Wall clock time and date at job start Fri Apr 10 2020 18:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86795 * 120.00193 * 2 1 4 4 H 1.48503 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47270 * 300.00849 * 3 2 1 6 6 H 1.48503 * 109.47089 * 60.00408 * 3 2 1 7 7 C 1.38952 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00078 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.34785 * 119.99625 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00121 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99670 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46873 * 180.02562 * 12 10 9 14 14 C 1.34778 * 119.99976 * 180.02562 * 13 12 10 15 15 O 1.21588 * 119.99726 * 4.97489 * 14 13 12 16 16 N 1.34768 * 120.00089 * 184.97977 * 14 13 12 17 17 C 1.46933 * 120.63061 * 355.73232 * 16 14 13 18 18 C 1.53196 * 108.77449 * 233.63214 * 17 16 14 19 19 C 1.53041 * 109.31452 * 305.36493 * 18 17 16 20 20 C 1.53038 * 109.54093 * 61.36111 * 19 18 17 21 21 C 1.46927 * 120.63357 * 175.75365 * 16 14 13 22 22 H 1.09002 * 109.70672 * 246.22471 * 21 16 14 23 23 C 1.50703 * 109.58592 * 6.58433 * 21 16 14 24 24 N 1.30500 * 125.65020 * 64.25897 * 23 21 16 25 25 C 1.34128 * 109.25208 * 180.02562 * 24 23 21 26 26 C 1.34658 * 108.02406 * 0.26644 * 25 24 23 27 27 N 1.35041 * 125.64602 * 244.29130 * 23 21 16 28 28 H 0.96998 * 126.39834 * 0.02562 * 27 23 21 29 29 H 0.96999 * 119.99946 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00565 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47626 * 60.00316 * 12 10 9 32 32 H 1.08998 * 109.47485 * 299.99837 * 12 10 9 33 33 H 0.97000 * 119.99668 * 359.97438 * 13 12 10 34 34 H 1.08997 * 109.58552 * 113.84766 * 17 16 14 35 35 H 1.08999 * 109.69986 * 353.48720 * 17 16 14 36 36 H 1.09002 * 109.49483 * 185.41126 * 18 17 16 37 37 H 1.09000 * 109.52216 * 65.33115 * 18 17 16 38 38 H 1.09005 * 109.45853 * 301.34807 * 19 18 17 39 39 H 1.08995 * 109.45972 * 181.39007 * 19 18 17 40 40 H 1.08998 * 109.50057 * 178.68629 * 20 19 18 41 41 H 1.09004 * 109.51880 * 58.60163 * 20 19 18 42 42 H 1.08002 * 125.98232 * 179.97438 * 25 24 23 43 43 H 1.08007 * 126.59351 * 179.70144 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8895 2.3963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0010 13 7 2.1957 -5.9765 -0.0017 14 6 1.7464 -7.2472 -0.0019 15 8 0.5547 -7.4706 -0.0928 16 7 2.6181 -8.2701 0.0987 17 6 4.0660 -8.0210 0.1154 18 6 4.7254 -8.8723 -0.9742 19 6 4.3377 -10.3392 -0.7744 20 6 2.8196 -10.4887 -0.8972 21 6 2.1386 -9.6557 0.1933 22 1 2.3860 -10.0642 1.1732 23 6 0.6450 -9.6881 -0.0050 24 7 0.0156 -9.3552 -1.0986 25 6 -1.3041 -9.5070 -0.9130 26 6 -1.5003 -9.9452 0.3451 27 7 -0.2637 -10.0658 0.9198 28 1 -0.0756 -10.3624 1.8239 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 0.0002 31 1 0.6160 -4.9205 -0.8903 32 1 0.6181 -4.9209 0.8897 33 1 3.1494 -5.7992 -0.0029 34 1 4.4726 -8.2947 1.0890 35 1 4.2596 -6.9659 -0.0780 36 1 5.8087 -8.7702 -0.9098 37 1 4.3859 -8.5365 -1.9541 38 1 4.6560 -10.6674 0.2151 39 1 4.8254 -10.9504 -1.5338 40 1 2.5464 -11.5372 -0.7779 41 1 2.4971 -10.1379 -1.8775 42 1 -2.0746 -9.3078 -1.6431 43 1 -2.4505 -10.1618 0.8106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358316925.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:31 Heat of formation + Delta-G solvation = -0.752614 kcal Electronic energy + Delta-G solvation = -27557.625982 eV Core-core repulsion = 23638.969982 eV Total energy + Delta-G solvation = -3918.656000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -42.90209 -41.28179 -40.14978 -38.43605 -36.26456 -35.40091 -33.75772 -33.37427 -33.16485 -32.89507 -29.45698 -29.10551 -26.70605 -25.74459 -24.48576 -22.50561 -22.01913 -21.64046 -21.30809 -20.45157 -20.04707 -19.52953 -18.24273 -17.46122 -17.25914 -16.87721 -16.50517 -16.06910 -15.90118 -15.74624 -15.41261 -15.34351 -15.21354 -14.79134 -14.53691 -14.42429 -14.22109 -14.01304 -13.81949 -13.55711 -13.47635 -13.32928 -12.91710 -12.45570 -12.30896 -12.11346 -11.97605 -11.65506 -11.59088 -11.58748 -11.32613 -10.63344 -10.56994 -10.46695 -10.13158 -10.04565 -9.50095 -8.83736 -8.51884 -6.02381 1.18994 1.34449 1.42181 1.56501 1.70272 1.88087 2.18377 2.26558 2.36520 2.59810 2.94710 3.15101 3.16999 3.52565 3.83677 3.96028 3.98445 4.11160 4.19622 4.28708 4.38207 4.42771 4.44431 4.53067 4.64103 4.69107 4.86299 4.92137 4.99389 5.07114 5.21259 5.25340 5.35778 5.37379 5.41206 5.51203 5.55684 5.88023 5.91604 6.10435 6.46543 6.74532 6.97478 7.02165 7.41464 7.49490 7.64302 7.92477 8.65440 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.003047 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.256553 B = 9187.274829 C =10480.919686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.149 3.851 13 N -0.730 5.730 14 C 0.696 3.304 15 O -0.587 6.587 16 N -0.621 5.621 17 C 0.106 3.894 18 C -0.133 4.133 19 C -0.110 4.110 20 C -0.115 4.115 21 C 0.247 3.753 22 H 0.113 0.887 23 C 0.222 3.778 24 N -0.492 5.492 25 C -0.057 4.057 26 C -0.052 4.052 27 N -0.558 5.558 28 H 0.427 0.573 29 H 0.280 0.720 30 H 0.398 0.602 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.405 0.595 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.160 0.840 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.359 -24.023 3.693 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.511 6.511 12 C 0.020 3.980 13 N -0.391 5.391 14 C 0.398 3.602 15 O -0.464 6.464 16 N -0.360 5.360 17 C -0.016 4.016 18 C -0.172 4.172 19 C -0.147 4.147 20 C -0.155 4.155 21 C 0.142 3.858 22 H 0.131 0.869 23 C -0.042 4.042 24 N -0.213 5.213 25 C -0.206 4.206 26 C -0.187 4.187 27 N -0.163 5.163 28 H 0.266 0.734 29 H 0.089 0.911 30 H 0.232 0.768 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.245 0.755 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.177 0.823 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.491 -23.705 2.888 24.298 hybrid contribution -0.616 1.090 0.808 1.490 sum 3.874 -22.614 3.696 23.240 Atomic orbital electron populations 1.69696 1.07088 1.29590 1.49353 1.26165 0.96545 1.02761 0.95741 0.84787 0.78149 0.76562 0.78321 1.19305 1.19673 1.19524 1.19792 0.92980 0.83475 1.50337 0.89490 1.41842 1.09524 1.04623 1.63452 1.20381 0.88118 0.85840 0.83519 1.90450 1.15069 1.87549 1.57988 1.20427 0.90990 0.83434 1.03117 1.44977 1.10684 1.03417 1.79977 1.16039 0.85378 0.80702 0.78115 1.91040 1.15270 1.82575 1.57520 1.47253 1.06412 1.04263 1.78079 1.21911 0.78076 1.00344 1.01289 1.21932 1.01653 0.95840 0.97732 1.21510 0.93506 0.95650 1.04026 1.21862 0.96414 0.99666 0.97515 1.19463 0.84056 0.81081 1.01214 0.86900 1.22618 0.93466 1.01647 0.86440 1.69988 1.06199 1.17659 1.27428 1.22374 0.93536 1.07206 0.97440 1.22900 0.89749 1.10257 0.95746 1.42998 1.06332 1.52104 1.14862 0.73406 0.91067 0.76844 0.90270 0.89649 0.75525 0.88480 0.91248 0.88214 0.93428 0.89263 0.89948 0.89047 0.93138 0.82302 0.78220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 1.00 42.28 29.55 68.60 2.03 44.31 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.34 -18.92 9.68 84.04 0.81 -18.10 16 8 H 0.09 5.13 7.16 -2.91 -0.02 5.10 16 9 N -0.56 -29.06 5.29 -306.98 -1.62 -30.69 16 10 C 0.43 20.98 7.85 87.65 0.69 21.67 16 11 O -0.62 -33.05 15.24 -3.05 -0.05 -33.10 16 12 C 0.15 5.98 6.16 85.63 0.53 6.51 16 13 N -0.73 -26.51 5.44 -482.29 -2.62 -29.13 16 14 C 0.70 24.09 8.21 179.06 1.47 25.56 16 15 O -0.59 -23.49 11.39 -3.99 -0.05 -23.54 16 16 N -0.62 -15.68 2.97 -817.04 -2.43 -18.11 16 17 C 0.11 2.01 6.39 86.36 0.55 2.56 16 18 C -0.13 -2.01 6.08 30.67 0.19 -1.83 16 19 C -0.11 -1.26 5.88 30.62 0.18 -1.08 16 20 C -0.12 -1.96 5.34 30.67 0.16 -1.80 16 21 C 0.25 5.08 3.43 44.23 0.15 5.23 16 22 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 23 C 0.22 5.96 4.51 138.13 0.62 6.59 16 24 N -0.49 -16.69 9.10 -188.14 -1.71 -18.40 16 25 C -0.06 -1.72 11.51 83.52 0.96 -0.76 16 26 C -0.05 -1.20 12.04 83.08 1.00 -0.20 16 27 N -0.56 -11.91 6.15 -186.26 -1.15 -13.06 16 28 H 0.43 5.79 8.96 -92.71 -0.83 4.96 16 29 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.40 20.05 7.90 -92.71 -0.73 19.31 16 31 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.40 14.39 4.92 -92.71 -0.46 13.94 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.57 5.63 -2.39 -0.01 1.56 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.21 8.07 -2.38 -0.02 1.19 16 42 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 43 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -77.06 352.43 -0.47 -77.53 By element: Atomic # 1 Polarization: 50.31 SS G_CDS: -0.94 Total: 49.36 kcal Atomic # 6 Polarization: 36.42 SS G_CDS: 7.78 Total: 44.20 kcal Atomic # 7 Polarization: -149.52 SS G_CDS: -9.25 Total: -158.77 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -0.09 Total: -56.63 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -77.06 -0.47 -77.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358316925.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.781 kcal (2) G-P(sol) polarization free energy of solvation -77.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds