Wall clock time and date at job start Fri Apr 10 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47170 * 2 1 4 4 H 1.08994 * 109.47214 * 54.99791 * 3 2 1 5 5 C 1.53003 * 109.46689 * 294.99232 * 3 2 1 6 6 C 1.50703 * 109.47042 * 174.99655 * 3 2 1 7 7 N 1.31793 * 119.03582 * 59.72793 * 6 3 2 8 8 C 1.32276 * 120.88857 * 179.71802 * 7 6 3 9 9 C 1.39229 * 119.01235 * 0.54154 * 8 7 6 10 10 N 1.40007 * 120.86694 * 179.75225 * 9 8 7 11 11 C 1.34773 * 119.99660 * 32.37767 * 10 9 8 12 12 O 1.21590 * 120.00266 * 5.30222 * 11 10 9 13 13 N 1.34781 * 120.00046 * 185.29680 * 11 10 9 14 14 C 1.46499 * 120.00238 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47058 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00141 * 359.97438 * 15 14 13 17 17 N 1.34783 * 120.00213 * 179.97438 * 15 14 13 18 18 C 1.37089 * 120.00338 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99838 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00120 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00145 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46823 * 59.99843 * 22 20 18 24 24 H 1.48496 * 109.47265 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47261 * 300.00214 * 22 20 18 26 26 C 1.39222 * 118.26256 * 359.73438 * 9 8 7 27 27 N 1.31794 * 119.04211 * 239.99888 * 6 3 2 28 28 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47392 * 300.00839 * 1 2 3 30 30 H 1.09002 * 109.46583 * 60.00668 * 1 2 3 31 31 H 1.08995 * 109.47392 * 239.99161 * 2 1 3 32 32 H 1.09002 * 109.46583 * 119.99331 * 2 1 3 33 33 H 1.08996 * 109.47251 * 300.00361 * 5 3 2 34 34 H 1.08998 * 109.46863 * 60.00344 * 5 3 2 35 35 H 1.08999 * 109.46836 * 180.02562 * 5 3 2 36 36 H 1.07997 * 120.49462 * 180.25579 * 8 7 6 37 37 H 0.96993 * 119.99883 * 212.37982 * 10 9 8 38 38 H 0.96998 * 119.99511 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.46567 * 299.99767 * 14 13 11 40 40 H 1.08997 * 109.47459 * 59.99274 * 14 13 11 41 41 H 0.97004 * 119.99567 * 359.97438 * 17 15 14 42 42 H 0.97003 * 119.99468 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.48854 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1264 -1.3075 6 6 3.5419 1.4443 0.1239 7 7 4.2605 0.8355 -0.7980 8 6 5.5814 0.8191 -0.7284 9 6 6.2089 1.4474 0.3440 10 7 7.6042 1.4494 0.4589 11 6 8.3715 1.4650 -0.6490 12 8 7.8555 1.5746 -1.7445 13 7 9.7110 1.3592 -0.5426 14 6 10.5451 1.3766 -1.7468 15 6 11.9944 1.2434 -1.3559 16 8 12.3005 1.1442 -0.1864 17 7 12.9505 1.2346 -2.3058 18 6 14.2690 1.1139 -1.9502 19 1 14.5416 1.0264 -0.9088 20 6 15.2547 1.1053 -2.9295 21 7 14.9231 1.2124 -4.1966 22 14 17.0513 0.9416 -2.4449 23 1 17.2539 -0.3389 -1.7206 24 1 17.8968 0.9585 -3.6656 25 1 17.4314 2.0744 -1.5632 26 6 5.4126 2.0740 1.2988 27 7 4.0982 2.0499 1.1538 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8898 32 1 1.8932 -0.5138 0.8901 33 1 2.0700 1.5873 -2.1492 34 1 0.5491 2.1251 -1.3971 35 1 1.9991 3.1539 -1.3077 36 1 6.1642 0.3218 -1.4896 37 1 8.0186 1.4396 1.3358 38 1 10.1226 1.2715 0.3313 39 1 10.2659 0.5454 -2.3942 40 1 10.3965 2.3167 -2.2781 41 1 12.7057 1.3136 -3.2411 42 1 15.6112 1.2060 -4.8802 43 1 5.8616 2.5726 2.1450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351682063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:22 Heat of formation + Delta-G solvation = -51.492775 kcal Electronic energy + Delta-G solvation = -25562.912751 eV Core-core repulsion = 21642.056493 eV Total energy + Delta-G solvation = -3920.856258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -42.52323 -41.25261 -40.08655 -37.60349 -36.31519 -36.02194 -35.44264 -34.75130 -33.37727 -31.82185 -30.14821 -28.93548 -26.65086 -25.95852 -25.89150 -24.11358 -22.26713 -21.43645 -21.32271 -20.26631 -19.97610 -18.81684 -18.35019 -17.76432 -17.40426 -16.94328 -16.58214 -16.31864 -16.12049 -15.78599 -15.70493 -15.61087 -15.27511 -15.11107 -14.70881 -14.30132 -13.98900 -13.75666 -13.53674 -13.50910 -13.04598 -12.90399 -12.82899 -12.52350 -12.46589 -12.27171 -12.14200 -12.01313 -11.90312 -11.63037 -11.55848 -11.54430 -11.47215 -10.56590 -10.39095 -10.27493 -10.09226 -9.43516 -8.50811 -6.01016 -0.23816 0.00783 1.24497 1.38359 1.44137 1.54594 1.82743 1.92905 2.27753 2.69340 2.83365 2.94408 3.13923 3.16694 3.16997 3.47723 3.80868 3.97860 4.02458 4.10147 4.19169 4.40980 4.43883 4.48279 4.57565 4.64645 4.73736 4.75209 4.91145 5.03484 5.12197 5.15326 5.18961 5.20764 5.38463 5.40524 5.49738 5.51974 5.67627 5.91159 5.93314 6.47652 6.75805 7.03616 7.04375 7.23793 7.44660 7.94147 8.65567 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.042257 B = 0.001826 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.451631 B =15326.677507 C =15673.430438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.019 4.019 4 H 0.103 0.897 5 C -0.138 4.138 6 C 0.286 3.714 7 N -0.506 5.506 8 C 0.133 3.867 9 C 0.062 3.938 10 N -0.657 5.657 11 C 0.708 3.292 12 O -0.609 6.609 13 N -0.711 5.711 14 C 0.140 3.860 15 C 0.433 3.567 16 O -0.623 6.623 17 N -0.558 5.558 18 C -0.338 4.338 19 H 0.088 0.912 20 C -0.010 4.010 21 N -0.915 5.915 22 Si 0.996 3.004 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.270 1.270 26 C 0.132 3.868 27 N -0.508 5.508 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.166 0.834 37 H 0.430 0.570 38 H 0.415 0.585 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.399 0.601 42 H 0.280 0.720 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.011 0.275 9.061 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.039 4.039 4 H 0.121 0.879 5 C -0.196 4.196 6 C 0.018 3.982 7 N -0.220 5.220 8 C -0.036 4.036 9 C -0.039 4.039 10 N -0.307 5.307 11 C 0.408 3.592 12 O -0.488 6.488 13 N -0.367 5.367 14 C 0.012 3.988 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.106 0.894 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.195 1.195 26 C -0.037 4.037 27 N -0.220 5.220 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.183 0.817 37 H 0.270 0.730 38 H 0.254 0.746 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -25.005 0.287 8.557 26.430 hybrid contribution 2.588 -0.089 0.236 2.600 sum -22.417 0.198 8.793 24.081 Atomic orbital electron populations 1.21793 0.93495 1.02440 1.02773 1.21460 0.97388 0.93909 1.01845 1.20091 0.84091 0.98823 1.00880 0.87853 1.21811 1.02875 0.99413 0.95494 1.23628 0.98815 0.90141 0.85627 1.68228 1.06502 1.18986 1.28255 1.23410 0.90189 0.93365 0.96637 1.19345 0.84200 1.00315 0.99994 1.42111 1.02647 1.76576 1.09411 1.15828 0.81418 0.77774 0.84210 1.90940 1.73210 1.58134 1.26552 1.44615 1.03760 1.77100 1.11269 1.20666 0.86460 1.04488 0.87191 1.20387 0.87885 0.83706 0.86035 1.90478 1.83412 1.57878 1.19391 1.41824 1.05814 1.62822 1.08922 1.19703 0.82384 1.49874 0.94781 0.89449 1.26110 1.04516 0.95848 0.94585 1.69675 1.36502 1.48975 1.00352 0.84936 0.76298 0.79056 0.77759 1.19523 1.19785 1.19500 1.23609 0.88306 0.92965 0.98842 1.68300 1.12026 1.18577 1.23138 0.92070 0.91838 0.91514 0.92004 0.92923 0.92801 0.89211 0.93555 0.81727 0.72966 0.74629 0.88442 0.88600 0.76667 0.91096 0.77593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.67 71.98 0.70 -0.83 16 2 C -0.11 -1.63 5.25 30.59 0.16 -1.47 16 3 C -0.02 -0.32 2.72 -11.54 -0.03 -0.35 16 4 H 0.10 1.56 8.09 -2.39 -0.02 1.54 16 5 C -0.14 -2.16 8.84 71.98 0.64 -1.53 16 6 C 0.29 6.50 6.34 138.75 0.88 7.37 16 7 N -0.51 -13.08 9.88 -187.38 -1.85 -14.93 16 8 C 0.13 3.49 9.94 84.86 0.84 4.33 16 9 C 0.06 1.35 6.34 38.31 0.24 1.60 16 10 N -0.66 -12.94 5.37 -316.58 -1.70 -14.64 16 11 C 0.71 19.48 8.34 179.05 1.49 20.98 16 12 O -0.61 -20.85 14.04 -4.00 -0.06 -20.91 16 13 N -0.71 -20.30 5.53 -482.30 -2.67 -22.97 16 14 C 0.14 4.66 6.15 85.63 0.53 5.19 16 15 C 0.43 18.75 7.85 87.65 0.69 19.44 16 16 O -0.62 -30.27 15.24 -3.08 -0.05 -30.32 16 17 N -0.56 -26.89 5.29 -306.98 -1.62 -28.51 16 18 C -0.34 -18.07 9.68 84.04 0.81 -17.25 16 19 H 0.09 4.89 7.16 -2.91 -0.02 4.87 16 20 C -0.01 -0.49 5.50 84.92 0.47 -0.03 16 21 N -0.92 -47.63 13.05 21.66 0.28 -47.34 16 22 Si 1.00 40.81 29.55 68.60 2.03 42.84 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 26 C 0.13 2.39 11.26 84.87 0.96 3.35 16 27 N -0.51 -10.95 10.29 -187.40 -1.93 -12.88 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.60 6.56 -2.39 -0.02 0.58 16 31 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.00 8.01 -2.39 -0.02 0.98 16 34 H 0.09 0.96 6.56 -2.39 -0.02 0.95 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.17 4.76 6.47 -2.91 -0.02 4.74 16 37 H 0.43 5.36 8.84 -92.71 -0.82 4.54 16 38 H 0.42 11.27 7.46 -92.71 -0.69 10.58 16 39 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.40 18.50 7.90 -92.71 -0.73 17.77 16 42 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 43 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -67.50 367.85 -0.36 -67.86 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -1.16 Total: 41.01 kcal Atomic # 6 Polarization: 32.43 SS G_CDS: 8.37 Total: 40.80 kcal Atomic # 7 Polarization: -131.79 SS G_CDS: -9.49 Total: -141.28 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.10 Total: -51.23 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -67.50 -0.36 -67.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351682063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.367 kcal (2) G-P(sol) polarization free energy of solvation -67.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds