Wall clock time and date at job start Fri Apr 10 2020 18:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29947 * 126.28845 * 2 1 4 4 O 1.21305 * 110.24880 * 180.02562 * 3 2 1 5 5 C 1.33640 * 109.81138 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.54984 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47103 * 195.02303 * 6 5 4 8 8 C 1.53002 * 109.47389 * 75.02293 * 6 5 4 9 9 N 1.46906 * 109.47140 * 315.02202 * 6 5 4 10 10 C 1.46904 * 111.00071 * 205.00045 * 9 6 5 11 11 C 1.50700 * 109.47105 * 180.02562 * 10 9 6 12 12 O 1.21281 * 119.99580 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99763 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99564 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.46702 * 90.00178 * 14 13 11 16 16 H 1.08005 * 120.00365 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99938 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99473 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00086 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46678 * 89.99862 * 19 17 15 21 21 H 1.48493 * 109.46837 * 209.99794 * 19 17 15 22 22 H 1.48499 * 109.47301 * 330.00110 * 19 17 15 23 23 C 1.46491 * 120.00307 * 359.97438 * 13 11 10 24 24 C 1.52999 * 109.47112 * 90.00038 * 23 13 11 25 25 C 1.47204 * 109.47281 * 180.02562 * 24 23 13 26 26 N 9.91806 * 131.32679 * 203.53821 * 2 1 3 27 27 N 1.31127 * 106.89892 * 0.22596 * 5 4 3 28 28 H 1.08996 * 109.46969 * 89.97475 * 1 2 3 29 29 H 1.08997 * 109.46914 * 209.97424 * 1 2 3 30 30 H 1.08999 * 109.46649 * 329.97599 * 1 2 3 31 31 H 1.09004 * 109.47006 * 300.00069 * 8 6 5 32 32 H 1.09002 * 109.47097 * 60.00051 * 8 6 5 33 33 H 1.09001 * 109.47142 * 180.02562 * 8 6 5 34 34 H 1.00897 * 110.99665 * 328.95531 * 9 6 5 35 35 H 1.08999 * 109.46647 * 300.00163 * 10 9 6 36 36 H 1.08996 * 109.46868 * 59.99743 * 10 9 6 37 37 H 1.08998 * 109.47043 * 209.99493 * 14 13 11 38 38 H 1.09000 * 109.47309 * 330.00334 * 14 13 11 39 39 H 0.97006 * 119.99262 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47151 * 210.00155 * 23 13 11 41 41 H 1.09005 * 109.47219 * 330.00082 * 23 13 11 42 42 H 1.08998 * 109.47209 * 300.00082 * 24 23 13 43 43 H 1.08995 * 109.47253 * 60.00452 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7969 -1.4371 -0.0014 7 1 4.5648 -2.4684 -0.2673 8 6 5.4289 -1.3995 1.3915 9 7 5.7381 -0.8787 -0.9813 10 6 6.6801 -1.9039 -1.4500 11 6 7.6280 -1.2951 -2.4510 12 8 7.5282 -0.1228 -2.7454 13 7 8.5858 -2.0537 -3.0198 14 6 9.5069 -1.4620 -3.9934 15 6 10.7160 -0.9197 -3.2757 16 1 10.7906 -1.0067 -2.2017 17 6 11.7270 -0.3125 -3.9901 18 7 11.6362 -0.2070 -5.2978 19 14 13.2254 0.3603 -3.1004 20 1 14.2631 -0.6979 -3.0088 21 1 13.7670 1.5212 -3.8514 22 1 12.8371 0.7924 -1.7337 23 6 8.7058 -3.4698 -2.6647 24 6 7.8407 -4.3075 -3.6085 25 6 7.9609 -5.7304 -3.2513 26 7 8.0564 -6.8283 -2.9744 27 7 2.3030 -1.0841 -0.0046 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3632 0.8898 0.5142 31 1 5.6610 -0.3683 1.6575 32 1 4.7305 -1.8139 2.1187 33 1 6.3455 -1.9893 1.3906 34 1 5.2466 -0.4581 -1.7557 35 1 7.2463 -2.2913 -0.6030 36 1 6.1275 -2.7172 -1.9203 37 1 9.8196 -2.2239 -4.7074 38 1 9.0050 -0.6520 -4.5228 39 1 12.3473 0.2206 -5.8003 40 1 9.7469 -3.7800 -2.7546 41 1 8.3704 -3.6167 -1.6380 42 1 6.7997 -3.9973 -3.5186 43 1 8.1762 -4.1607 -4.6351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348095177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:23 Heat of formation + Delta-G solvation = 66.526311 kcal Electronic energy + Delta-G solvation = -26470.951302 eV Core-core repulsion = 22555.212735 eV Total energy + Delta-G solvation = -3915.738567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -45.80702 -39.49482 -37.32948 -36.82064 -36.23496 -35.25757 -33.21592 -32.80349 -30.90571 -30.71208 -29.35495 -27.99844 -26.18974 -24.45427 -24.03474 -23.50206 -22.42898 -20.81113 -18.83300 -18.32201 -17.92908 -17.51419 -16.70003 -16.51534 -16.31260 -15.79642 -15.23336 -14.77412 -14.67063 -14.31011 -14.17247 -14.09543 -13.90310 -13.60164 -13.35004 -13.03338 -12.81256 -12.67374 -12.55541 -12.47942 -12.28021 -12.19360 -12.02291 -11.80269 -11.62936 -11.56836 -11.29875 -11.26675 -11.01608 -10.88525 -10.63407 -10.20037 -10.16401 -9.72556 -9.12589 -8.72626 -8.48236 -7.89129 -6.09952 -4.14397 0.88646 1.93154 2.52234 2.67688 2.76123 3.08981 3.23565 3.28656 3.36335 3.40533 3.53786 3.74812 3.97693 4.21306 4.41635 4.48965 4.73030 4.83978 4.87958 4.97306 5.03307 5.05738 5.09942 5.18659 5.22305 5.25433 5.32532 5.41355 5.44577 5.52026 5.59542 5.70379 5.76930 5.95196 6.01608 6.45848 6.90908 7.00682 7.32004 7.39546 7.52596 7.86195 7.94020 8.15286 8.20444 8.80963 8.95056 9.51348 10.98238 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.003095 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.246163 B = 9044.220241 C =10637.089588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.162 3.838 3 N -0.384 5.384 4 O 0.098 5.902 5 C 0.184 3.816 6 C 0.181 3.819 7 H 0.092 0.908 8 C -0.144 4.144 9 N -0.661 5.661 10 C 0.036 3.964 11 C 0.507 3.493 12 O -0.515 6.515 13 N -0.597 5.597 14 C 0.246 3.754 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.117 3.883 24 C -0.051 4.051 25 C 0.216 3.784 26 N -0.444 5.444 27 N -0.481 5.481 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.358 0.642 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.530 -5.479 9.676 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 N -0.091 5.091 4 O 0.039 5.961 5 C -0.037 4.037 6 C 0.070 3.930 7 H 0.110 0.890 8 C -0.202 4.202 9 N -0.296 5.296 10 C -0.096 4.096 11 C 0.292 3.708 12 O -0.390 6.390 13 N -0.330 5.330 14 C 0.127 3.873 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.010 4.010 24 C -0.092 4.092 25 C -0.102 4.102 26 N -0.122 5.122 27 N -0.216 5.216 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.178 0.822 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.564 -5.616 10.210 21.078 hybrid contribution 0.478 0.179 -0.332 0.609 sum -17.086 -5.437 9.878 20.471 Atomic orbital electron populations 1.20130 0.82900 1.04603 1.04346 1.25921 1.00623 0.83516 1.00979 1.74695 0.89546 1.23964 1.20847 1.85380 1.21859 1.24342 1.64563 1.28780 0.96512 0.82510 0.95915 1.20129 0.82242 0.93923 0.96746 0.89039 1.21901 1.01232 1.04466 0.92643 1.60271 1.18906 1.31295 1.19162 1.22076 0.95116 0.93214 0.99206 1.20069 0.81700 0.86965 0.82048 1.90728 1.71333 1.15564 1.61358 1.48206 1.32550 1.07920 1.44299 1.19355 0.87068 0.94324 0.86550 1.21410 1.02925 1.38319 0.94030 0.92292 1.24917 0.98542 0.95692 0.94839 1.69918 1.33757 1.43898 1.05730 0.86513 0.82552 0.78611 0.79872 1.20697 1.21138 1.19790 1.21313 1.01202 0.81760 0.96692 1.19908 1.03600 0.81911 1.03801 1.29112 0.92993 0.94941 0.93162 1.81229 1.08957 1.12790 1.09174 1.71886 0.99533 1.29631 1.20567 0.89301 0.89076 0.89494 0.90591 0.91716 0.90188 0.82154 0.87717 0.92227 0.94712 0.93552 0.92671 0.88616 0.90648 0.87758 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.16 1.81 8.22 -156.37 -1.28 0.53 16 3 N -0.38 -5.00 12.16 30.90 0.38 -4.62 16 4 O 0.10 1.27 11.31 18.11 0.20 1.48 16 5 C 0.18 2.06 7.00 -13.06 -0.09 1.97 16 6 C 0.18 1.66 3.16 -68.86 -0.22 1.44 16 7 H 0.09 0.68 7.80 -51.93 -0.40 0.28 16 8 C -0.14 -1.15 9.40 37.16 0.35 -0.80 16 9 N -0.66 -7.68 5.93 -109.21 -0.65 -8.33 16 10 C 0.04 0.40 4.52 -4.97 -0.02 0.37 16 11 C 0.51 8.55 7.71 -10.99 -0.08 8.46 16 12 O -0.52 -11.35 15.78 5.56 0.09 -11.26 16 13 N -0.60 -10.09 2.46 -175.06 -0.43 -10.52 16 14 C 0.25 5.59 5.16 -5.19 -0.03 5.56 16 15 C -0.53 -13.74 9.39 -34.44 -0.32 -14.07 16 16 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 19 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.12 1.38 5.17 -4.05 -0.02 1.36 16 24 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 25 C 0.22 2.39 15.43 -20.75 -0.32 2.07 16 26 N -0.44 -6.14 18.54 42.16 0.78 -5.36 16 27 N -0.48 -5.58 11.55 -9.87 -0.11 -5.69 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.56 7.45 -51.93 -0.39 0.18 16 34 H 0.36 4.52 8.05 -39.29 -0.32 4.21 16 35 H 0.10 0.98 6.70 -51.93 -0.35 0.63 16 36 H 0.06 0.48 7.10 -51.93 -0.37 0.11 16 37 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 40 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 41 H 0.08 0.70 6.44 -51.93 -0.33 0.36 16 42 H 0.10 0.74 7.22 -51.93 -0.37 0.36 16 43 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -34.28 378.30 -6.10 -40.39 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.84 Total: -1.09 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.94 Total: 7.80 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.70 Total: -58.99 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.29 Total: -9.78 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.28 -6.10 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348095177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.912 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds