Wall clock time and date at job start Fri Apr 10 2020 18:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86799 * 119.99887 * 2 1 4 4 H 1.48504 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47408 * 300.00020 * 3 2 1 6 6 H 1.48501 * 109.47324 * 60.00235 * 3 2 1 7 7 C 1.38950 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.37094 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99977 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00236 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00014 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47332 * 180.02562 * 12 10 9 14 14 C 1.34772 * 120.00184 * 179.97438 * 13 12 10 15 15 O 1.21584 * 120.00062 * 4.97811 * 14 13 12 16 16 N 1.34779 * 120.00164 * 184.97636 * 14 13 12 17 17 C 1.46924 * 120.63017 * 174.76714 * 16 14 13 18 18 C 1.53195 * 108.77121 * 126.37514 * 17 16 14 19 19 C 1.53032 * 109.31500 * 54.63331 * 18 17 16 20 20 C 1.53035 * 109.54121 * 298.63767 * 19 18 17 21 21 H 1.09001 * 109.49816 * 301.38007 * 20 19 18 22 22 N 1.46506 * 109.50111 * 181.31645 * 20 19 18 23 23 C 1.34940 * 126.03592 * 275.02450 * 22 20 19 24 24 C 1.35318 * 107.74892 * 179.74755 * 23 22 20 25 25 C 1.39869 * 107.91285 * 0.39672 * 24 23 22 26 26 N 1.30834 * 108.20664 * 359.59591 * 25 24 23 27 27 C 1.46926 * 120.62784 * 354.75155 * 16 14 13 28 28 H 0.97002 * 120.00326 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00117 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.47375 * 59.99191 * 12 10 9 31 31 H 1.09003 * 109.46944 * 299.99706 * 12 10 9 32 32 H 0.97000 * 119.99475 * 359.97438 * 13 12 10 33 33 H 1.08999 * 109.58618 * 6.58790 * 17 16 14 34 34 H 1.09003 * 109.70704 * 246.22768 * 17 16 14 35 35 H 1.09004 * 109.49721 * 294.67962 * 18 17 16 36 36 H 1.08998 * 109.49654 * 174.59124 * 18 17 16 37 37 H 1.09003 * 109.46083 * 178.61221 * 19 18 17 38 38 H 1.09000 * 109.46087 * 58.65668 * 19 18 17 39 39 H 1.08005 * 126.12948 * 359.97438 * 23 22 20 40 40 H 1.07998 * 126.03956 * 180.27420 * 24 23 22 41 41 H 1.08008 * 125.89691 * 179.86565 * 25 24 23 42 42 H 1.09000 * 109.58575 * 113.84369 * 27 16 14 43 43 H 1.08997 * 109.58800 * 353.41586 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1957 -5.9764 -0.0004 14 6 1.7465 -7.2471 -0.0002 15 8 0.5549 -7.4706 -0.0920 16 7 2.6181 -8.2700 0.1017 17 6 2.1381 -9.6537 0.2184 18 6 2.8048 -10.5003 -0.8705 19 6 4.3244 -10.3514 -0.7679 20 6 4.7114 -8.8875 -0.9896 21 1 4.3605 -8.5627 -1.9691 22 7 6.1686 -8.7513 -0.9224 23 6 6.9001 -8.5919 0.2003 24 6 8.2011 -8.5114 -0.1630 25 6 8.2660 -8.6165 -1.5562 26 7 7.0486 -8.7637 -2.0122 27 6 4.0664 -8.0226 0.0979 28 1 -0.4851 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.6173 -4.9204 -0.8912 31 1 0.6168 -4.9208 0.8887 32 1 3.1494 -5.7991 0.0000 33 1 1.0561 -9.6773 0.0884 34 1 2.3970 -10.0511 1.1999 35 1 2.4713 -10.1603 -1.8509 36 1 2.5318 -11.5469 -0.7357 37 1 4.8021 -10.9722 -1.5260 38 1 4.6544 -10.6684 0.2214 39 1 6.5163 -8.5415 1.2086 40 1 9.0407 -8.3860 0.5047 41 1 9.1662 -8.5861 -2.1523 42 1 4.4846 -8.2854 1.0696 43 1 4.2567 -6.9700 -0.1115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358272257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:54 Heat of formation + Delta-G solvation = 0.628569 kcal Electronic energy + Delta-G solvation = -26821.689839 eV Core-core repulsion = 22903.093732 eV Total energy + Delta-G solvation = -3918.596107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -42.30485 -41.50006 -40.19790 -38.69347 -36.31315 -35.48540 -34.70126 -33.47848 -33.22879 -30.99811 -30.01414 -29.30230 -26.86834 -25.92422 -24.74375 -22.68815 -22.06565 -21.44683 -21.38802 -20.53782 -20.10992 -19.40885 -18.22659 -17.59874 -17.30199 -16.93740 -16.58953 -16.11776 -16.02629 -15.93033 -15.77912 -15.42825 -15.31176 -15.04766 -14.56653 -14.40010 -14.21574 -14.01392 -13.63523 -13.58429 -13.56380 -13.48361 -12.92868 -12.60311 -12.46325 -12.32017 -12.12192 -12.09315 -11.87784 -11.61626 -11.59767 -11.39967 -10.58865 -10.43531 -10.35836 -10.11462 -9.73369 -9.46482 -8.52722 -6.02963 0.98076 1.20754 1.33842 1.42181 1.55606 1.64540 1.86777 1.98313 2.00044 2.26638 2.73072 3.09429 3.14506 3.25353 3.47988 3.79090 3.85551 3.93125 4.09569 4.14740 4.17303 4.23657 4.37050 4.42530 4.42866 4.51508 4.66648 4.70436 4.80685 4.88780 4.93918 5.01393 5.17895 5.22713 5.24104 5.36846 5.38064 5.71961 5.76754 5.90392 6.12781 6.45872 6.74737 6.78607 7.01909 7.34510 7.43610 7.92299 8.64381 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.002939 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.838763 B = 9524.817705 C =11290.317658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.432 3.568 11 O -0.626 6.626 12 C 0.140 3.860 13 N -0.727 5.727 14 C 0.709 3.291 15 O -0.620 6.620 16 N -0.619 5.619 17 C 0.121 3.879 18 C -0.122 4.122 19 C -0.116 4.116 20 C 0.152 3.848 21 H 0.083 0.917 22 N -0.373 5.373 23 C 0.050 3.950 24 C -0.283 4.283 25 C 0.036 3.964 26 N -0.342 5.342 27 C 0.108 3.892 28 H 0.280 0.720 29 H 0.399 0.601 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.406 0.594 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.203 0.797 40 H 0.168 0.832 41 H 0.204 0.796 42 H 0.109 0.891 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.794 -21.744 2.460 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.193 5.193 10 C 0.219 3.781 11 O -0.514 6.514 12 C 0.011 3.989 13 N -0.387 5.387 14 C 0.410 3.590 15 O -0.501 6.501 16 N -0.356 5.356 17 C -0.001 4.001 18 C -0.161 4.161 19 C -0.155 4.155 20 C 0.048 3.952 21 H 0.102 0.898 22 N -0.156 5.156 23 C -0.095 4.095 24 C -0.312 4.312 25 C -0.149 4.149 26 N -0.163 5.163 27 C -0.017 4.017 28 H 0.090 0.910 29 H 0.234 0.766 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.219 0.781 40 H 0.186 0.814 41 H 0.220 0.780 42 H 0.127 0.873 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.689 -21.878 1.363 23.580 hybrid contribution 0.710 1.381 0.387 1.600 sum 9.399 -20.498 1.750 22.618 Atomic orbital electron populations 1.69680 1.06988 1.29616 1.49222 1.26119 0.96531 1.02646 0.95733 0.84823 0.78116 0.76750 0.78361 1.19491 1.19672 1.19478 1.19762 0.92932 0.83534 1.50408 0.89656 1.41825 1.09607 1.04552 1.63299 1.20407 0.88096 0.85932 0.83616 1.90468 1.15251 1.87556 1.58144 1.20627 0.90966 0.83028 1.04245 1.44958 1.11031 1.03558 1.79135 1.15803 0.84832 0.80688 0.77635 1.90885 1.15428 1.84207 1.59539 1.47135 1.04514 1.06632 1.77350 1.21796 1.00473 0.77569 1.00216 1.21893 0.93301 1.01985 0.98905 1.21889 0.96850 0.92616 1.04126 1.21564 0.74377 0.98460 1.00758 0.89829 1.48783 1.06223 1.56164 1.04396 1.23125 0.92340 1.00252 0.93809 1.21885 0.97429 1.16343 0.95540 1.24414 0.95926 0.98748 0.95845 1.77344 1.01205 1.26190 1.11544 1.21921 0.80340 0.99579 0.99868 0.91024 0.76641 0.89081 0.88572 0.75350 0.89663 0.88592 0.92370 0.86886 0.91035 0.89026 0.78060 0.81420 0.77977 0.87296 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 1.00 41.75 29.55 68.60 2.03 43.78 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16 8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.56 -28.01 5.29 -307.00 -1.62 -29.63 16 10 C 0.43 20.03 7.85 87.66 0.69 20.72 16 11 O -0.63 -32.51 15.24 -3.05 -0.05 -32.56 16 12 C 0.14 5.15 6.16 85.63 0.53 5.68 16 13 N -0.73 -24.33 5.44 -482.30 -2.62 -26.96 16 14 C 0.71 22.14 8.29 179.06 1.49 23.62 16 15 O -0.62 -23.06 15.77 -3.98 -0.06 -23.12 16 16 N -0.62 -13.69 2.97 -836.92 -2.49 -16.17 16 17 C 0.12 1.95 6.44 86.36 0.56 2.51 16 18 C -0.12 -1.50 6.08 30.67 0.19 -1.32 16 19 C -0.12 -1.51 5.49 30.62 0.17 -1.34 16 20 C 0.15 2.80 3.35 45.07 0.15 2.95 16 21 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 22 N -0.37 -7.74 3.53 -327.12 -1.15 -8.90 16 23 C 0.05 0.83 10.58 83.54 0.88 1.72 16 24 C -0.28 -4.79 10.80 21.99 0.24 -4.55 16 25 C 0.04 0.72 12.02 85.24 1.02 1.74 16 26 N -0.34 -8.59 12.58 -57.02 -0.72 -9.31 16 27 C 0.11 1.99 5.42 86.36 0.47 2.46 16 28 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.40 19.24 7.90 -92.70 -0.73 18.51 16 30 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.41 13.61 4.93 -92.71 -0.46 13.15 16 33 H 0.08 1.71 6.99 -2.39 -0.02 1.70 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.20 1.87 7.13 -2.91 -0.02 1.85 16 40 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.11 1.39 6.90 -2.39 -0.02 1.37 16 43 H 0.07 1.72 5.65 -2.39 -0.01 1.71 16 Total: -1.00 -72.77 358.64 1.13 -71.64 By element: Atomic # 1 Polarization: 43.18 SS G_CDS: -0.13 Total: 43.05 kcal Atomic # 6 Polarization: 28.73 SS G_CDS: 7.66 Total: 36.39 kcal Atomic # 7 Polarization: -130.86 SS G_CDS: -8.32 Total: -139.18 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -0.11 Total: -55.68 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -72.77 1.13 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358272257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.273 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds