Wall clock time and date at job start Fri Apr 10 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47170 * 2 1 4 4 H 1.08994 * 109.47214 * 54.99791 * 3 2 1 5 5 C 1.53003 * 109.46689 * 294.99232 * 3 2 1 6 6 C 1.50703 * 109.47042 * 174.99655 * 3 2 1 7 7 N 1.31793 * 119.03582 * 59.72793 * 6 3 2 8 8 C 1.32276 * 120.88857 * 179.71802 * 7 6 3 9 9 C 1.39229 * 119.01235 * 0.54154 * 8 7 6 10 10 N 1.40007 * 120.86694 * 179.75225 * 9 8 7 11 11 C 1.34773 * 119.99660 * 32.37767 * 10 9 8 12 12 O 1.21590 * 120.00266 * 5.30222 * 11 10 9 13 13 N 1.34781 * 120.00046 * 185.29680 * 11 10 9 14 14 C 1.46499 * 120.00238 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47058 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00141 * 359.97438 * 15 14 13 17 17 N 1.34783 * 120.00213 * 179.97438 * 15 14 13 18 18 C 1.37089 * 120.00338 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99838 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00120 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00145 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46823 * 59.99843 * 22 20 18 24 24 H 1.48496 * 109.47265 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47261 * 300.00214 * 22 20 18 26 26 C 1.39222 * 118.26256 * 359.73438 * 9 8 7 27 27 N 1.31794 * 119.04211 * 239.99888 * 6 3 2 28 28 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47392 * 300.00839 * 1 2 3 30 30 H 1.09002 * 109.46583 * 60.00668 * 1 2 3 31 31 H 1.08995 * 109.47392 * 239.99161 * 2 1 3 32 32 H 1.09002 * 109.46583 * 119.99331 * 2 1 3 33 33 H 1.08996 * 109.47251 * 300.00361 * 5 3 2 34 34 H 1.08998 * 109.46863 * 60.00344 * 5 3 2 35 35 H 1.08999 * 109.46836 * 180.02562 * 5 3 2 36 36 H 1.07997 * 120.49462 * 180.25579 * 8 7 6 37 37 H 0.96993 * 119.99883 * 212.37982 * 10 9 8 38 38 H 0.96998 * 119.99511 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.46567 * 299.99767 * 14 13 11 40 40 H 1.08997 * 109.47459 * 59.99274 * 14 13 11 41 41 H 0.97004 * 119.99567 * 359.97438 * 17 15 14 42 42 H 0.97003 * 119.99468 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.48854 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1264 -1.3075 6 6 3.5419 1.4443 0.1239 7 7 4.2605 0.8355 -0.7980 8 6 5.5814 0.8191 -0.7284 9 6 6.2089 1.4474 0.3440 10 7 7.6042 1.4494 0.4589 11 6 8.3715 1.4650 -0.6490 12 8 7.8555 1.5746 -1.7445 13 7 9.7110 1.3592 -0.5426 14 6 10.5451 1.3766 -1.7468 15 6 11.9944 1.2434 -1.3559 16 8 12.3005 1.1442 -0.1864 17 7 12.9505 1.2346 -2.3058 18 6 14.2690 1.1139 -1.9502 19 1 14.5416 1.0264 -0.9088 20 6 15.2547 1.1053 -2.9295 21 7 14.9231 1.2124 -4.1966 22 14 17.0513 0.9416 -2.4449 23 1 17.2539 -0.3389 -1.7206 24 1 17.8968 0.9585 -3.6656 25 1 17.4314 2.0744 -1.5632 26 6 5.4126 2.0740 1.2988 27 7 4.0982 2.0499 1.1538 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8898 32 1 1.8932 -0.5138 0.8901 33 1 2.0700 1.5873 -2.1492 34 1 0.5491 2.1251 -1.3971 35 1 1.9991 3.1539 -1.3077 36 1 6.1642 0.3218 -1.4896 37 1 8.0186 1.4396 1.3358 38 1 10.1226 1.2715 0.3313 39 1 10.2659 0.5454 -2.3942 40 1 10.3965 2.3167 -2.2781 41 1 12.7057 1.3136 -3.2411 42 1 15.6112 1.2060 -4.8802 43 1 5.8616 2.5726 2.1450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351682063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:26 Heat of formation + Delta-G solvation = -28.454213 kcal Electronic energy + Delta-G solvation = -25561.913724 eV Core-core repulsion = 21642.056493 eV Total energy + Delta-G solvation = -3919.857231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58462 -40.09804 -38.37606 -36.79592 -35.13036 -34.63479 -33.92826 -33.76411 -31.47732 -30.98732 -29.30468 -27.56918 -25.51289 -24.99611 -24.53424 -23.26937 -21.14597 -20.64224 -19.76234 -19.02747 -18.25333 -17.63246 -17.35254 -16.93681 -15.81791 -15.64127 -15.15369 -15.13741 -15.05386 -14.74029 -14.45086 -14.18977 -14.16225 -13.89547 -13.59430 -13.53520 -12.90408 -12.44042 -12.31044 -12.19509 -12.07633 -11.87154 -11.68783 -11.36684 -11.21842 -11.15264 -11.01130 -10.89289 -10.86099 -10.55638 -10.40431 -10.32223 -9.69388 -9.39647 -9.09864 -8.72970 -8.49452 -8.17271 -6.57663 -4.00175 0.67053 0.91600 2.34087 2.96866 3.09250 3.18020 3.21384 3.59160 3.66004 3.68648 3.94908 4.00095 4.10694 4.35197 4.64890 4.69963 4.75738 4.76336 4.77508 5.10611 5.12850 5.22908 5.25908 5.34709 5.57929 5.62199 5.69424 5.74522 5.76383 5.80082 5.85127 5.87937 5.96121 6.07296 6.12549 6.35911 6.45441 6.64979 6.83346 7.39787 7.82109 7.84651 7.94486 8.35200 8.39502 8.97656 9.31336 9.78642 10.58837 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.042257 B = 0.001826 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.451631 B =15326.677507 C =15673.430438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.018 4.018 4 H 0.093 0.907 5 C -0.143 4.143 6 C 0.293 3.707 7 N -0.490 5.490 8 C 0.150 3.850 9 C 0.070 3.930 10 N -0.677 5.677 11 C 0.704 3.296 12 O -0.578 6.578 13 N -0.713 5.713 14 C 0.126 3.874 15 C 0.426 3.574 16 O -0.599 6.599 17 N -0.546 5.546 18 C -0.308 4.308 19 H 0.105 0.895 20 C 0.027 3.973 21 N -0.893 5.893 22 Si 0.935 3.065 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 C 0.119 3.881 27 N -0.498 5.498 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.181 0.819 37 H 0.413 0.587 38 H 0.410 0.590 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.396 0.604 42 H 0.276 0.724 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.099 -0.157 7.907 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.038 4.038 4 H 0.112 0.888 5 C -0.201 4.201 6 C 0.025 3.975 7 N -0.203 5.203 8 C -0.019 4.019 9 C -0.031 4.031 10 N -0.326 5.326 11 C 0.404 3.596 12 O -0.456 6.456 13 N -0.369 5.369 14 C -0.002 4.002 15 C 0.211 3.789 16 O -0.486 6.486 17 N -0.180 5.180 18 C -0.437 4.437 19 H 0.123 0.877 20 C -0.176 4.176 21 N -0.532 5.532 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.051 4.051 27 N -0.211 5.211 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.198 0.802 37 H 0.249 0.751 38 H 0.248 0.752 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -24.066 -0.140 7.373 25.171 hybrid contribution 2.419 0.040 0.535 2.478 sum -21.647 -0.100 7.908 23.047 Atomic orbital electron populations 1.21816 0.95272 1.01809 1.02024 1.21515 0.95924 0.94817 1.02836 1.19949 0.85618 0.98036 1.00225 0.88833 1.21843 1.01500 1.00297 0.96449 1.23077 0.97650 0.90821 0.85947 1.68231 1.06471 1.18186 1.27439 1.23510 0.89809 0.92522 0.96059 1.19333 0.84087 0.99784 0.99870 1.42419 1.03120 1.77550 1.09513 1.15829 0.81735 0.78184 0.83869 1.90947 1.72795 1.56823 1.25006 1.44767 1.03629 1.76683 1.11826 1.20884 0.89543 1.03485 0.86255 1.19678 0.86374 0.86038 0.86800 1.90498 1.82378 1.57424 1.18275 1.41773 1.06017 1.61769 1.08442 1.19682 0.80783 1.48004 0.95236 0.87673 1.25338 1.00915 0.96631 0.94724 1.69607 1.35264 1.48659 0.99715 0.85856 0.81013 0.79193 0.77817 1.19751 1.20806 1.19752 1.23028 0.88888 0.94424 0.98739 1.68185 1.11398 1.18297 1.23178 0.92585 0.92688 0.92210 0.90691 0.92245 0.91363 0.91514 0.92836 0.80233 0.75088 0.75162 0.89574 0.89637 0.76968 0.91443 0.81316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.11 -0.90 5.25 -26.73 -0.14 -1.04 16 3 C -0.02 -0.16 2.72 -91.77 -0.25 -0.41 16 4 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 5 C -0.14 -1.19 8.84 37.16 0.33 -0.86 16 6 C 0.29 3.44 6.34 -157.19 -1.00 2.44 16 7 N -0.49 -6.30 9.88 -10.58 -0.10 -6.40 16 8 C 0.15 1.97 9.94 -16.99 -0.17 1.80 16 9 C 0.07 0.81 6.34 -83.39 -0.53 0.28 16 10 N -0.68 -7.22 5.37 -14.03 -0.08 -7.29 16 11 C 0.70 10.06 8.34 -86.92 -0.72 9.33 16 12 O -0.58 -10.01 14.04 5.29 0.07 -9.94 16 13 N -0.71 -10.58 5.53 -66.42 -0.37 -10.95 16 14 C 0.13 2.15 6.15 -5.20 -0.03 2.12 16 15 C 0.43 9.23 7.85 -10.98 -0.09 9.15 16 16 O -0.60 -14.54 15.24 5.54 0.08 -14.46 16 17 N -0.55 -13.00 5.29 -10.96 -0.06 -13.06 16 18 C -0.31 -8.12 9.68 -14.94 -0.14 -8.26 16 19 H 0.11 2.88 7.16 -52.48 -0.38 2.51 16 20 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 21 N -0.89 -23.26 13.05 55.50 0.72 -22.53 16 22 Si 0.93 20.05 29.55 -169.99 -5.02 15.03 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 C 0.12 1.20 11.26 -17.00 -0.19 1.01 16 27 N -0.50 -5.78 10.29 -10.58 -0.11 -5.89 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.64 8.01 -51.93 -0.42 0.22 16 34 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.18 2.50 6.47 -52.49 -0.34 2.16 16 37 H 0.41 3.06 8.84 -40.82 -0.36 2.70 16 38 H 0.41 5.83 7.46 -40.82 -0.30 5.53 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.40 9.09 7.90 -40.82 -0.32 8.76 16 42 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -31.38 367.85 -7.72 -39.10 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -5.74 Total: 15.25 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: -2.67 Total: 15.60 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: 0.01 Total: -66.13 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.16 Total: -24.39 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.38 -7.72 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351682063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.642 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds