 -18.38 16 15 C 0.00 0.05 6.90 37.60 0.26 0.31 16 16 C 0.02 0.79 10.84 85.33 0.92 1.71 16 17 N -0.30 -9.58 11.65 -56.77 -0.66 -10.24 16 18 N -0.37 -7.48 3.42 -350.73 -1.20 -8.68 16 19 C 0.12 1.04 7.00 85.64 0.60 1.64 16 20 C 0.49 8.09 7.86 87.66 0.69 8.78 16 21 O -0.57 -17.31 15.29 -3.04 -0.05 -17.36 16 22 N -0.68 -5.88 5.57 -442.53 -2.46 -8.34 16 23 C 0.05 0.57 6.43 44.99 0.29 0.86 16 24 C -0.18 -1.18 10.46 30.59 0.32 -0.86 16 25 C -0.17 -1.01 10.45 30.59 0.32 -0.69 16 26 C 0.04 0.72 11.52 83.49 0.96 1.68 16 27 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.41 11.74 8.49 -92.70 -0.79 10.95 16 33 H 0.43 7.07 8.84 -92.71 -0.82 6.25 16 34 H 0.18 7.13 5.91 -2.91 -0.02 7.11 16 35 H 0.18 -0.54 8.07 -2.38 -0.02 -0.56 16 36 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.42 -0.17 8.83 -92.71 -0.82 -0.99 16 38 H 0.10 1.96 7.40 -2.38 -0.02 1.94 16 39 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 43 H 0.23 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -90.85 374.80 -0.64 -91.50 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -1.35 Total: 16.13 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 7.22 Total: 19.15 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -8.44 Total: -127.67 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.10 Total: -45.14 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -90.85 -0.64 -91.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345269964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.073 kcal (2) G-P(sol) polarization free energy of solvation -90.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.75 seconds