Wall clock time and date at job start Fri Apr 10 2020 18:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 120.00474 * 2 1 4 4 H 1.48504 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47010 * 299.99544 * 3 2 1 6 6 H 1.48492 * 109.47142 * 59.99839 * 3 2 1 7 7 C 1.38955 * 119.99539 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00227 * 180.02562 * 7 2 1 9 9 N 1.37100 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99679 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00243 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99927 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47040 * 179.97438 * 12 10 9 14 14 C 1.34775 * 119.99532 * 179.97438 * 13 12 10 15 15 O 1.21581 * 120.00432 * 5.07788 * 14 13 12 16 16 N 1.34779 * 119.99718 * 185.07543 * 14 13 12 17 17 C 1.46927 * 120.62929 * 354.94291 * 16 14 13 18 18 C 1.53195 * 108.77434 * 126.41301 * 17 16 14 19 19 C 1.53045 * 109.30991 * 54.63426 * 18 17 16 20 20 C 1.53032 * 109.53866 * 298.63521 * 19 18 17 21 21 H 1.08999 * 109.52888 * 301.39606 * 20 19 18 22 22 C 1.50703 * 109.49736 * 181.31874 * 20 19 18 23 23 C 1.39881 * 125.89599 * 275.39445 * 22 20 19 24 24 C 1.35315 * 107.91533 * 180.14054 * 23 22 20 25 25 N 1.34949 * 107.75153 * 359.64480 * 24 23 22 26 26 H 0.96992 * 126.04007 * 180.20273 * 25 24 23 27 27 N 1.30838 * 125.90150 * 95.13582 * 22 20 19 28 28 C 1.46927 * 120.63201 * 174.96844 * 16 14 13 29 29 H 0.97009 * 119.99461 * 0.02562 * 1 2 3 30 30 H 0.96992 * 120.00142 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.47143 * 59.99702 * 12 10 9 32 32 H 1.08991 * 109.46958 * 299.99614 * 12 10 9 33 33 H 0.96994 * 119.99881 * 0.02562 * 13 12 10 34 34 H 1.08993 * 109.58988 * 246.19925 * 17 16 14 35 35 H 1.08998 * 109.58948 * 6.62888 * 17 16 14 36 36 H 1.08999 * 109.50153 * 174.58229 * 18 17 16 37 37 H 1.09001 * 109.49882 * 294.68443 * 18 17 16 38 38 H 1.09002 * 109.45757 * 178.61394 * 19 18 17 39 39 H 1.09000 * 109.46127 * 58.66026 * 19 18 17 40 40 H 1.07999 * 126.04074 * 0.02562 * 23 22 20 41 41 H 1.08003 * 126.12257 * 179.90778 * 24 23 22 42 42 H 1.09000 * 109.58892 * 113.79597 * 28 16 14 43 43 H 1.09001 * 109.58190 * 353.37316 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8896 2.3963 -1.2125 6 1 1.8895 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2036 0.0010 9 7 1.3231 -2.3907 0.0005 10 6 1.9969 -3.5579 0.0016 11 8 3.2099 -3.5581 0.0021 12 6 1.2433 -4.8630 0.0010 13 7 2.1953 -5.9766 0.0017 14 6 1.7458 -7.2472 0.0019 15 8 0.5544 -7.4707 -0.0917 16 7 2.6172 -8.2702 0.1058 17 6 4.0655 -8.0225 0.1085 18 6 4.6764 -8.6832 1.3483 19 6 4.2919 -10.1643 1.3738 20 6 2.7696 -10.2965 1.4567 21 1 2.4083 -9.7921 2.3528 22 6 2.3937 -11.7548 1.5144 23 6 2.2334 -12.6046 0.4149 24 6 1.8931 -13.8285 0.8810 25 7 1.8475 -13.7579 2.2278 26 1 1.6323 -14.4867 2.8305 27 7 2.1656 -12.4459 2.6017 28 6 2.1370 -9.6542 0.2181 29 1 -0.4850 0.8402 -0.0004 30 1 0.3532 -2.3906 0.0005 31 1 0.6177 -4.9209 -0.8897 32 1 0.6157 -4.9205 0.8902 33 1 3.1489 -5.7994 0.0029 34 1 4.5108 -8.4495 -0.7900 35 1 4.2526 -6.9491 0.1368 36 1 5.7618 -8.5897 1.3128 37 1 4.2977 -8.1935 2.2454 38 1 4.7458 -10.6424 2.2419 39 1 4.6495 -10.6481 0.4648 40 1 2.3574 -12.3315 -0.6226 41 1 1.6974 -14.7059 0.2824 42 1 2.4250 -10.2143 -0.6715 43 1 1.0516 -9.6572 0.3189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588747365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:23:43 Heat of formation + Delta-G solvation = 10.769681 kcal Electronic energy + Delta-G solvation = -26398.565976 eV Core-core repulsion = 22480.409620 eV Total energy + Delta-G solvation = -3918.156356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54058 -40.24221 -38.39562 -37.43969 -34.51083 -33.94568 -33.36622 -32.10516 -31.34825 -30.39202 -29.89930 -27.64573 -25.36239 -24.44460 -23.68075 -21.84581 -21.58879 -19.70777 -19.62659 -19.21677 -18.42729 -18.27440 -17.75401 -16.12892 -15.58093 -15.52745 -15.09537 -14.95883 -14.82244 -14.45529 -14.37085 -14.17273 -13.97568 -13.82266 -13.56657 -13.31090 -13.17978 -13.03818 -12.57488 -12.13661 -11.87605 -11.61779 -11.56354 -11.17963 -11.12344 -11.06326 -10.91573 -10.80050 -10.39220 -10.30370 -9.89996 -9.65385 -9.62452 -9.02621 -8.88194 -8.59693 -8.39952 -8.07489 -6.49187 -3.91009 1.60024 2.45614 2.53293 2.81327 3.11942 3.23990 3.30686 3.40550 3.77894 4.01043 4.16896 4.29097 4.47737 4.68355 4.69311 4.78578 4.90722 4.96051 5.16244 5.19733 5.21578 5.34587 5.42265 5.44192 5.62111 5.63719 5.69701 5.75886 5.88954 5.93266 5.99207 6.05210 6.11755 6.15471 6.31586 6.53455 6.80322 6.96237 7.08448 7.39594 7.48425 7.95216 8.20398 8.47817 8.82176 9.07120 9.42362 9.90149 10.67808 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.034492 B = 0.002140 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.589277 B =13081.691628 C =13501.785065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.430 3.570 11 O -0.598 6.598 12 C 0.127 3.873 13 N -0.725 5.725 14 C 0.709 3.291 15 O -0.595 6.595 16 N -0.630 5.630 17 C 0.107 3.893 18 C -0.135 4.135 19 C -0.105 4.105 20 C -0.024 4.024 21 H 0.090 0.910 22 C 0.091 3.909 23 C -0.266 4.266 24 C 0.056 3.944 25 N -0.480 5.480 26 H 0.438 0.562 27 N -0.292 5.292 28 C 0.144 3.856 29 H 0.273 0.727 30 H 0.396 0.604 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.406 0.594 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.149 0.851 41 H 0.176 0.824 42 H 0.069 0.931 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 -25.948 1.090 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.384 5.384 14 C 0.411 3.589 15 O -0.474 6.474 16 N -0.368 5.368 17 C -0.016 4.016 18 C -0.173 4.173 19 C -0.143 4.143 20 C -0.046 4.046 21 H 0.108 0.892 22 C -0.077 4.077 23 C -0.296 4.296 24 C -0.091 4.091 25 N -0.188 5.188 26 H 0.282 0.718 27 N -0.115 5.115 28 C 0.020 3.980 29 H 0.083 0.917 30 H 0.230 0.770 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.247 0.753 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.193 0.807 42 H 0.087 0.913 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.377 -25.859 2.282 26.510 hybrid contribution 0.106 0.384 -0.577 0.701 sum 5.482 -25.475 1.704 26.114 Atomic orbital electron populations 1.69628 1.06000 1.28372 1.49471 1.25331 0.95675 0.99931 0.96889 0.85757 0.79668 0.80857 0.77792 1.19146 1.20644 1.20654 1.19775 0.93469 0.81988 1.48072 0.87630 1.41796 1.09507 1.04456 1.62706 1.19771 0.88283 0.85016 0.85385 1.90483 1.13770 1.86896 1.57373 1.20794 0.91295 0.84900 1.03153 1.44963 1.11276 1.03316 1.78890 1.15732 0.84762 0.80572 0.77878 1.90892 1.14267 1.83909 1.58310 1.47141 1.05615 1.05745 1.78319 1.21705 0.80224 1.01379 0.98310 1.21938 1.01053 0.95494 0.98822 1.21500 0.93602 0.96542 1.02683 1.19940 0.96505 0.87579 1.00547 0.89166 1.22117 0.98549 0.96246 0.90742 1.21461 1.14921 0.92819 1.00368 1.22601 1.01136 1.00211 0.85149 1.46348 1.56263 1.10292 1.05918 0.71841 1.77326 1.22549 0.88869 1.22720 1.21339 1.00689 0.80010 0.96007 0.91669 0.77009 0.89934 0.90093 0.75350 0.91112 0.89611 0.90213 0.91019 0.91467 0.91276 0.83321 0.80694 0.91277 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.11 2.99 7.16 -52.48 -0.38 2.62 16 9 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 10 C 0.43 9.93 7.85 -10.98 -0.09 9.84 16 11 O -0.60 -15.28 15.24 5.55 0.08 -15.20 16 12 C 0.13 2.41 6.16 -5.19 -0.03 2.38 16 13 N -0.72 -12.60 5.44 -66.42 -0.36 -12.96 16 14 C 0.71 12.03 8.30 -86.92 -0.72 11.31 16 15 O -0.59 -11.95 15.78 5.29 0.08 -11.87 16 16 N -0.63 -8.16 2.97 -178.50 -0.53 -8.69 16 17 C 0.11 1.09 6.43 -3.71 -0.02 1.07 16 18 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 19 C -0.10 -0.89 5.15 -26.69 -0.14 -1.02 16 20 C -0.02 -0.25 2.80 -91.66 -0.26 -0.50 16 21 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 22 C 0.09 0.94 6.13 -82.40 -0.51 0.44 16 23 C -0.27 -2.21 9.96 -40.01 -0.40 -2.61 16 24 C 0.06 0.36 11.99 -17.22 -0.21 0.15 16 25 N -0.48 -3.61 7.36 30.45 0.22 -3.39 16 26 H 0.44 1.86 8.96 -182.61 -1.64 0.22 16 27 N -0.29 -3.26 12.70 33.67 0.43 -2.83 16 28 C 0.14 1.62 5.40 -3.71 -0.02 1.60 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.40 9.53 7.90 -40.82 -0.32 9.21 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.41 6.84 4.89 -40.82 -0.20 6.64 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.95 5.57 -51.93 -0.29 0.66 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.15 1.00 7.30 -52.49 -0.38 0.62 16 41 H 0.18 0.43 8.06 -52.48 -0.42 0.01 16 42 H 0.07 0.65 7.05 -51.93 -0.37 0.29 16 43 H 0.10 1.30 7.03 -51.93 -0.37 0.93 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -34.32 357.50 -8.71 -43.03 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -6.88 Total: 14.54 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: -2.79 Total: 13.46 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: 0.43 Total: -64.92 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: 0.17 Total: -27.06 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.32 -8.71 -43.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588747365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.803 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds