Wall clock time and date at job start Fri Apr 10 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.07104 * 2 1 4 4 C 1.40427 * 107.86569 * 180.02562 * 3 2 1 5 5 N 1.39991 * 125.97771 * 180.02562 * 4 3 2 6 6 C 1.46495 * 119.99744 * 0.02562 * 5 4 3 7 7 H 1.08997 * 109.47330 * 324.99630 * 6 5 4 8 8 C 1.53002 * 109.47116 * 84.99744 * 6 5 4 9 9 C 1.50704 * 109.46817 * 204.99573 * 6 5 4 10 10 O 1.21231 * 120.00045 * 336.00370 * 9 6 5 11 11 N 1.34774 * 120.00023 * 155.99864 * 9 6 5 12 12 C 1.47047 * 125.41237 * 185.37926 * 11 9 6 13 13 C 1.54107 * 103.86656 * 180.02562 * 12 11 9 14 14 N 1.47058 * 103.85919 * 0.02562 * 13 12 11 15 15 C 1.33948 * 109.17846 * 359.73814 * 14 13 12 16 16 O 1.21540 * 123.04418 * 180.26960 * 15 14 13 17 17 N 1.31228 * 108.04564 * 359.72604 * 4 3 2 18 18 N 1.34964 * 126.06671 * 180.02562 * 2 1 3 19 19 C 1.46495 * 125.97212 * 359.95926 * 18 2 1 20 20 C 1.50707 * 109.47132 * 90.00342 * 19 18 2 21 21 H 1.07998 * 119.99806 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00211 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00078 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00076 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47325 * 89.99603 * 24 22 20 26 26 H 1.48501 * 109.46754 * 209.99948 * 24 22 20 27 27 H 1.48504 * 109.46919 * 329.99487 * 24 22 20 28 28 H 1.08997 * 109.47441 * 269.95573 * 1 2 3 29 29 H 1.09005 * 109.47356 * 29.95316 * 1 2 3 30 30 H 1.09000 * 109.47368 * 149.95158 * 1 2 3 31 31 H 1.08008 * 126.06641 * 0.07745 * 3 2 1 32 32 H 0.97002 * 119.99853 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.47403 * 302.87873 * 8 6 5 34 34 H 1.09004 * 109.47041 * 62.88099 * 8 6 5 35 35 H 1.09007 * 109.46764 * 182.87462 * 8 6 5 36 36 H 1.08999 * 110.55131 * 298.59703 * 12 11 9 37 37 H 1.09004 * 110.55122 * 61.26484 * 12 11 9 38 38 H 1.08993 * 110.55024 * 118.59388 * 13 12 11 39 39 H 1.09000 * 110.54953 * 241.40619 * 13 12 11 40 40 H 0.96996 * 125.40893 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.47151 * 210.00161 * 19 18 2 42 42 H 1.09003 * 109.47516 * 330.00559 * 19 18 2 43 43 H 0.96999 * 120.00460 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 -0.0006 5 7 4.7724 1.4737 -0.0003 6 6 4.6239 2.9311 0.0013 7 1 3.7494 3.2078 -0.5874 8 6 4.4477 3.4242 1.4389 9 6 5.8538 3.5619 -0.5990 10 8 6.9081 2.9635 -0.5897 11 7 5.7817 4.7915 -1.1463 12 6 6.8723 5.4713 -1.8609 13 6 6.2593 6.8253 -2.2683 14 7 4.8885 6.7647 -1.7394 15 6 4.7039 5.5866 -1.1293 16 8 3.6543 5.2690 -0.6051 17 7 3.6336 -0.6578 0.0050 18 7 2.3015 -1.0910 -0.0005 19 6 1.8498 -2.4845 -0.0003 20 6 1.6941 -2.9624 -1.4211 21 1 1.9097 -2.2946 -2.2420 22 6 1.2755 -4.2516 -1.6728 23 7 1.0125 -5.0647 -0.6732 24 14 1.0833 -4.8441 -3.4340 25 1 2.3640 -5.4335 -3.9006 26 1 0.0134 -5.8721 -3.4963 27 1 0.7195 -3.6977 -4.3050 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5146 31 1 1.9720 2.1212 0.0012 32 1 5.6573 1.0763 -0.0011 33 1 3.5879 2.9291 1.8901 34 1 5.3438 3.1926 2.0148 35 1 4.2862 4.5022 1.4360 36 1 7.7268 5.6217 -1.2011 37 1 7.1664 4.9010 -2.7420 38 1 6.8095 7.6475 -1.8109 39 1 6.2470 6.9287 -3.3533 40 1 4.2224 7.4648 -1.8230 41 1 2.5846 -3.1046 0.5132 42 1 0.8914 -2.5558 0.5140 43 1 0.7176 -5.9716 -0.8502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348947399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:31 Heat of formation + Delta-G solvation = 38.906026 kcal Electronic energy + Delta-G solvation = -27031.956398 eV Core-core repulsion = 23115.020126 eV Total energy + Delta-G solvation = -3916.936272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.31993 -40.24517 -39.32133 -37.20117 -35.63898 -34.33903 -33.40946 -31.86408 -30.78952 -29.81174 -29.27608 -26.47947 -26.06047 -25.54761 -23.59303 -23.22117 -22.47592 -19.97676 -19.52421 -18.90949 -18.28823 -17.53296 -17.07955 -16.59981 -16.32804 -15.67356 -15.31311 -15.09152 -14.81356 -14.51848 -14.38652 -14.14887 -14.04254 -14.00398 -13.24078 -12.99721 -12.90937 -12.64924 -12.41273 -12.37818 -12.18991 -11.94617 -11.68497 -11.40204 -11.29456 -10.97103 -10.75595 -10.68211 -10.37392 -10.20812 -10.12405 -9.96815 -9.65221 -9.48983 -9.14208 -8.56846 -7.67603 -6.96106 -6.16628 -4.24555 1.57255 1.78681 2.75124 2.96602 3.03922 3.26682 3.32536 3.35085 3.40793 3.70038 3.82784 4.12249 4.24916 4.29644 4.40003 4.49700 4.85312 4.96036 5.06560 5.15817 5.22662 5.28016 5.49109 5.74218 5.81552 5.89505 6.10936 6.15228 6.17656 6.22809 6.31456 6.38100 6.46753 6.52426 6.79283 6.97582 7.13279 7.28045 7.41919 7.74835 7.75900 7.86967 7.99708 8.21850 8.30307 8.82027 8.99971 9.41387 10.89663 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002743 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.932819 B =10204.116626 C =10447.149005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.107 3.893 3 C -0.334 4.334 4 C 0.316 3.684 5 N -0.718 5.718 6 C 0.162 3.838 7 H 0.122 0.878 8 C -0.153 4.153 9 C 0.549 3.451 10 O -0.491 6.491 11 N -0.582 5.582 12 C 0.079 3.921 13 C 0.091 3.909 14 N -0.729 5.729 15 C 0.698 3.302 16 O -0.540 6.540 17 N -0.344 5.344 18 N -0.326 5.326 19 C 0.260 3.740 20 C -0.533 4.533 21 H 0.064 0.936 22 C 0.064 3.936 23 N -0.893 5.893 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.404 0.596 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.436 0.564 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.991 27.296 -1.452 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.026 4.026 3 C -0.367 4.367 4 C 0.060 3.940 5 N -0.362 5.362 6 C 0.052 3.948 7 H 0.140 0.860 8 C -0.212 4.212 9 C 0.338 3.662 10 O -0.361 6.361 11 N -0.330 5.330 12 C -0.043 4.043 13 C -0.034 4.034 14 N -0.392 5.392 15 C 0.398 3.602 16 O -0.414 6.414 17 N -0.176 5.176 18 N -0.106 5.106 19 C 0.142 3.858 20 C -0.571 4.571 21 H 0.082 0.918 22 C -0.139 4.139 23 N -0.531 5.531 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.197 1.197 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.150 0.850 32 H 0.241 0.759 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.279 0.721 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.543 25.318 -1.039 26.740 hybrid contribution -0.253 0.612 -1.171 1.346 sum 8.290 25.929 -2.211 27.312 Atomic orbital electron populations 1.20382 0.88330 1.03721 1.02407 1.20838 0.94488 0.87332 0.99942 1.20510 0.90566 0.98388 1.27240 1.18915 0.86956 0.89516 0.98593 1.43138 1.05401 1.01252 1.86457 1.20630 0.94776 0.81138 0.98244 0.86047 1.22146 1.03140 1.01776 0.94160 1.21199 0.91495 0.78202 0.75265 1.90722 1.30977 1.60303 1.54089 1.46224 1.15112 1.17355 1.54340 1.22676 0.91096 0.92004 0.98540 1.22487 0.82572 0.97379 1.00943 1.45201 1.15791 1.18199 1.60016 1.15946 0.83449 0.81282 0.79484 1.91047 1.26341 1.75420 1.48593 1.77375 0.98871 1.08645 1.32677 1.48903 1.01328 1.07373 1.53006 1.19591 0.95769 0.71756 0.98656 1.21360 1.46295 0.97900 0.91584 0.91816 1.24927 0.94833 0.96117 0.97992 1.69923 1.45212 1.07045 1.30944 0.86375 0.77948 0.78526 0.83932 1.20389 1.20947 1.19705 0.91160 0.90838 0.89984 0.84989 0.75907 0.90203 0.92608 0.91125 0.88284 0.88280 0.89015 0.88997 0.72085 0.93162 0.93101 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 9.89 36.00 0.36 -1.20 16 2 C 0.11 2.29 6.92 -82.28 -0.57 1.72 16 3 C -0.33 -6.75 9.83 -39.82 -0.39 -7.14 16 4 C 0.32 6.76 8.14 -154.54 -1.26 5.50 16 5 N -0.72 -12.89 5.26 -54.70 -0.29 -13.17 16 6 C 0.16 2.40 2.09 -69.08 -0.14 2.25 16 7 H 0.12 1.92 5.30 -51.93 -0.28 1.64 16 8 C -0.15 -2.02 9.19 37.16 0.34 -1.68 16 9 C 0.55 7.34 7.00 -10.98 -0.08 7.27 16 10 O -0.49 -7.53 16.30 5.60 0.09 -7.43 16 11 N -0.58 -5.80 3.00 -120.14 -0.36 -6.16 16 12 C 0.08 0.43 7.21 -3.17 -0.02 0.41 16 13 C 0.09 0.22 8.06 -3.16 -0.03 0.20 16 14 N -0.73 -3.82 6.37 -64.71 -0.41 -4.24 16 15 C 0.70 6.84 8.45 -88.39 -0.75 6.09 16 16 O -0.54 -7.00 13.24 5.33 0.07 -6.93 16 17 N -0.34 -8.56 12.59 31.41 0.40 -8.16 16 18 N -0.33 -8.08 3.59 -58.33 -0.21 -8.29 16 19 C 0.26 6.96 5.81 -5.19 -0.03 6.93 16 20 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 21 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 22 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 24 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 31 H 0.13 2.35 7.45 -52.48 -0.39 1.96 16 32 H 0.40 7.34 7.90 -40.82 -0.32 7.02 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.86 6.67 -51.92 -0.35 0.51 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 39 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.44 1.42 8.96 -40.82 -0.37 1.05 16 41 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.05 1.34 7.65 -51.93 -0.40 0.94 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -35.66 363.00 -8.36 -44.03 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.85 Total: 6.75 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -2.99 Total: 6.54 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.14 Total: -65.08 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.16 Total: -14.36 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.66 -8.36 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348947399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.935 kcal (2) G-P(sol) polarization free energy of solvation -35.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds