Wall clock time and date at job start Fri Apr 10 2020 18:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99563 * 2 1 4 4 H 1.48497 * 109.47208 * 239.99987 * 3 2 1 5 5 H 1.48502 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46777 * 120.00072 * 3 2 1 7 7 C 1.38947 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99805 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99638 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00167 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99662 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.47290 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00322 * 179.97438 * 13 12 10 15 15 O 1.21586 * 119.99664 * 5.08013 * 14 13 12 16 16 N 1.34777 * 120.00032 * 185.07307 * 14 13 12 17 17 C 1.46923 * 120.63035 * 174.96220 * 16 14 13 18 18 C 1.53189 * 108.78044 * 233.59002 * 17 16 14 19 19 C 1.53043 * 109.31140 * 305.36944 * 18 17 16 20 20 C 1.50696 * 109.45793 * 181.38092 * 19 18 17 21 21 C 1.39861 * 126.04430 * 299.96845 * 20 19 18 22 22 N 1.30839 * 108.20282 * 179.74064 * 21 20 19 23 23 N 1.40080 * 108.20666 * 0.40934 * 22 21 20 24 24 H 0.96999 * 126.03856 * 179.85260 * 23 22 21 25 25 C 1.34948 * 107.92401 * 359.58589 * 23 22 21 26 26 C 1.53043 * 109.52693 * 61.36655 * 19 18 17 27 27 C 1.46924 * 120.63213 * 354.94500 * 16 14 13 28 28 H 0.96996 * 120.00413 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00107 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47007 * 60.00734 * 12 10 9 31 31 H 1.08997 * 109.47480 * 300.00021 * 12 10 9 32 32 H 0.97006 * 119.99408 * 0.02562 * 13 12 10 33 33 H 1.08995 * 109.58552 * 113.79785 * 17 16 14 34 34 H 1.09007 * 109.70280 * 353.45048 * 17 16 14 35 35 H 1.08994 * 109.50241 * 185.41159 * 18 17 16 36 36 H 1.09006 * 109.52161 * 65.32735 * 18 17 16 37 37 H 1.08995 * 109.45934 * 301.35667 * 19 18 17 38 38 H 1.08003 * 125.89628 * 359.97438 * 21 20 19 39 39 H 1.08001 * 126.12665 * 180.26286 * 25 23 22 40 40 H 1.08996 * 109.49591 * 58.58508 * 26 19 18 41 41 H 1.09000 * 109.49716 * 178.67549 * 26 19 18 42 42 H 1.08991 * 109.58979 * 246.20208 * 27 16 14 43 43 H 1.09007 * 109.58721 * 6.48295 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0010 13 7 2.1961 -5.9764 -0.0030 14 6 1.7469 -7.2471 -0.0023 15 8 0.5553 -7.4707 -0.0933 16 7 2.6187 -8.2700 0.0991 17 6 2.1389 -9.6540 0.2120 18 6 2.7744 -10.2970 1.4487 19 6 4.2966 -10.1644 1.3623 20 6 4.9269 -10.8257 2.5608 21 6 4.7128 -10.4799 3.8990 22 7 5.4273 -11.2807 4.6474 23 7 6.1270 -12.1566 3.8074 24 1 6.7356 -12.8562 4.0921 25 6 5.8001 -11.8591 2.5324 26 6 4.6805 -8.6831 1.3367 27 6 4.0669 -8.0222 0.0984 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6164 -4.9205 -0.8903 31 1 0.6184 -4.9209 0.8896 32 1 3.1498 -5.7991 -0.0040 33 1 2.4249 -10.2137 -0.6785 34 1 1.0536 -9.6596 0.3141 35 1 2.5028 -11.3517 1.4907 36 1 2.4157 -9.7929 2.3462 37 1 4.6521 -10.6474 0.4522 38 1 4.0662 -9.6908 4.2535 39 1 6.1691 -12.3568 1.6477 40 1 4.3037 -8.1941 2.2349 41 1 5.7658 -8.5892 1.2989 42 1 4.5102 -8.4486 -0.8013 43 1 4.2539 -6.9486 0.1243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358312659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:05 Heat of formation + Delta-G solvation = 9.700334 kcal Electronic energy + Delta-G solvation = -26374.314763 eV Core-core repulsion = 22456.112037 eV Total energy + Delta-G solvation = -3918.202726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 6.11 seconds Orbital eigenvalues (eV) -41.57613 -40.22315 -38.38341 -37.43285 -34.47180 -33.87868 -33.52700 -31.57702 -31.37619 -31.11391 -29.71096 -27.50148 -25.16037 -24.26743 -23.25837 -22.41478 -21.42183 -20.21947 -19.62843 -19.37781 -18.48103 -17.95288 -17.53660 -16.09725 -15.55919 -15.53122 -14.94293 -14.91338 -14.77084 -14.47740 -14.39033 -14.33980 -14.16414 -13.80679 -13.57242 -13.35006 -13.21892 -12.75774 -12.44636 -12.10792 -11.92616 -11.72354 -11.60963 -11.39555 -11.08688 -10.92535 -10.80744 -10.66029 -10.49188 -10.29334 -9.95281 -9.88833 -9.60424 -8.88249 -8.77011 -8.59736 -8.38526 -8.07543 -6.48983 -3.91022 1.58451 2.48503 2.59330 2.77661 3.15378 3.22995 3.26866 3.41840 3.77960 4.03174 4.18498 4.32960 4.55902 4.60891 4.75351 4.91731 4.94560 4.98982 5.14972 5.19683 5.20323 5.26172 5.33010 5.47085 5.65693 5.70567 5.75469 5.80623 5.85238 5.95028 5.98753 6.05150 6.11786 6.23109 6.34233 6.57557 6.80933 6.93038 7.10738 7.34175 7.47963 7.94702 8.21571 8.47868 8.83450 9.06910 9.42188 9.90145 10.67851 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.002276 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.455879 B =12299.795005 C =13085.615073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.726 5.726 14 C 0.708 3.292 15 O -0.597 6.597 16 N -0.631 5.631 17 C 0.131 3.869 18 C -0.124 4.124 19 C -0.007 4.007 20 C -0.225 4.225 21 C 0.061 3.939 22 N -0.297 5.297 23 N -0.481 5.481 24 H 0.438 0.562 25 C 0.057 3.943 26 C -0.125 4.125 27 C 0.109 3.891 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.406 0.594 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.314 -23.885 2.582 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.434 4.434 8 H 0.122 0.878 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.385 5.385 14 C 0.410 3.590 15 O -0.476 6.476 16 N -0.369 5.369 17 C 0.008 3.992 18 C -0.163 4.163 19 C -0.026 4.026 20 C -0.237 4.237 21 C -0.126 4.126 22 N -0.119 5.119 23 N -0.189 5.189 24 H 0.281 0.719 25 C -0.090 4.090 26 C -0.163 4.163 27 C -0.014 4.014 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.246 0.754 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.198 0.802 39 H 0.192 0.808 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.407 -24.121 3.717 26.156 hybrid contribution 0.422 0.808 -0.674 1.133 sum 9.829 -23.313 3.043 25.483 Atomic orbital electron populations 1.69605 1.05989 1.28600 1.49299 1.25322 0.95667 0.99910 0.96843 0.85875 0.78769 0.80200 0.79126 1.19798 1.20881 1.19800 1.19670 0.93411 0.82020 1.48325 0.87755 1.41782 1.09495 1.04442 1.62686 1.19771 0.88285 0.85020 0.85428 1.90481 1.13777 1.86895 1.57407 1.20785 0.91297 0.84930 1.03103 1.44975 1.11246 1.03377 1.78928 1.15761 0.84813 0.80599 0.77861 1.90886 1.14305 1.83956 1.58501 1.47192 1.05471 1.05944 1.78277 1.21416 1.00717 0.80087 0.97025 1.21990 0.94525 1.00939 0.98850 1.19423 0.94359 0.94592 0.94274 1.20103 1.06094 1.02094 0.95383 1.23813 0.98512 0.98642 0.91669 1.77362 1.11552 1.05238 1.17792 1.46300 1.38247 1.30079 1.04280 0.71873 1.22405 0.99000 0.98688 0.88955 1.21963 1.00830 0.94913 0.98609 1.21673 0.80306 1.01287 0.98183 0.91555 0.77003 0.89993 0.90119 0.75385 0.91993 0.88826 0.90839 0.91296 0.90546 0.80194 0.80822 0.91106 0.90660 0.91351 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.43 9.89 7.85 -10.98 -0.09 9.81 16 11 O -0.60 -15.27 15.24 5.55 0.08 -15.18 16 12 C 0.13 2.41 6.16 -5.19 -0.03 2.37 16 13 N -0.73 -12.52 5.44 -66.41 -0.36 -12.88 16 14 C 0.71 11.80 8.30 -86.92 -0.72 11.08 16 15 O -0.60 -11.81 15.79 5.29 0.08 -11.73 16 16 N -0.63 -7.85 2.97 -178.51 -0.53 -8.38 16 17 C 0.13 1.33 6.41 -3.71 -0.02 1.31 16 18 C -0.12 -1.02 5.24 -26.61 -0.14 -1.16 16 19 C -0.01 -0.05 2.51 -91.73 -0.23 -0.28 16 20 C -0.23 -1.74 4.80 -105.06 -0.50 -2.25 16 21 C 0.06 0.56 11.51 -17.37 -0.20 0.36 16 22 N -0.30 -3.03 12.70 30.62 0.39 -2.64 16 23 N -0.48 -3.32 7.36 30.45 0.22 -3.10 16 24 H 0.44 1.65 8.96 -182.61 -1.64 0.02 16 25 C 0.06 0.35 11.88 -17.22 -0.20 0.14 16 26 C -0.12 -1.04 5.24 -26.61 -0.14 -1.18 16 27 C 0.11 1.08 6.43 -3.71 -0.02 1.06 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 30 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.41 6.82 4.89 -40.82 -0.20 6.62 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.13 7.04 -51.93 -0.37 0.76 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 37 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 38 H 0.18 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.17 0.48 8.06 -52.49 -0.42 0.05 16 40 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.94 5.56 -51.92 -0.29 0.65 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -34.08 359.25 -8.56 -42.64 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -6.96 Total: 13.86 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: -2.55 Total: 13.41 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: 0.39 Total: -63.95 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: 0.17 Total: -26.91 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.08 -8.56 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358312659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.341 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.11 seconds