Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35248 * 126.06779 * 2 1 4 4 C 1.40433 * 107.86049 * 180.26072 * 3 2 1 5 5 N 1.39979 * 125.97832 * 179.70138 * 4 3 2 6 6 C 1.46500 * 120.00025 * 0.02562 * 5 4 3 7 7 H 1.09005 * 109.46815 * 34.99877 * 6 5 4 8 8 C 1.52997 * 109.47374 * 275.00088 * 6 5 4 9 9 C 1.50699 * 109.47335 * 154.99453 * 6 5 4 10 10 O 1.21240 * 120.00170 * 18.39446 * 9 6 5 11 11 N 1.34782 * 120.00219 * 198.38605 * 9 6 5 12 12 C 1.47046 * 125.40810 * 185.02131 * 11 9 6 13 13 C 1.54107 * 103.86244 * 180.02562 * 12 11 9 14 14 N 1.47059 * 103.86026 * 359.97438 * 13 12 11 15 15 C 1.33948 * 125.40680 * 4.72123 * 11 9 6 16 16 O 1.21537 * 123.04335 * 0.02562 * 15 11 9 17 17 N 1.31227 * 108.04689 * 359.74446 * 4 3 2 18 18 N 1.34962 * 126.06485 * 179.81339 * 2 1 3 19 19 C 1.46499 * 125.97486 * 0.02562 * 18 2 1 20 20 C 1.50704 * 109.46961 * 269.71617 * 19 18 2 21 21 H 1.08004 * 119.99772 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99700 * 179.72621 * 20 19 18 23 23 N 1.31508 * 120.00420 * 0.27110 * 22 20 19 24 24 Si 1.86801 * 119.99554 * 180.27306 * 22 20 19 25 25 H 1.48503 * 109.47102 * 89.99900 * 24 22 20 26 26 H 1.48507 * 109.47007 * 209.99713 * 24 22 20 27 27 H 1.48497 * 109.47564 * 330.00160 * 24 22 20 28 28 H 1.09009 * 109.47000 * 270.19126 * 1 2 3 29 29 H 1.08997 * 109.47474 * 30.18309 * 1 2 3 30 30 H 1.08998 * 109.47646 * 150.18825 * 1 2 3 31 31 H 1.07998 * 126.07087 * 359.96840 * 3 2 1 32 32 H 0.97005 * 120.00401 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46926 * 305.49537 * 8 6 5 34 34 H 1.09000 * 109.47554 * 65.49618 * 8 6 5 35 35 H 1.08993 * 109.47311 * 185.50205 * 8 6 5 36 36 H 1.08999 * 110.55395 * 298.59646 * 12 11 9 37 37 H 1.09005 * 110.55013 * 61.26707 * 12 11 9 38 38 H 1.08990 * 110.55437 * 118.59221 * 13 12 11 39 39 H 1.08999 * 110.54691 * 241.41105 * 13 12 11 40 40 H 0.96996 * 125.40845 * 180.02562 * 14 13 12 41 41 H 1.08994 * 109.46887 * 149.71589 * 19 18 2 42 42 H 1.08994 * 109.47141 * 29.71460 * 19 18 2 43 43 H 0.96999 * 120.00244 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6372 0.6545 -0.0061 5 7 4.7723 1.4736 -0.0140 6 6 4.6239 2.9310 -0.0159 7 1 3.7528 3.2083 0.5779 8 6 4.4391 3.4230 -1.4528 9 6 5.8573 3.5624 0.5766 10 8 6.8865 2.9263 0.6538 11 7 5.8164 4.8343 1.0206 12 6 6.9680 5.5995 1.5211 13 6 6.3683 6.9703 1.8900 14 7 4.9425 6.8321 1.5575 15 6 4.7212 5.6040 1.0706 16 8 3.6252 5.2211 0.7111 17 7 3.6336 -0.6578 -0.0040 18 7 2.3015 -1.0910 0.0036 19 6 1.8498 -2.4846 0.0076 20 6 1.7011 -2.9603 1.4298 21 1 1.9215 -2.2915 2.2487 22 6 1.2787 -4.2476 1.6854 23 7 1.0108 -5.0621 0.6883 24 14 1.0871 -4.8349 3.4483 25 1 -0.2940 -4.5539 3.9163 26 1 1.3444 -6.2960 3.5141 27 1 2.0584 -4.1217 4.3161 28 1 -0.3633 0.0034 1.0277 29 1 -0.3634 0.8883 -0.5166 30 1 -0.3634 -0.8916 -0.5109 31 1 1.9720 2.1212 -0.0005 32 1 5.6572 1.0762 -0.0181 33 1 5.2627 3.0623 -2.0691 34 1 3.4966 3.0443 -1.8482 35 1 4.4266 4.5128 -1.4650 36 1 7.3932 5.1188 2.4021 37 1 7.7236 5.7067 0.7428 38 1 6.4958 7.1700 2.9538 39 1 6.8248 7.7605 1.2940 40 1 4.2699 7.5220 1.6692 41 1 2.5821 -3.1053 -0.5085 42 1 0.8889 -2.5565 -0.5019 43 1 0.7133 -5.9676 0.8681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348947400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = 39.631832 kcal Electronic energy + Delta-G solvation = -27024.141095 eV Core-core repulsion = 23107.236296 eV Total energy + Delta-G solvation = -3916.904799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -42.32448 -40.23798 -39.31441 -37.20052 -35.63753 -34.34719 -33.40203 -31.87273 -30.78541 -29.82340 -29.26928 -26.47781 -26.05504 -25.55039 -23.60266 -23.21820 -22.47555 -19.98925 -19.51595 -18.90937 -18.28469 -17.55291 -17.04653 -16.58937 -16.33339 -15.69580 -15.35365 -15.07250 -14.78806 -14.53762 -14.37383 -14.14629 -14.00433 -13.98557 -13.30219 -13.00118 -12.91014 -12.65398 -12.42520 -12.39089 -12.17307 -11.95043 -11.75553 -11.41095 -11.28948 -10.98611 -10.73314 -10.65497 -10.33161 -10.20416 -10.16789 -9.95177 -9.65643 -9.48169 -9.14079 -8.55924 -7.66556 -6.95329 -6.15809 -4.23423 1.58005 1.78262 2.76623 2.97104 3.03365 3.26608 3.32781 3.35617 3.41669 3.69560 3.83611 4.12362 4.24897 4.29236 4.40495 4.49141 4.84608 4.95306 5.06044 5.16840 5.19795 5.29856 5.48597 5.66499 5.81179 5.87648 6.10753 6.16339 6.17107 6.19921 6.31559 6.37605 6.44824 6.51949 6.78231 6.96872 7.15081 7.28824 7.42453 7.75590 7.76783 7.87060 8.00589 8.22548 8.31330 8.82866 9.00795 9.42340 10.90563 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.002715 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.820440 B =10310.298061 C =10532.263034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.106 3.894 3 C -0.334 4.334 4 C 0.316 3.684 5 N -0.717 5.717 6 C 0.158 3.842 7 H 0.128 0.872 8 C -0.150 4.150 9 C 0.548 3.452 10 O -0.491 6.491 11 N -0.582 5.582 12 C 0.079 3.921 13 C 0.091 3.909 14 N -0.729 5.729 15 C 0.698 3.302 16 O -0.540 6.540 17 N -0.344 5.344 18 N -0.326 5.326 19 C 0.260 3.740 20 C -0.532 4.532 21 H 0.063 0.937 22 C 0.064 3.936 23 N -0.893 5.893 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.405 0.595 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.436 0.564 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.353 27.812 0.113 29.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 C -0.367 4.367 4 C 0.060 3.940 5 N -0.362 5.362 6 C 0.048 3.952 7 H 0.145 0.855 8 C -0.209 4.209 9 C 0.338 3.662 10 O -0.361 6.361 11 N -0.330 5.330 12 C -0.043 4.043 13 C -0.034 4.034 14 N -0.392 5.392 15 C 0.399 3.601 16 O -0.414 6.414 17 N -0.176 5.176 18 N -0.106 5.106 19 C 0.142 3.858 20 C -0.570 4.570 21 H 0.082 0.918 22 C -0.139 4.139 23 N -0.532 5.532 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.197 1.197 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.150 0.850 32 H 0.241 0.759 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.279 0.721 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.867 25.765 -0.137 27.249 hybrid contribution -0.272 0.632 1.159 1.348 sum 8.596 26.398 1.023 27.781 Atomic orbital electron populations 1.20338 0.88298 1.02686 1.03031 1.20840 0.94475 0.87370 0.99987 1.20503 0.90557 0.98373 1.27282 1.18915 0.86964 0.89522 0.98552 1.43124 1.05409 1.01238 1.86406 1.20711 0.95025 0.81240 0.98227 0.85467 1.22107 1.03683 1.00800 0.94328 1.21210 0.91318 0.78502 0.75212 1.90725 1.32991 1.59953 1.52406 1.46220 1.11360 1.13940 1.61518 1.22673 0.89515 0.90164 1.01955 1.22487 0.81029 0.97146 1.02720 1.45202 1.11194 1.14487 1.68334 1.15945 0.83991 0.81652 0.78557 1.91042 1.23158 1.74506 1.52684 1.77379 0.98826 1.08652 1.32704 1.48897 1.01345 1.07375 1.52987 1.19589 0.95751 0.71752 0.98670 1.21353 1.46124 0.97984 0.91564 0.91828 1.24923 0.94851 0.96102 0.98003 1.69921 1.45133 1.07109 1.31015 0.86375 0.78566 0.77865 0.83990 1.20382 1.20935 1.19724 0.90549 0.91005 0.90930 0.84973 0.75872 0.92319 0.90182 0.91903 0.88265 0.88315 0.88998 0.89022 0.72082 0.93177 0.93107 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 10.11 36.00 0.36 -1.11 16 2 C 0.11 2.28 6.92 -82.28 -0.57 1.71 16 3 C -0.33 -6.77 9.83 -39.82 -0.39 -7.16 16 4 C 0.32 6.79 8.14 -154.55 -1.26 5.53 16 5 N -0.72 -12.91 5.24 -54.70 -0.29 -13.20 16 6 C 0.16 2.33 2.10 -69.09 -0.15 2.19 16 7 H 0.13 2.03 5.12 -51.93 -0.27 1.76 16 8 C -0.15 -1.93 9.12 37.16 0.34 -1.59 16 9 C 0.55 7.33 7.04 -10.98 -0.08 7.25 16 10 O -0.49 -7.55 16.22 5.59 0.09 -7.46 16 11 N -0.58 -5.76 3.00 -120.14 -0.36 -6.12 16 12 C 0.08 0.42 7.21 -3.17 -0.02 0.40 16 13 C 0.09 0.21 8.06 -3.16 -0.03 0.19 16 14 N -0.73 -3.79 6.37 -64.71 -0.41 -4.20 16 15 C 0.70 6.83 8.21 -88.39 -0.73 6.11 16 16 O -0.54 -7.07 13.68 5.33 0.07 -7.00 16 17 N -0.34 -8.59 12.59 31.41 0.40 -8.20 16 18 N -0.33 -8.11 3.59 -58.33 -0.21 -8.32 16 19 C 0.26 6.99 5.99 -5.19 -0.03 6.96 16 20 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 21 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 22 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 24 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 28 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.28 7.06 -51.93 -0.37 0.91 16 31 H 0.13 2.36 7.45 -52.49 -0.39 1.96 16 32 H 0.40 7.37 7.86 -40.82 -0.32 7.05 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.72 7.02 -51.93 -0.36 0.36 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 39 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.44 1.41 8.96 -40.82 -0.37 1.04 16 41 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.05 1.34 7.03 -51.93 -0.37 0.97 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -35.97 362.34 -8.29 -44.26 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.79 Total: 6.56 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -2.97 Total: 6.61 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -0.14 Total: -65.19 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.16 Total: -14.46 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.97 -8.29 -44.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348947400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.890 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds