Wall clock time and date at job start Fri Apr 10 2020 18:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29947 * 126.28845 * 2 1 4 4 O 1.21305 * 110.24880 * 180.02562 * 3 2 1 5 5 C 1.33640 * 109.81138 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.54984 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47103 * 195.02303 * 6 5 4 8 8 C 1.53002 * 109.47389 * 75.02293 * 6 5 4 9 9 N 1.46906 * 109.47140 * 315.02202 * 6 5 4 10 10 C 1.46904 * 111.00071 * 205.00045 * 9 6 5 11 11 C 1.50700 * 109.47105 * 180.02562 * 10 9 6 12 12 O 1.21281 * 119.99580 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99763 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99564 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.46702 * 90.00178 * 14 13 11 16 16 H 1.08005 * 120.00365 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99938 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99473 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00086 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46678 * 89.99862 * 19 17 15 21 21 H 1.48493 * 109.46837 * 209.99794 * 19 17 15 22 22 H 1.48499 * 109.47301 * 330.00110 * 19 17 15 23 23 C 1.46491 * 120.00307 * 359.97438 * 13 11 10 24 24 C 1.52999 * 109.47112 * 90.00038 * 23 13 11 25 25 C 1.47204 * 109.47281 * 180.02562 * 24 23 13 26 26 N 9.91806 * 131.32679 * 203.53821 * 2 1 3 27 27 N 1.31127 * 106.89892 * 0.22596 * 5 4 3 28 28 H 1.08996 * 109.46969 * 89.97475 * 1 2 3 29 29 H 1.08997 * 109.46914 * 209.97424 * 1 2 3 30 30 H 1.08999 * 109.46649 * 329.97599 * 1 2 3 31 31 H 1.09004 * 109.47006 * 300.00069 * 8 6 5 32 32 H 1.09002 * 109.47097 * 60.00051 * 8 6 5 33 33 H 1.09001 * 109.47142 * 180.02562 * 8 6 5 34 34 H 1.00897 * 110.99665 * 328.95531 * 9 6 5 35 35 H 1.08999 * 109.46647 * 300.00163 * 10 9 6 36 36 H 1.08996 * 109.46868 * 59.99743 * 10 9 6 37 37 H 1.08998 * 109.47043 * 209.99493 * 14 13 11 38 38 H 1.09000 * 109.47309 * 330.00334 * 14 13 11 39 39 H 0.97006 * 119.99262 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47151 * 210.00155 * 23 13 11 41 41 H 1.09005 * 109.47219 * 330.00082 * 23 13 11 42 42 H 1.08998 * 109.47209 * 300.00082 * 24 23 13 43 43 H 1.08995 * 109.47253 * 60.00452 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0003 6 6 4.7969 -1.4371 -0.0014 7 1 4.5648 -2.4684 -0.2673 8 6 5.4289 -1.3995 1.3915 9 7 5.7381 -0.8787 -0.9813 10 6 6.6801 -1.9039 -1.4500 11 6 7.6280 -1.2951 -2.4510 12 8 7.5282 -0.1228 -2.7454 13 7 8.5858 -2.0537 -3.0198 14 6 9.5069 -1.4620 -3.9934 15 6 10.7160 -0.9197 -3.2757 16 1 10.7906 -1.0067 -2.2017 17 6 11.7270 -0.3125 -3.9901 18 7 11.6362 -0.2070 -5.2978 19 14 13.2254 0.3603 -3.1004 20 1 14.2631 -0.6979 -3.0088 21 1 13.7670 1.5212 -3.8514 22 1 12.8371 0.7924 -1.7337 23 6 8.7058 -3.4698 -2.6647 24 6 7.8407 -4.3075 -3.6085 25 6 7.9609 -5.7304 -3.2513 26 7 8.0564 -6.8283 -2.9744 27 7 2.3030 -1.0841 -0.0046 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3632 0.8898 0.5142 31 1 5.6610 -0.3683 1.6575 32 1 4.7305 -1.8139 2.1187 33 1 6.3455 -1.9893 1.3906 34 1 5.2466 -0.4581 -1.7557 35 1 7.2463 -2.2913 -0.6030 36 1 6.1275 -2.7172 -1.9203 37 1 9.8196 -2.2239 -4.7074 38 1 9.0050 -0.6520 -4.5228 39 1 12.3473 0.2206 -5.8003 40 1 9.7469 -3.7800 -2.7546 41 1 8.3704 -3.6167 -1.6380 42 1 6.7997 -3.9973 -3.5186 43 1 8.1762 -4.1607 -4.6351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348095177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:20 Heat of formation + Delta-G solvation = 40.406244 kcal Electronic energy + Delta-G solvation = -26472.083953 eV Core-core repulsion = 22555.212735 eV Total energy + Delta-G solvation = -3916.871218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -46.66472 -40.76766 -38.21681 -37.82489 -37.06854 -36.57637 -34.84349 -33.93413 -32.12189 -31.51575 -30.03517 -29.47955 -27.37524 -25.44818 -25.23703 -24.38502 -23.85210 -21.56713 -20.05456 -19.20182 -18.94172 -18.52827 -18.27464 -17.75929 -17.44206 -16.77752 -16.53077 -15.97225 -15.73358 -15.54118 -15.18819 -14.93242 -14.63634 -14.47477 -14.33237 -14.19124 -13.87459 -13.63273 -13.48045 -13.45443 -13.37619 -13.23599 -13.09710 -12.86917 -12.81601 -12.66321 -12.46459 -12.41362 -12.35201 -12.13895 -12.09563 -11.77987 -11.62279 -11.01714 -10.54785 -10.49234 -9.57780 -9.38277 -8.14488 -6.25922 0.03470 1.11230 1.41987 1.45045 1.54006 1.72699 1.75259 1.89318 1.95509 2.20257 2.44143 2.56157 2.98619 3.13462 3.18191 3.28378 3.77000 3.80735 4.08403 4.13154 4.17478 4.18525 4.38348 4.47051 4.51720 4.57177 4.63484 4.66808 4.79312 4.85729 4.90501 4.92343 5.07366 5.11883 5.15640 5.34468 5.39279 5.65329 5.74983 5.94531 6.07925 6.17780 6.66175 6.81475 6.88380 7.08813 7.39713 7.60455 8.92043 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.003095 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.246163 B = 9044.220241 C =10637.089588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.162 3.838 3 N -0.413 5.413 4 O 0.072 5.928 5 C 0.187 3.813 6 C 0.187 3.813 7 H 0.121 0.879 8 C -0.142 4.142 9 N -0.682 5.682 10 C 0.049 3.951 11 C 0.500 3.500 12 O -0.578 6.578 13 N -0.598 5.598 14 C 0.260 3.740 15 C -0.536 4.536 16 H 0.055 0.945 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.956 3.044 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.112 3.888 24 C -0.039 4.039 25 C 0.246 3.754 26 N -0.491 5.491 27 N -0.491 5.491 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.349 0.651 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.034 0.966 38 H 0.002 0.998 39 H 0.264 0.736 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.138 0.862 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.573 -7.397 11.322 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.124 5.124 4 O 0.018 5.982 5 C -0.034 4.034 6 C 0.076 3.924 7 H 0.138 0.862 8 C -0.201 4.201 9 N -0.316 5.316 10 C -0.082 4.082 11 C 0.288 3.712 12 O -0.457 6.457 13 N -0.329 5.329 14 C 0.139 3.861 15 C -0.574 4.574 16 H 0.073 0.927 17 C -0.189 4.189 18 N -0.568 5.568 19 Si 0.782 3.218 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.012 4.012 24 C -0.080 4.080 25 C -0.071 4.071 26 N -0.169 5.169 27 N -0.227 5.227 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.168 0.832 35 H 0.150 0.850 36 H 0.122 0.878 37 H 0.052 0.948 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.156 0.844 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.587 -7.600 11.890 23.337 hybrid contribution 0.752 0.775 -0.848 1.374 sum -17.835 -6.824 11.042 22.058 Atomic orbital electron populations 1.20365 0.80171 1.05909 1.05570 1.26711 1.02218 0.82993 0.99129 1.74698 0.89797 1.25132 1.22794 1.85343 1.22140 1.25351 1.65413 1.29278 0.97283 0.82073 0.94732 1.20323 0.80976 0.94532 0.96582 0.86180 1.21924 1.02204 1.03780 0.92159 1.60240 1.19764 1.32299 1.19347 1.22076 0.94283 0.93407 0.98473 1.21131 0.81767 0.86224 0.82031 1.90703 1.73007 1.18544 1.63459 1.48055 1.31588 1.10030 1.43235 1.18773 0.86754 0.93183 0.87412 1.21778 1.03899 1.37799 0.93968 0.92664 1.25717 1.01435 0.96259 0.95524 1.70027 1.34685 1.45066 1.07023 0.85585 0.79648 0.78118 0.78498 1.19261 1.21335 1.19776 1.21555 1.01465 0.78855 0.99363 1.19853 1.04954 0.80251 1.02918 1.29168 0.91447 0.94735 0.91756 1.81279 1.10644 1.14241 1.10705 1.71914 0.99680 1.29802 1.21258 0.87969 0.87473 0.88461 0.92401 0.90405 0.88574 0.83175 0.85011 0.87846 0.94828 0.97967 0.92713 0.89954 0.86850 0.84415 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.51 71.24 0.75 0.02 16 2 C 0.16 3.45 8.22 138.46 1.14 4.58 16 3 N -0.41 -10.74 12.16 -60.31 -0.73 -11.47 16 4 O 0.07 1.88 11.31 74.86 0.85 2.73 16 5 C 0.19 3.95 7.00 88.38 0.62 4.57 16 6 C 0.19 2.90 3.16 44.17 0.14 3.04 16 7 H 0.12 1.22 7.80 -2.38 -0.02 1.20 16 8 C -0.14 -1.89 9.40 71.98 0.68 -1.21 16 9 N -0.68 -14.52 5.93 -499.44 -2.96 -17.48 16 10 C 0.05 0.90 4.52 85.56 0.39 1.29 16 11 C 0.50 16.31 7.71 87.66 0.68 16.98 16 12 O -0.58 -26.13 15.78 -3.03 -0.05 -26.18 16 13 N -0.60 -19.54 2.46 -826.16 -2.03 -21.57 16 14 C 0.26 12.10 5.16 85.63 0.44 12.54 16 15 C -0.54 -28.25 9.39 25.60 0.24 -28.01 16 16 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 17 C 0.01 0.52 5.46 84.66 0.46 0.98 16 18 N -0.93 -53.49 13.29 21.45 0.28 -53.21 16 19 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 C 0.11 2.33 5.17 86.38 0.45 2.78 16 24 C -0.04 -0.58 6.03 28.79 0.17 -0.41 16 25 C 0.25 4.69 15.43 89.44 1.38 6.07 16 26 N -0.49 -12.49 18.54 20.01 0.37 -12.12 16 27 N -0.49 -10.55 11.55 -303.19 -3.50 -14.06 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 0.97 7.45 -2.39 -0.02 0.96 16 34 H 0.35 8.59 8.05 -89.70 -0.72 7.87 16 35 H 0.13 1.78 6.70 -2.39 -0.02 1.76 16 36 H 0.10 1.05 7.10 -2.39 -0.02 1.04 16 37 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 38 H 0.00 0.12 7.42 -2.39 -0.02 0.10 16 39 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 40 H 0.08 1.98 8.07 -2.39 -0.02 1.96 16 41 H 0.11 1.53 6.44 -2.38 -0.02 1.52 16 42 H 0.14 1.25 7.22 -2.39 -0.02 1.23 16 43 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.35 378.30 2.12 -77.24 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.33 Total: 7.54 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 7.53 Total: 23.22 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -8.57 Total: -129.90 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.80 Total: -23.45 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -79.35 2.12 -77.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348095177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.642 kcal (2) G-P(sol) polarization free energy of solvation -79.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds