Wall clock time and date at job start Fri Apr 10 2020 18:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86795 * 120.00193 * 2 1 4 4 H 1.48503 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47270 * 300.00849 * 3 2 1 6 6 H 1.48503 * 109.47089 * 60.00408 * 3 2 1 7 7 C 1.38952 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00078 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34785 * 119.99625 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00121 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99670 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46873 * 180.02562 * 12 10 9 14 14 C 1.34778 * 119.99976 * 180.02562 * 13 12 10 15 15 O 1.21588 * 119.99726 * 4.97489 * 14 13 12 16 16 N 1.34768 * 120.00089 * 184.97977 * 14 13 12 17 17 C 1.46933 * 120.63061 * 355.73232 * 16 14 13 18 18 C 1.53196 * 108.77449 * 233.63214 * 17 16 14 19 19 C 1.53041 * 109.31452 * 305.36493 * 18 17 16 20 20 C 1.53038 * 109.54093 * 61.36111 * 19 18 17 21 21 C 1.46927 * 120.63357 * 175.75365 * 16 14 13 22 22 H 1.09002 * 109.70672 * 246.22471 * 21 16 14 23 23 C 1.50703 * 109.58592 * 6.58433 * 21 16 14 24 24 N 1.30500 * 125.65020 * 64.25897 * 23 21 16 25 25 C 1.34128 * 109.25208 * 180.02562 * 24 23 21 26 26 C 1.34658 * 108.02406 * 0.26644 * 25 24 23 27 27 N 1.35041 * 125.64602 * 244.29130 * 23 21 16 28 28 H 0.96998 * 126.39834 * 0.02562 * 27 23 21 29 29 H 0.96999 * 119.99946 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00565 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47626 * 60.00316 * 12 10 9 32 32 H 1.08998 * 109.47485 * 299.99837 * 12 10 9 33 33 H 0.97000 * 119.99668 * 359.97438 * 13 12 10 34 34 H 1.08997 * 109.58552 * 113.84766 * 17 16 14 35 35 H 1.08999 * 109.69986 * 353.48720 * 17 16 14 36 36 H 1.09002 * 109.49483 * 185.41126 * 18 17 16 37 37 H 1.09000 * 109.52216 * 65.33115 * 18 17 16 38 38 H 1.09005 * 109.45853 * 301.34807 * 19 18 17 39 39 H 1.08995 * 109.45972 * 181.39007 * 19 18 17 40 40 H 1.08998 * 109.50057 * 178.68629 * 20 19 18 41 41 H 1.09004 * 109.51880 * 58.60163 * 20 19 18 42 42 H 1.08002 * 125.98232 * 179.97438 * 25 24 23 43 43 H 1.08007 * 126.59351 * 179.70144 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0010 13 7 2.1957 -5.9765 -0.0017 14 6 1.7464 -7.2472 -0.0019 15 8 0.5547 -7.4706 -0.0928 16 7 2.6181 -8.2701 0.0987 17 6 4.0660 -8.0210 0.1154 18 6 4.7254 -8.8723 -0.9742 19 6 4.3377 -10.3392 -0.7744 20 6 2.8196 -10.4887 -0.8972 21 6 2.1386 -9.6557 0.1933 22 1 2.3860 -10.0642 1.1732 23 6 0.6450 -9.6881 -0.0050 24 7 0.0156 -9.3552 -1.0986 25 6 -1.3041 -9.5070 -0.9130 26 6 -1.5003 -9.9452 0.3451 27 7 -0.2637 -10.0658 0.9198 28 1 -0.0756 -10.3624 1.8239 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 0.0002 31 1 0.6160 -4.9205 -0.8903 32 1 0.6181 -4.9209 0.8897 33 1 3.1494 -5.7992 -0.0029 34 1 4.4726 -8.2947 1.0890 35 1 4.2596 -6.9659 -0.0780 36 1 5.8087 -8.7702 -0.9098 37 1 4.3859 -8.5365 -1.9541 38 1 4.6560 -10.6674 0.2151 39 1 4.8254 -10.9504 -1.5338 40 1 2.5464 -11.5372 -0.7779 41 1 2.4971 -10.1379 -1.8775 42 1 -2.0746 -9.3078 -1.6431 43 1 -2.4505 -10.1618 0.8106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358316925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:38 Heat of formation + Delta-G solvation = 25.258755 kcal Electronic energy + Delta-G solvation = -27556.498044 eV Core-core repulsion = 23638.969982 eV Total energy + Delta-G solvation = -3917.528062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 5.82 seconds Orbital eigenvalues (eV) -41.91173 -40.07243 -38.37545 -37.30207 -34.47775 -33.76096 -32.79693 -32.16645 -31.97457 -31.31441 -28.47461 -27.53599 -25.30531 -24.27740 -23.62363 -21.51524 -20.93804 -20.67907 -19.59653 -19.20732 -18.57873 -17.95091 -17.15047 -16.10569 -15.67928 -15.47636 -14.79999 -14.77381 -14.65359 -14.49700 -14.40472 -14.16148 -13.79551 -13.61155 -13.54667 -13.28102 -13.17887 -12.89335 -12.56768 -12.09353 -11.86739 -11.60971 -11.52028 -11.22916 -11.11672 -10.97350 -10.83502 -10.39104 -10.30505 -10.18571 -9.61937 -9.58253 -9.33524 -8.72481 -8.58212 -8.40986 -8.06725 -7.78404 -6.48615 -3.90460 2.18979 2.80987 3.12043 3.22940 3.24122 3.30702 3.44721 3.70099 3.79814 4.07220 4.19532 4.41800 4.58683 4.68084 4.73197 4.86780 4.94488 5.01076 5.20121 5.20799 5.28073 5.41367 5.53984 5.63772 5.63966 5.70448 5.83332 5.90527 5.96928 5.97222 6.08423 6.13692 6.19319 6.36720 6.47743 6.87631 7.05774 7.12149 7.48760 7.58323 7.95936 8.27148 8.48462 8.48818 8.94656 9.07741 9.43207 9.91145 10.68476 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.003047 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.256553 B = 9187.274829 C =10480.919686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.430 3.570 11 O -0.599 6.599 12 C 0.132 3.868 13 N -0.727 5.727 14 C 0.703 3.297 15 O -0.559 6.559 16 N -0.627 5.627 17 C 0.112 3.888 18 C -0.137 4.137 19 C -0.117 4.117 20 C -0.122 4.122 21 C 0.254 3.746 22 H 0.078 0.922 23 C 0.234 3.766 24 N -0.447 5.447 25 C -0.013 4.013 26 C -0.069 4.069 27 N -0.567 5.567 28 H 0.409 0.591 29 H 0.273 0.727 30 H 0.396 0.604 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.403 0.597 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.159 0.841 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.317 -22.787 2.285 23.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.216 3.784 11 O -0.485 6.485 12 C 0.003 3.997 13 N -0.387 5.387 14 C 0.405 3.595 15 O -0.434 6.434 16 N -0.367 5.367 17 C -0.012 4.012 18 C -0.175 4.175 19 C -0.155 4.155 20 C -0.161 4.161 21 C 0.148 3.852 22 H 0.096 0.904 23 C -0.029 4.029 24 N -0.167 5.167 25 C -0.163 4.163 26 C -0.202 4.202 27 N -0.171 5.171 28 H 0.245 0.755 29 H 0.083 0.917 30 H 0.229 0.771 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.243 0.757 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.176 0.824 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.432 -22.413 1.462 22.721 hybrid contribution -0.269 0.790 1.256 1.508 sum 3.163 -21.622 2.719 22.021 Atomic orbital electron populations 1.69628 1.06006 1.28354 1.49540 1.25323 0.95660 0.99906 0.96896 0.85763 0.79670 0.80876 0.77800 1.19147 1.20621 1.20656 1.19774 0.93460 0.82017 1.48061 0.87661 1.41794 1.09475 1.04457 1.62776 1.19794 0.88283 0.85046 0.85278 1.90476 1.13793 1.86924 1.57344 1.20716 0.91236 0.84882 1.02849 1.45012 1.11021 1.03341 1.79305 1.15832 0.85135 0.80427 0.78127 1.91052 1.13907 1.82121 1.56324 1.47161 1.05733 1.04396 1.79430 1.21671 0.79608 1.00791 0.99091 1.21944 1.00551 0.95255 0.99789 1.21516 0.95285 0.96577 1.02096 1.21913 0.95006 0.99251 0.99978 1.19008 0.85290 0.82035 0.98829 0.90441 1.22215 0.92221 1.01877 0.86609 1.70081 1.05100 1.16175 1.25373 1.22079 0.93614 1.04926 0.95679 1.22429 0.88423 1.12652 0.96669 1.43000 1.06870 1.52908 1.14288 0.75458 0.91683 0.77051 0.90095 0.90519 0.75729 0.91345 0.89501 0.90515 0.90994 0.91801 0.91278 0.90875 0.89769 0.82397 0.81610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.26 13.05 55.50 0.72 -23.54 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.97 5.29 -10.96 -0.06 -14.03 16 10 C 0.43 10.17 7.85 -10.98 -0.09 10.08 16 11 O -0.60 -15.57 15.24 5.55 0.08 -15.49 16 12 C 0.13 2.59 6.16 -5.19 -0.03 2.56 16 13 N -0.73 -13.05 5.44 -66.41 -0.36 -13.41 16 14 C 0.70 12.16 8.21 -86.93 -0.71 11.45 16 15 O -0.56 -11.08 11.39 5.29 0.06 -11.02 16 16 N -0.63 -8.25 2.97 -172.22 -0.51 -8.76 16 17 C 0.11 1.15 6.39 -3.70 -0.02 1.13 16 18 C -0.14 -1.17 6.08 -26.61 -0.16 -1.33 16 19 C -0.12 -0.86 5.88 -26.69 -0.16 -1.01 16 20 C -0.12 -1.15 5.34 -26.61 -0.14 -1.29 16 21 C 0.25 2.86 3.43 -68.75 -0.24 2.62 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 23 C 0.23 3.24 4.51 -155.42 -0.70 2.54 16 24 N -0.45 -7.44 9.10 -10.82 -0.10 -7.53 16 25 C -0.01 -0.20 11.51 -17.82 -0.21 -0.40 16 26 C -0.07 -0.83 12.04 -16.56 -0.20 -1.03 16 27 N -0.57 -6.54 6.15 -10.23 -0.06 -6.60 16 28 H 0.41 3.31 8.96 -40.82 -0.37 2.94 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.40 9.73 7.90 -40.82 -0.32 9.41 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.40 7.07 4.92 -40.82 -0.20 6.87 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.00 5.63 -51.93 -0.29 0.71 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 42 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -34.79 352.43 -8.59 -43.39 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -5.76 Total: 18.59 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: -2.90 Total: 17.36 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -0.37 Total: -73.88 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.14 Total: -26.51 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.79 -8.59 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358316925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.645 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.82 seconds