Wall clock time and date at job start Fri Apr 10 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.07104 * 2 1 4 4 C 1.40427 * 107.86569 * 180.02562 * 3 2 1 5 5 N 1.39991 * 125.97771 * 180.02562 * 4 3 2 6 6 C 1.46495 * 119.99744 * 0.02562 * 5 4 3 7 7 H 1.08997 * 109.47330 * 324.99630 * 6 5 4 8 8 C 1.53002 * 109.47116 * 84.99744 * 6 5 4 9 9 C 1.50704 * 109.46817 * 204.99573 * 6 5 4 10 10 O 1.21231 * 120.00045 * 336.00370 * 9 6 5 11 11 N 1.34774 * 120.00023 * 155.99864 * 9 6 5 12 12 C 1.47047 * 125.41237 * 185.37926 * 11 9 6 13 13 C 1.54107 * 103.86656 * 180.02562 * 12 11 9 14 14 N 1.47058 * 103.85919 * 0.02562 * 13 12 11 15 15 C 1.33948 * 109.17846 * 359.73814 * 14 13 12 16 16 O 1.21540 * 123.04418 * 180.26960 * 15 14 13 17 17 N 1.31228 * 108.04564 * 359.72604 * 4 3 2 18 18 N 1.34964 * 126.06671 * 180.02562 * 2 1 3 19 19 C 1.46495 * 125.97212 * 359.95926 * 18 2 1 20 20 C 1.50707 * 109.47132 * 90.00342 * 19 18 2 21 21 H 1.07998 * 119.99806 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00211 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00078 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00076 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47325 * 89.99603 * 24 22 20 26 26 H 1.48501 * 109.46754 * 209.99948 * 24 22 20 27 27 H 1.48504 * 109.46919 * 329.99487 * 24 22 20 28 28 H 1.08997 * 109.47441 * 269.95573 * 1 2 3 29 29 H 1.09005 * 109.47356 * 29.95316 * 1 2 3 30 30 H 1.09000 * 109.47368 * 149.95158 * 1 2 3 31 31 H 1.08008 * 126.06641 * 0.07745 * 3 2 1 32 32 H 0.97002 * 119.99853 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.47403 * 302.87873 * 8 6 5 34 34 H 1.09004 * 109.47041 * 62.88099 * 8 6 5 35 35 H 1.09007 * 109.46764 * 182.87462 * 8 6 5 36 36 H 1.08999 * 110.55131 * 298.59703 * 12 11 9 37 37 H 1.09004 * 110.55122 * 61.26484 * 12 11 9 38 38 H 1.08993 * 110.55024 * 118.59388 * 13 12 11 39 39 H 1.09000 * 110.54953 * 241.40619 * 13 12 11 40 40 H 0.96996 * 125.40893 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.47151 * 210.00161 * 19 18 2 42 42 H 1.09003 * 109.47516 * 330.00559 * 19 18 2 43 43 H 0.96999 * 120.00460 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 -0.0006 5 7 4.7724 1.4737 -0.0003 6 6 4.6239 2.9311 0.0013 7 1 3.7494 3.2078 -0.5874 8 6 4.4477 3.4242 1.4389 9 6 5.8538 3.5619 -0.5990 10 8 6.9081 2.9635 -0.5897 11 7 5.7817 4.7915 -1.1463 12 6 6.8723 5.4713 -1.8609 13 6 6.2593 6.8253 -2.2683 14 7 4.8885 6.7647 -1.7394 15 6 4.7039 5.5866 -1.1293 16 8 3.6543 5.2690 -0.6051 17 7 3.6336 -0.6578 0.0050 18 7 2.3015 -1.0910 -0.0005 19 6 1.8498 -2.4845 -0.0003 20 6 1.6941 -2.9624 -1.4211 21 1 1.9097 -2.2946 -2.2420 22 6 1.2755 -4.2516 -1.6728 23 7 1.0125 -5.0647 -0.6732 24 14 1.0833 -4.8441 -3.4340 25 1 2.3640 -5.4335 -3.9006 26 1 0.0134 -5.8721 -3.4963 27 1 0.7195 -3.6977 -4.3050 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8895 -0.5146 31 1 1.9720 2.1212 0.0012 32 1 5.6573 1.0763 -0.0011 33 1 3.5879 2.9291 1.8901 34 1 5.3438 3.1926 2.0148 35 1 4.2862 4.5022 1.4360 36 1 7.7268 5.6217 -1.2011 37 1 7.1664 4.9010 -2.7420 38 1 6.8095 7.6475 -1.8109 39 1 6.2470 6.9287 -3.3533 40 1 4.2224 7.4648 -1.8230 41 1 2.5846 -3.1046 0.5132 42 1 0.8914 -2.5558 0.5140 43 1 0.7176 -5.9716 -0.8502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348947399.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:30 Heat of formation + Delta-G solvation = 12.358068 kcal Electronic energy + Delta-G solvation = -27033.107604 eV Core-core repulsion = 23115.020126 eV Total energy + Delta-G solvation = -3918.087478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.06767 -41.93048 -40.32066 -37.99018 -36.98254 -35.47980 -35.03474 -33.47307 -32.54554 -30.95107 -30.08470 -28.36551 -27.67211 -26.46718 -24.93762 -24.17432 -23.70067 -21.21991 -21.12822 -20.16953 -19.01915 -18.77861 -18.23408 -18.02241 -17.67227 -16.96655 -16.72457 -16.14912 -16.04338 -15.77423 -15.59707 -15.36708 -15.17558 -14.98299 -14.61790 -14.45290 -14.08502 -13.71059 -13.57708 -13.46848 -13.37703 -13.30983 -13.26322 -13.07465 -12.75361 -12.73731 -12.63504 -12.21240 -11.94500 -11.55789 -11.41821 -11.22031 -10.93882 -10.88666 -10.73149 -10.08001 -9.39353 -8.67529 -8.27003 -6.49176 0.59585 1.01501 1.24955 1.37152 1.38674 1.49791 1.69907 1.99218 2.17863 2.33574 2.54074 2.74534 2.97556 3.19407 3.43582 3.89884 3.91729 4.02411 4.08500 4.12372 4.28816 4.50157 4.53384 4.65874 4.72031 4.73985 4.81064 4.84648 4.85282 4.91120 4.99108 5.10970 5.14745 5.28108 5.37453 5.52858 5.57474 5.73503 5.84501 5.98063 6.24311 6.36674 6.50169 6.64743 6.70176 7.19300 7.21792 7.29283 8.74609 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.002743 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.932819 B =10204.116626 C =10447.149005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.101 3.899 3 C -0.329 4.329 4 C 0.321 3.679 5 N -0.713 5.713 6 C 0.159 3.841 7 H 0.116 0.884 8 C -0.143 4.143 9 C 0.552 3.448 10 O -0.518 6.518 11 N -0.582 5.582 12 C 0.067 3.933 13 C 0.098 3.902 14 N -0.710 5.710 15 C 0.688 3.312 16 O -0.578 6.578 17 N -0.398 5.398 18 N -0.353 5.353 19 C 0.278 3.722 20 C -0.552 4.552 21 H 0.048 0.952 22 C 0.021 3.979 23 N -0.920 5.920 24 Si 0.972 3.028 25 H -0.276 1.276 26 H -0.268 1.268 27 H -0.268 1.268 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.160 0.840 32 H 0.401 0.599 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.447 0.553 41 H 0.017 0.983 42 H 0.050 0.950 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.915 30.177 -2.929 31.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.031 4.031 3 C -0.361 4.361 4 C 0.064 3.936 5 N -0.357 5.357 6 C 0.050 3.950 7 H 0.133 0.867 8 C -0.202 4.202 9 C 0.341 3.659 10 O -0.390 6.390 11 N -0.329 5.329 12 C -0.054 4.054 13 C -0.026 4.026 14 N -0.374 5.374 15 C 0.388 3.612 16 O -0.455 6.455 17 N -0.230 5.230 18 N -0.134 5.134 19 C 0.159 3.841 20 C -0.590 4.590 21 H 0.066 0.934 22 C -0.180 4.180 23 N -0.558 5.558 24 Si 0.796 3.204 25 H -0.202 1.202 26 H -0.193 1.193 27 H -0.193 1.193 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.177 0.823 32 H 0.237 0.763 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.292 0.708 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.481 28.316 -2.541 29.668 hybrid contribution -0.152 -0.110 -0.704 0.728 sum 8.328 28.207 -3.245 29.589 Atomic orbital electron populations 1.20512 0.85496 1.04338 1.04077 1.21616 0.96392 0.86523 0.98529 1.20786 0.89739 0.99275 1.26281 1.19238 0.88530 0.89002 0.96790 1.43334 1.04327 1.02433 1.85613 1.20773 0.95664 0.79213 0.99359 0.86696 1.22033 1.02772 1.02367 0.92994 1.20752 0.90384 0.79324 0.75403 1.90711 1.31485 1.61413 1.55404 1.46097 1.16682 1.16381 1.53754 1.23099 0.90529 0.93198 0.98528 1.22783 0.80686 0.96356 1.02728 1.45199 1.17289 1.16608 1.58267 1.16204 0.82821 0.82329 0.79814 1.91010 1.27668 1.76411 1.50411 1.77269 0.99526 1.10656 1.35540 1.48671 1.01957 1.07214 1.55571 1.19121 0.94509 0.72955 0.97529 1.21465 1.47237 0.98410 0.91881 0.93404 1.25765 0.94002 0.95909 1.02338 1.70009 1.45245 1.07511 1.33030 0.85345 0.78211 0.78243 0.78609 1.20219 1.19278 1.19266 0.88888 0.87603 0.91836 0.82289 0.76266 0.91178 0.92376 0.89790 0.87168 0.87879 0.85797 0.86356 0.70750 0.96520 0.93213 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.89 9.89 71.23 0.70 -2.18 16 2 C 0.10 4.32 6.92 41.39 0.29 4.61 16 3 C -0.33 -13.15 9.83 22.11 0.22 -12.93 16 4 C 0.32 14.01 8.14 133.39 1.09 15.09 16 5 N -0.71 -26.07 5.26 -326.97 -1.72 -27.79 16 6 C 0.16 4.67 2.09 44.25 0.09 4.76 16 7 H 0.12 3.58 5.30 -2.39 -0.01 3.57 16 8 C -0.14 -3.70 9.19 71.98 0.66 -3.04 16 9 C 0.55 14.52 7.00 87.66 0.61 15.14 16 10 O -0.52 -15.85 16.30 -2.88 -0.05 -15.90 16 11 N -0.58 -10.73 3.00 -771.18 -2.32 -13.04 16 12 C 0.07 0.56 7.21 86.65 0.62 1.18 16 13 C 0.10 0.08 8.06 86.65 0.70 0.77 16 14 N -0.71 -5.25 6.37 -477.38 -3.04 -8.30 16 15 C 0.69 12.22 8.45 179.57 1.52 13.74 16 16 O -0.58 -14.33 13.24 -3.84 -0.05 -14.38 16 17 N -0.40 -20.58 12.59 -54.54 -0.69 -21.27 16 18 N -0.35 -18.16 3.59 -338.44 -1.22 -19.37 16 19 C 0.28 15.58 5.81 85.64 0.50 16.08 16 20 C -0.55 -32.43 9.39 25.60 0.24 -32.19 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 22 C 0.02 1.17 5.46 84.65 0.46 1.63 16 23 N -0.92 -53.87 13.29 21.44 0.28 -53.58 16 24 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 28 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 30 H 0.06 2.38 7.71 -2.39 -0.02 2.36 16 31 H 0.16 5.40 7.45 -2.91 -0.02 5.38 16 32 H 0.40 15.06 7.90 -92.71 -0.73 14.33 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.08 1.96 6.67 -2.38 -0.02 1.94 16 36 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.12 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.45 1.50 8.96 -92.71 -0.83 0.67 16 41 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 2.74 7.65 -2.39 -0.02 2.72 16 43 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -80.58 363.00 0.44 -80.14 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.50 Total: 24.17 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 7.70 Total: 22.67 kcal Atomic # 7 Polarization: -134.66 SS G_CDS: -8.70 Total: -143.35 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.10 Total: -30.28 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -80.58 0.44 -80.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348947399.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.501 kcal (2) G-P(sol) polarization free energy of solvation -80.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds