Wall clock time and date at job start Fri Apr 10 2020 18:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39872 * 126.03910 * 2 1 4 4 N 1.30842 * 108.19764 * 179.81755 * 3 2 1 5 5 N 1.40076 * 108.20657 * 0.44422 * 4 3 2 6 6 C 1.46509 * 126.03825 * 179.73880 * 5 4 3 7 7 H 1.09004 * 110.88157 * 22.54421 * 6 5 4 8 8 C 1.55155 * 111.00270 * 258.62363 * 6 5 4 9 9 C 1.54323 * 102.94059 * 206.41971 * 8 6 5 10 10 N 1.47027 * 107.27071 * 22.19164 * 9 8 6 11 11 C 1.34775 * 125.64640 * 181.09016 * 10 9 8 12 12 O 1.21595 * 119.99419 * 179.97438 * 11 10 9 13 13 N 1.34773 * 120.00168 * 359.96276 * 11 10 9 14 14 C 1.46502 * 119.99954 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47315 * 180.02562 * 14 13 11 16 16 O 1.21293 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00069 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99853 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00277 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99924 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00061 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99808 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46973 * 89.99776 * 22 20 18 24 24 H 1.48500 * 109.46963 * 209.99590 * 22 20 18 25 25 H 1.48489 * 109.47375 * 329.99797 * 22 20 18 26 26 C 1.47426 * 108.70154 * 1.06209 * 10 9 8 27 27 C 1.34951 * 107.93039 * 359.71277 * 5 4 3 28 28 H 1.09002 * 109.47152 * 269.68807 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68908 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68888 * 1 2 3 31 31 H 1.07999 * 125.89879 * 0.02562 * 3 2 1 32 32 H 1.08996 * 110.72129 * 324.78842 * 8 6 5 33 33 H 1.08998 * 110.71894 * 88.05850 * 8 6 5 34 34 H 1.08999 * 109.88225 * 262.78068 * 9 8 6 35 35 H 1.08994 * 109.88353 * 141.60901 * 9 8 6 36 36 H 0.96998 * 120.00150 * 359.97438 * 13 11 10 37 37 H 1.09002 * 109.47410 * 300.00646 * 14 13 11 38 38 H 1.09004 * 109.46898 * 60.00273 * 14 13 11 39 39 H 0.96998 * 120.00448 * 0.02562 * 17 15 14 40 40 H 0.97002 * 120.00039 * 180.02562 * 21 20 18 41 41 H 1.08997 * 110.36537 * 217.02800 * 26 10 9 42 42 H 1.09001 * 110.37176 * 94.70876 * 26 10 9 43 43 H 1.07997 * 126.13328 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7301 0.0040 5 7 3.5844 -0.6706 -0.0037 6 6 4.7746 -1.5249 -0.0079 7 1 5.6386 -0.9895 0.3858 8 6 5.0603 -2.0735 -1.4309 9 6 5.8182 -3.3879 -1.1488 10 7 5.4735 -3.8058 0.2181 11 6 5.9484 -4.8981 0.8488 12 8 5.5930 -5.1468 1.9847 13 7 6.8171 -5.7147 0.2204 14 6 7.3338 -6.9017 0.9062 15 6 8.2795 -7.6379 -0.0074 16 8 8.5006 -7.2126 -1.1216 17 7 8.8797 -8.7688 0.4136 18 6 9.7405 -9.4383 -0.4173 19 1 9.9373 -9.0596 -1.4094 20 6 10.3588 -10.6045 0.0165 21 7 10.1189 -11.0656 1.2235 22 14 11.5311 -11.5170 -1.1159 23 1 12.9110 -11.0058 -0.9159 24 1 11.4910 -12.9684 -0.8045 25 1 11.1235 -11.3022 -2.5275 26 6 4.5228 -2.8318 0.7846 27 6 2.3031 -1.0942 -0.0060 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9951 2.1578 0.0004 32 1 4.1293 -2.2714 -1.9620 33 1 5.6863 -1.3804 -1.9929 34 1 6.8925 -3.2201 -1.2252 35 1 5.5090 -4.1540 -1.8597 36 1 7.1002 -5.5166 -0.6860 37 1 7.8638 -6.5979 1.8089 38 1 6.5043 -7.5560 1.1747 39 1 8.7026 -9.1092 1.3045 40 1 10.5508 -11.8795 1.5265 41 1 4.7243 -2.6775 1.8446 42 1 3.4978 -3.1728 0.6382 43 1 1.9723 -2.1223 -0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359570998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:45 Heat of formation + Delta-G solvation = -2.627292 kcal Electronic energy + Delta-G solvation = -25958.088353 eV Core-core repulsion = 22039.351061 eV Total energy + Delta-G solvation = -3918.737292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.35402 -41.41071 -40.17735 -38.75699 -36.26401 -35.38819 -34.45515 -33.37279 -32.63926 -31.51181 -29.97125 -28.88778 -27.33640 -26.33391 -24.52089 -23.29018 -21.55012 -21.44266 -21.22242 -20.84519 -20.12660 -19.47069 -18.13625 -17.51777 -17.29486 -16.92073 -16.58479 -16.26165 -15.98470 -15.89069 -15.65828 -15.26364 -14.90988 -14.82906 -14.37958 -14.29044 -14.00655 -13.91570 -13.73195 -13.64959 -13.54028 -13.38596 -12.93781 -12.90544 -12.67620 -12.57644 -12.45473 -12.12707 -12.03667 -11.57038 -11.53988 -11.50255 -10.56596 -10.40861 -10.38384 -10.09947 -9.71512 -9.24406 -8.51003 -6.01204 0.90475 1.06237 1.36521 1.43340 1.55589 1.68173 1.88021 1.88237 1.99290 2.27704 2.77637 3.10080 3.15280 3.16308 3.37481 3.70554 3.79314 3.93740 4.07381 4.10821 4.18925 4.39784 4.43405 4.44206 4.49071 4.56587 4.62809 4.64968 4.76986 4.86685 4.96477 5.03024 5.05887 5.24105 5.29038 5.33819 5.38609 5.77427 5.82011 5.91848 6.08322 6.47493 6.74470 6.78618 7.03357 7.34290 7.45257 7.93850 8.65777 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.040519 B = 0.001933 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.873286 B =14478.110170 C =14784.777238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.249 4.249 3 C 0.044 3.956 4 N -0.329 5.329 5 N -0.368 5.368 6 C 0.155 3.845 7 H 0.118 0.882 8 C -0.122 4.122 9 C 0.096 3.904 10 N -0.633 5.633 11 C 0.725 3.275 12 O -0.626 6.626 13 N -0.719 5.719 14 C 0.141 3.859 15 C 0.434 3.566 16 O -0.623 6.623 17 N -0.559 5.559 18 C -0.337 4.337 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.270 1.270 26 C 0.124 3.876 27 C 0.047 3.953 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.205 0.795 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.399 0.601 40 H 0.280 0.720 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.609 20.249 -3.405 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.260 4.260 3 C -0.142 4.142 4 N -0.149 5.149 5 N -0.150 5.150 6 C 0.051 3.949 7 H 0.136 0.864 8 C -0.161 4.161 9 C -0.027 4.027 10 N -0.371 5.371 11 C 0.427 3.573 12 O -0.507 6.507 13 N -0.377 5.377 14 C 0.012 3.988 15 C 0.221 3.779 16 O -0.511 6.511 17 N -0.194 5.194 18 C -0.466 4.466 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.194 1.194 26 C 0.000 4.000 27 C -0.098 4.098 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.221 0.779 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.249 0.751 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.242 20.347 -3.169 25.619 hybrid contribution 0.000 -1.009 -0.154 1.020 sum -15.242 19.338 -3.323 24.846 Atomic orbital electron populations 1.20099 0.87573 1.03057 1.02101 1.20522 0.98406 0.91483 1.15631 1.24320 0.89536 1.01235 0.99092 1.77339 1.22633 0.89212 1.25724 1.48394 1.05186 1.04208 1.57214 1.22239 0.86234 0.88725 0.97710 0.86397 1.23015 1.02482 0.95363 0.95249 1.22249 1.01078 0.97014 0.82351 1.47217 1.48505 1.24609 1.16783 1.15316 0.79146 0.79432 0.83448 1.90906 1.65187 1.75748 1.18871 1.44660 1.47519 1.25864 1.19617 1.20628 0.97050 0.86776 0.94316 1.20361 0.85476 0.83407 0.88657 1.90466 1.68238 1.69369 1.23075 1.41829 1.39291 1.21539 1.16734 1.19739 1.21819 1.06366 0.98674 0.89476 1.26131 0.99540 0.97375 0.98114 1.69680 1.44019 1.23562 1.18286 0.84862 0.77875 0.77244 0.77970 1.19618 1.19723 1.19411 1.22240 0.93644 0.85845 0.98300 1.22742 0.83905 1.01319 1.01809 0.91733 0.91403 0.90851 0.77857 0.88794 0.87377 0.90031 0.89730 0.75117 0.88924 0.88817 0.76678 0.91083 0.90455 0.89542 0.79212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.37 71.24 0.74 0.10 16 2 C -0.25 -3.61 6.10 -20.14 -0.12 -3.73 16 3 C 0.04 0.71 11.96 85.24 1.02 1.73 16 4 N -0.33 -6.83 12.58 -57.02 -0.72 -7.54 16 5 N -0.37 -6.51 3.65 -320.89 -1.17 -7.68 16 6 C 0.15 2.43 4.16 46.38 0.19 2.63 16 7 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 8 C -0.12 -1.51 6.64 31.78 0.21 -1.30 16 9 C 0.10 1.55 6.15 86.73 0.53 2.09 16 10 N -0.63 -14.42 3.33 -829.76 -2.76 -17.18 16 11 C 0.73 22.84 8.49 179.06 1.52 24.36 16 12 O -0.63 -24.00 16.60 -4.02 -0.07 -24.07 16 13 N -0.72 -23.41 5.49 -482.28 -2.65 -26.06 16 14 C 0.14 5.08 6.15 85.63 0.53 5.61 16 15 C 0.43 19.64 7.85 87.66 0.69 20.32 16 16 O -0.62 -31.41 15.24 -3.07 -0.05 -31.46 16 17 N -0.56 -27.62 5.29 -306.99 -1.62 -29.25 16 18 C -0.34 -18.29 9.68 84.04 0.81 -17.47 16 19 H 0.09 4.97 7.16 -2.91 -0.02 4.94 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 21 N -0.92 -48.19 13.05 21.66 0.28 -47.90 16 22 Si 1.00 41.27 29.55 68.60 2.03 43.30 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 C 0.12 2.34 6.34 86.85 0.55 2.89 16 27 C 0.05 0.71 10.48 83.54 0.88 1.58 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.41 12.98 6.42 -92.71 -0.60 12.39 16 37 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 39 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 40 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 41 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 42 H 0.09 1.42 6.38 -2.39 -0.02 1.40 16 43 H 0.19 1.94 6.98 -2.91 -0.02 1.92 16 Total: -1.00 -70.59 366.61 1.02 -69.57 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.27 Total: 39.57 kcal Atomic # 6 Polarization: 30.69 SS G_CDS: 8.01 Total: 38.70 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -8.63 Total: -135.61 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -0.11 Total: -55.52 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -70.59 1.02 -69.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359570998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.939 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds